BAC Information

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BAC

Clone NameB6Ng01-302C05
Chromosome8 (Build37)
Map Location 8,921,459 - 9,077,198
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneTmem28, Lig4, Abhd13, Tnfsf13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302C05.bB6Ng01-302C05.g
ACCGA096268GA096269
length827810
definitionB6Ng01-302C05.b B6Ng01-302C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,921,459 - 8,922,001)(9,076,787 - 9,077,198)
sequence
gaattcctgctgaagtcataattactctcctatctgaaggccctacacaa
gttctaccactccatgtcatttctctgacctcactggtgatccctacctg
catctcctgggtttctacactgcatcaatactagtctccttgtcaatttc
tgaactcatctgaacatatccttccttatagaccagacatttgcactgac
tgtttcctctacctgcaattctctctcgtgtatgtgtgtgtgtgtgtgtg
tctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtttatggaaacc
tcaccactatgtaggcatgattgacaaatcattagccatggatgaccaat
ctaatgttcaagtcatttttcttttgcatagttggtgggtaggctgaagg
atcaacccacaaatcatgacttagtcattcctatgacaaggctacataca
tcctgaagtgacctagtgatggctaggcaccagtcagctcattagcatac
aaatagacattccctggggagaggccaaggattttaatagccacgggcct
gggaaactgggaagaagaccaaatacacatgttacaacaatacaaaggaa
ttaaaggtaagtttcataaatgtgaagtgtgacaacgtctttaataacct
atgcatgtatctgttgtagattccctgtgggatactggctaacggctgag
gcaaaactcacctactctgcttggcaggaatgttagcaaataacaaccag
cacgtgtcctatgagtatggcttgggtcttaaataactatcagttgaggt
cctactcttgggaaaagtagctaaact

gaattcacagtgactgtagcatgcacaagacttatgcaagttaaaaacca
gacagaatcccagtactgagaagaggaagtggatataaagtcccacctct
aactgagacactctgcagttaatacctgctgggaagggaaagtcagtgtt
tccagtgggctattgttgggaatattaaccatagtctaaggcaggcccca
tgcccagaagtaattgggcaacacaaaatgaaccccatttttcttatctt
gtatgcactcgttcttttagtatattttgtctttttttttaaaaaaaatt
aaaaattaaaaagttttagtttttgtttttagagcaagaaagaaaaaggt
catagagttggtggaaagggaatggggaggatctgggaggagatggggtg
gaactcctaattcctgacaggattctgtaatagaaagatggcagataaag
tctaaggaaaacaaagtaagctacagactttaattaacaacaaatacatc
agggttcatttattgattagaataaactcatcactgtacaaggaaaggac
gccatggcaacgctactctatttttaattttcctaaagctctaaaatggc
ttttaaaaataaggtttagttttaaaataataaagacattacatgaaagc
actcacttctgtttagctttgggctcccacatgactgccagggataatgg
ctgtttccacaatttatgcgactggagatgccctgcccagagaattcact
cctaagaatgatcatatgtgctcactattttcataaagtctgagaagata
ctagtgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_8921459_8922001
seq2: B6Ng01-302C05.b_327_871

seq1  TGTGTCTTTATGGAAACCTCACCACTATGTAGGCATGATTGACAAATCAT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTATGGAAACCTCACCACTATGTAGGCATGATTGACAAATCAT  50

seq1  TAGCCATGGATGACCAATCTAATGTTCAAGTCATTTTTCTTTTGCATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGGATGACCAATCTAATGTTCAAGTCATTTTTCTTTTGCATAGT  100

seq1  TGGTGGGTAGGCTGAAGGATCAACCCACAAATCATGACTTAGTCATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTAGGCTGAAGGATCAACCCACAAATCATGACTTAGTCATTCCT  150

seq1  ATGACAAGGCTACATACATCCTGAAGTGACCTAGTGATGGCTAGGCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGGCTACATACATCCTGAAGTGACCTAGTGATGGCTAGGCACCA  200

seq1  GTCAGCTCATTAGCATACAAATAGACATTCCCTGGGGAGAGGCCAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTCATTAGCATACAAATAGACATTCCCTGGGGAGAGGCCAAGGAT  250

seq1  TTTAATAGCCACGGGCCTGGGAAACTGGGAAGAAGACCAAATACACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGCCACGGGCCTGGGAAACTGGGAAGAAGACCAAATACACATGT  300

seq1  TACAACAATACAAAGGAATTAAAGGTAAGTTTCATAAATGTGAAGTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAATACAAAGGAATTAAAGGTAAGTTTCATAAATGTGAAGTGTGA  350

seq1  CAACGTCTTTAATAACCTATGCATGTATCTGTTGTAGATT-CCTGTGGGA  399
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAACGTCTTTAATAACCTATGCATGTATCTGTTGTAGATTCCCTGTGGGA  400

seq1  TACTGGCTAACGGCTGAGGCAAAACTCACCTACTCTGCTTGGCAGGAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTAACGGCTGAGGCAAAACTCACCTACTCTGCTTGGCAGGAATG  450

seq1  TTAGCAAATAACAACCAGCACGTGTCCTATGAGTTTGGCTTGGGTCTTAA  499
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAGCAAATAACAACCAGCACGTGTCCTATGAGTATGGCTTGGGTCTTAA  500

seq1  ATAACTATCAGTTGAGGTCCTACTCTT-GGAAAAGTAGCTAAACT  543
      ||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAACTATCAGTTGAGGTCCTACTCTTGGGAAAAGTAGCTAAACT  545


seq1: chr8_9076787_9077198
seq2: B6Ng01-302C05.g_463_875 (reverse)

seq1  ACACACTAGTATCTTCTCAGACTTTATGAAAATAGTGAGCACATATGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAGTATCTTCTCAGACTTTATGAAAATAGTGAGCACATATGATC  50

seq1  ATTCTTAGGAGTGAATTCTCTGGGCAGGGCATCTCCAGTCGCATAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGGAGTGAATTCTCTGGGCAGGGCATCTCCAGTCGCATAAATTG  100

seq1  TGGAAACAGCCATTATCCCTGGCAGTCATGTGGGAGCCCAAAGCTAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAGCCATTATCCCTGGCAGTCATGTGGGAGCCCAAAGCTAAACA  150

seq1  GAAGTGAGTGCTTTCATGTAATGTCTTTATTATTTTAAAACTAAACCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGTGCTTTCATGTAATGTCTTTATTATTTTAAAACTAAACCTTA  200

seq1  TTTTTAAAAGCCATTTTAGAGCTTTAGGAAAATTAAAAATAGAGTAGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAGCCATTTTAGAGCTTTAGGAAAATTAAAAATAGAGTAGCGT  250

seq1  TGCCATGGCGTCCTTTCCTTGTACAGTGATGAGTTTATTCTAATCAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGGCGTCCTTTCCTTGTACAGTGATGAGTTTATTCTAATCAATAA  300

seq1  ATGAACCCTGATGTA-TTGTTGTTAATTAAAGTCTGTAGCTTACTTTGTT  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAACCCTGATGTATTTGTTGTTAATTAAAGTCTGTAGCTTACTTTGTT  350

seq1  TTCCTTAGACTTTATCTGCCATCTTTCTATTACAGAATCCTGTCAGGAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGACTTTATCTGCCATCTTTCTATTACAGAATCCTGTCAGGAAT  400

seq1  TAGGAGTTCCACC  412
      |||||||||||||
seq2  TAGGAGTTCCACC  413


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