BAC Information

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BAC

Clone NameB6Ng01-301I18
Chromosome8 (Build37)
Map Location 73,458,180 - 73,565,045
singlet/doubletdoublet
Overlap genenone
Upstream geneGatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
Downstream geneLOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301I18.bB6Ng01-301I18.g
ACCGA095832GA095833
length1,1061,162
definitionB6Ng01-301I18.b B6Ng01-301I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,458,180 - 73,459,289)(73,563,889 - 73,565,045)
sequence
gaattctgggctagagcaaggcttgggaaggtttgcctgtacggtgtgag
gcacacggtccctggcacagtaaccagccaggtggcagagtgtaggtcag
agtaaacggactgtcttcagttgtgatctagtcagagaagcgcctacatg
tacggctaagggatttgaaggtgtattttgagtctgagtcttatttctgg
gagcgtggggttggaaggaagaaccagacccaaccctccgttcatttcct
cacacagctccacacagtctgatgtttgttgcttcggtagttcagccgta
aacaatgacatttgcccggtgccctgaaatgaagttgtgcatcagagtct
gagcccaaaggcacagaagaaaccatctctagggaacttttgggaaagtt
tggtcctgacattgaaacttcgttttttctttctattttggatgccgatg
tgatggtttgtgcatgaagttctcagtctaagggtactaagggtactcac
taaatatgttgattctggaagcaggcccgggtcctgacagcctccagtgg
ctctctgagcccctcctggcctgtctgccccatgtttgtttaagttaatg
gacttgggcttctgtttgaggcagcttgaacgtaccctcaagtgatttgt
ggaaggcagctctaattccaagccttggcgaatgcacccaagtgattcgg
ggttcatgccaaactactcagcagtaccaagtgatgcagaacccacagag
aaagcctggctttcggcagtgggagctctccatggagctgagggtggagg
cacataggcggggctctcaggggacctcagccagctcaggagggaaggag
tcaccagctcgcctggtctatggcccagttctcacttgagcatgagaagc
agaatcagagagtctgtacccgagccctgaacctgctctctctggatgca
gcagcagaatctccccctgcaggcacccaaggtactgtgaatggcttcag
gcagatggaagcctactcctctttgttaagtttataccaaaagaaacttc
acattttccaagaatttttgcctttccacaccctgttgtgcccagagcat
atccta
gaattcacagtgaagaaaaaccctacgtatgtaagcattgtgggaaagat
ttctcttctttgagtggctgtcaaagacatgaacaaattcacactggtga
gaaaccctatgtatgtaaaaattgtgggaaagcctttactaatcccagtg
ccctccgacatcatgaaaggattcacagtggagagaaacctttcatatgt
aaacactgtgggaaatccttttatactttaagtgattgtcatgacatgaa
caaatccacactggtaagaaatctttcatttgcaagcaatgggggaaaac
ttttacccggtccagttcccttaaaatacatgagaagactcacagtagaa
atctctaagtgtagaacatggaaaggcattcttagcatgacaatgcatcg
ggcagagacccagggccatgttatctacaggaatgcctctagtcatcttg
atggcattcacctatgtagtagttcatagcatagtgagaagctccaacat
gatgtcaatagagacacataccttaaatggatgtatagagaagtcttcag
ttggctaacctctgagaaagtacccaatatcaagttgtataacaaagtca
tcaaaacagtttacaaagcattatgaaaatcccttaagtaacagaattca
ttaattctttttaagatccctgtgactaaacactaactggtcaataattc
agaagataaatcattagagtgttaaattctaattttgactcttgtaaata
aattttcagatgacctaatctcttagtgtctttaagcagtaaggcatgaa
tttaatgggttgtgtctttacaagtcatgtacatttcttctttctgtatt
ggattcaaatgagatgcattcctaatatgttttagagtaatgttaatgag
ctgttgaaaaatgaagtttttattttcaagggctttctctattgaaatca
tattgggaacttcttatcttgattattttttgtattttgtcggatttcat
ttgagtcaggtttcttctgtgtaccctgggtatcccaggactgcctttct
acacaggctggcatcaaacttcagatctactgttctctgttttccttatt
gctgagaattaaaggagaaaggtgcacatgcttgcttaatctttgatgtt
aatacatatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_73458180_73459289
seq2: B6Ng01-301I18.b_45_1150

seq1  GAATTCTGGGCTAGAGCAAGGCTTGGGAAGGTTTGCCTGTACGGTGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCTAGAGCAAGGCTTGGGAAGGTTTGCCTGTACGGTGTGAG  50

seq1  GCACACGGTCCCTGGCACAGTAACCAGCCAGGTGGCAGAGTGTAGGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGGTCCCTGGCACAGTAACCAGCCAGGTGGCAGAGTGTAGGTCAG  100

seq1  AGTAAACGGACTGTCTTCAGTTGTGATCTAGTCAGAGAAGCGCCTACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACGGACTGTCTTCAGTTGTGATCTAGTCAGAGAAGCGCCTACATG  150

seq1  TACGGCTAAGGGATTTGAAGGTGTATTTTGAGTCTGAGTCTTATTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCTAAGGGATTTGAAGGTGTATTTTGAGTCTGAGTCTTATTTCTGG  200

seq1  GAGCGTGGGGTTGGAAGGAAGAACCAGACCCAACCCTCCGTTCATTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTGGGGTTGGAAGGAAGAACCAGACCCAACCCTCCGTTCATTTCCT  250

seq1  CACACAGCTCCACACAGTCTGATGTTTGTTGCTTCGGTAGTTCAGCCGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCTCCACACAGTCTGATGTTTGTTGCTTCGGTAGTTCAGCCGTA  300

seq1  AACAATGACATTTGCCCGGTGCCCTGAAATGAAGTTGTGCATCAGAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGACATTTGCCCGGTGCCCTGAAATGAAGTTGTGCATCAGAGTCT  350

seq1  GAGCCCAAAGGCACAGAAGAAACCATCTCTAGGGAACTTTTGGGAAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAAAGGCACAGAAGAAACCATCTCTAGGGAACTTTTGGGAAAGTT  400

seq1  TGGTCCTGACATTGAAACTTCGTTTTTTCTTTCTATTTTGGATGCCGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGACATTGAAACTTCGTTTTTTCTTTCTATTTTGGATGCCGATG  450

seq1  TGATGGTTTGTGCATGAAGTTCTCAGTCTAAGGGTACTAAGGGTACTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTTGTGCATGAAGTTCTCAGTCTAAGGGTACTAAGGGTACTCAC  500

seq1  TAAATATGTTGATTCTGGAAGCAGGCCCGGGTCCTGACAGCCTCCAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTTGATTCTGGAAGCAGGCCCGGGTCCTGACAGCCTCCAGTGG  550

seq1  CTCTCTGAGCCCCTCCTGGCCTGTCTGCCCCATGTTTGTTTAAGTTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGCCCCTCCTGGCCTGTCTGCCCCATGTTTGTTTAAGTTAATG  600

seq1  GACTTGGGCTTCTGTTTGAGGCAGCTTGAACGTACCCTCAAGTGATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGGCTTCTGTTTGAGGCAGCTTGAACGTACCCTCAAGTGATTTGT  650

seq1  GGAAGGCAGCTCTAATTCCAAGCCTTGGCGAATGCACCCAAGTGATTCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGCTCTAATTCCAAGCCTTGGCGAATGCACCCAAGTGATTCGG  700

seq1  GGTTCATGCCAAACTACTCAGCAGTACCAAGTGATGCAGAACCCACAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGCCAAACTACTCAGCAGTACCAAGTGATGCAGAACCCACAGAG  750

seq1  AAAGCCTGGCTTTCGGCAGTGGGAGCTCTCCATGGAGCTGAGGGTGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGGCTTTCGGCAGTGGGAGCTCTCCATGGAGCTGAGGGTGGAGG  800

seq1  CACATAGGCGGGGCTCTCAGGGGGACCTCAGCCAGCTCAGGAGGGAAGGA  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACATAGGCGGGGCTCTCA-GGGGACCTCAGCCAGCTCAGGAGGGAAGGA  849

seq1  GTCACCAGCTCGCCTGGTCTATGGCCCAGTTCTCACTTGAGCATGAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAGCTCGCCTGGTCTATGGCCCAGTTCTCACTTGAGCATGAGAAG  899

seq1  CAGAATCAGAGAGTCTGTACCCGAGCCCTGAACCTGCTCTCCTCTGGATG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGAATCAGAGAGTCTGTACCCGAGCCCTGAACCTGCTCT-CTCTGGATG  948

seq1  CAGCAGGCAG-ATCT-CCCCTGCAGGCACCC-AGGTACTGTGAATGGC-T  996
      ||||| |||| |||| ||||||||||||||| |||||||||||||||| |
seq2  CAGCA-GCAGAATCTCCCCCTGCAGGCACCCAAGGTACTGTGAATGGCTT  997

seq1  CAGGCAGATGGGAAGCCCTACTTCCTCTTTGTTTAGTTTATACAAAAAGA  1046
      ||||||||| ||||| ||||| ||||||||||| ||||||||| ||||||
seq2  CAGGCAGAT-GGAAG-CCTAC-TCCTCTTTGTTAAGTTTATACCAAAAGA  1044

seq1  AACTTCACATTTTCCCAGGATATTTTGCCTTTCAACACCCTGTTGTGCCC  1096
      ||||||||||||||| || || ||||||||||| ||||||||||||| ||
seq2  AACTTCACATTTTCCAAGAAT-TTTTGCCTTTCCACACCCTGTTGTG-CC  1092

seq1  CAGAGCATATCCTA  1110
      ||||||||||||||
seq2  CAGAGCATATCCTA  1106

seq1: chr8_73563889_73565045
seq2: B6Ng01-301I18.g_68_1229 (reverse)

seq1  GATATA-GTATAAACATCAAAGATAAAGCCCAGCATGGTGGCAC---TCT  46
      |||||| |||| |||||||||||| ||| | ||||||   ||||   |||
seq2  GATATATGTATTAACATCAAAGATTAAG-CAAGCATG--TGCACCTTTCT  47

seq1  CCTTT-ATTCTCAGCACT-AGGGAAACAGAGACAGGTAGATCTTGAAGTT  94
      ||||| |||||||||| | ||| |||||||||   ||||||| |||||||
seq2  CCTTTAATTCTCAGCAATAAGGAAAACAGAGAACAGTAGATC-TGAAGTT  96

seq1  TGATGCCAGCCTGGTGTAAGAAAGCAGTTCTGGGATACCCAGGGTTACAC  144
      |||||||||||| |||||  || ||||| ||||||||||||||| |||||
seq2  TGATGCCAGCCT-GTGTAGAAAGGCAGTCCTGGGATACCCAGGG-TACAC  144

seq1  AGAGAAACCCTGACTCAAATGAAAATCCGAC-AAATAC-AAAAATATCAA  192
      |||  || ||||||||||||| ||||||||| |||||| |||||||   |
seq2  AGAAGAAACCTGACTCAAATG-AAATCCGACAAAATACAAAAAATAATCA  193

seq1  AGATAAGAAGTTCCC-ATATGATTTCAATAGAGAAAG-CCTTGAAA--TA  238
      ||||||||||||||| ||||||||||||||||||||| ||||||||   |
seq2  AGATAAGAAGTTCCCAATATGATTTCAATAGAGAAAGCCCTTGAAAATAA  243

seq1  AAACTTCATTTTTCAACAGCTCATTAACATTACTCTAAAACATATTAGGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCATTTTTCAACAGCTCATTAACATTACTCTAAAACATATTAGGA  293

seq1  ATGCATCTCATTTGAATCCAATACAGAAAGAAGAAATGTACATGACTTGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTCATTTGAATCCAATACAGAAAGAAGAAATGTACATGACTTGT  343

seq1  AAAGACACAACCCATTAAATTCATGCCTTACTGCTTAAAGACACTAAGAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACAACCCATTAAATTCATGCCTTACTGCTTAAAGACACTAAGAG  393

seq1  ATTAGGTCATCTGAAAATTTATTTACAAGAGTCAAAATTAGAATTTAACA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTCATCTGAAAATTTATTTACAAGAGTCAAAATTAGAATTTAACA  443

seq1  CTCTAATGATTTATCTTCTGAATTATTGACCAGTTAGTGTTTAGTCACAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGATTTATCTTCTGAATTATTGACCAGTTAGTGTTTAGTCACAG  493

seq1  GGATCTTAAAAAGAATTAATGAATTCTGTTACTTAAGGGATTTTCATAAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTAAAAAGAATTAATGAATTCTGTTACTTAAGGGATTTTCATAAT  543

seq1  GCTTTGTAAACTGTTTTGATGACTTTGTTATACAACTTGATATTGGGTAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAAACTGTTTTGATGACTTTGTTATACAACTTGATATTGGGTAC  593

seq1  TTTCTCAGAGGTTAGCCAACTGAAGACTTCTCTATACATCCATTTAAGGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGAGGTTAGCCAACTGAAGACTTCTCTATACATCCATTTAAGGT  643

seq1  ATGTGTCTCTATTGACATCATGTTGGAGCTTCTCACTATGCTATGAACTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTCTATTGACATCATGTTGGAGCTTCTCACTATGCTATGAACTA  693

seq1  CTACATAGGTGAATGCCATCAAGATGACTAGAGGCATTCCTGTAGATAAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGGTGAATGCCATCAAGATGACTAGAGGCATTCCTGTAGATAAC  743

seq1  ATGGCCCTGGGTCTCTGCCCGATGCATTGTCATGCTAAGAATGCCTTTCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTGGGTCTCTGCCCGATGCATTGTCATGCTAAGAATGCCTTTCC  793

seq1  ATGTTCTACACTTAGAGATTTCTACTGTGAGTCTTCTCATGTATTTTAAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTACACTTAGAGATTTCTACTGTGAGTCTTCTCATGTATTTTAAG  843

seq1  GGAACTGGACCGGGTAAAAGTTTTCCCCCATTGCTTGCAAATGAAAGATT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGACCGGGTAAAAGTTTTCCCCCATTGCTTGCAAATGAAAGATT  893

seq1  TCTTACCAGTGTGGATTTGTTCATGTCATGACAATCACTTAAAGTATAAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAGTGTGGATTTGTTCATGTCATGACAATCACTTAAAGTATAAA  943

seq1  AGGATTTCCCACAGTGTTTACATATGAAAGGTTTCTCTCCACTGTGAATC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCCCACAGTGTTTACATATGAAAGGTTTCTCTCCACTGTGAATC  993

seq1  CTTTCATGATGTCGGAGGGCACTGGGATTAGTAAAGGCTTTCCCACAATT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGATGTCGGAGGGCACTGGGATTAGTAAAGGCTTTCCCACAATT  1043

seq1  TTTACATACATAGGGTTTCTCACCAGTGTGAATTTGTTCATGTCTTTGAC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATACATAGGGTTTCTCACCAGTGTGAATTTGTTCATGTCTTTGAC  1093

seq1  AGCCACTCAAAGAAGAGAAATCTTTCCCACAATGCTTACATACGTAGGGT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTCAAAGAAGAGAAATCTTTCCCACAATGCTTACATACGTAGGGT  1143

seq1  TTTTCTTCACTGTGAATTC  1157
      |||||||||||||||||||
seq2  TTTTCTTCACTGTGAATTC  1162