BAC Information

Click to search

BAC

Clone NameB6Ng01-303F12
Chromosome8 (Build37)
Map Location 5,675,412 - 5,676,521
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
Downstream geneLOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303F12.bB6Ng01-303F12.g
ACCGA097167GA097168
length1,1091,202
definitionB6Ng01-303F12.b B6Ng01-303F12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgttgcataaatttaaagtacaatgcctttatcagggattgaaa
attatgagttatataatacaaaatagttgagagcctagtgacaattactt
caaagcatttccaggtagagtatggtgagagaaaaagagagacagacaga
gagacagatacagacagacagacagatagaaagagagaaaataggagaga
ttttgatctcatgatgctgggagctactgtattctttaaaagatggtata
cctggacgtcctttgatcagatttgcacatgcccttgagatgactttcag
atactcatcacctatgtaactttgtctctctttgcttgcaagctgcacct
aggcaagtggcttcttctgcggtttaacatatgacgtgttcctaccttca
agtccaaaagagaagggaaatgtgattcctaaactaaatccttcaaagct
gtggagtagatttaaatcaatattttaacattaatatttattaataatta
gtatttttgattgattaccacagagactttgttttagcgattgaagttga
ctaaaaaagagtaataaatttaaaaaaaatgggaatcttttgttaaacac
tacattgtcatttatttgatctagaataagactggacaaactctatccaa
gaaagtctgcgtgatgactatttgaagcctggtgttatacattctcttta
agtaatattcaactcagtttattcagcacagaacacacatttctctttat
gtggttgcattttatttacaaaatcaacaaagttgttctgaaagtaataa
ttttccaaatagttattatagattaacttttagaaacacatttaatgaat
aaaaatttatcagtttgtcagcaaggtcataagaggtttcatagaatatt
gtagttaattaaatctgtgtgttgaggtcacttttaattcagactgcatt
tgaagcagcttattgtgaacaatgtagaacattctgtttgaaagtacaag
tgaaaggaatacagtctgagcaacttttgttctgaatgtttaggacagaa
gaacacgatatgtgaattttttaatgcatattttcttattaacttcaaat
atttccctt
gaattctctatttagctccgtactccattttttaaaagggttatttagtt
ctctggcttctaccttcttgaattatttgtatatttttaatattagccca
atatcagatgtagggttggtaaatatcttttaccaatctgtgggttgcca
ttttgtcctattgataccgtcctttgacttacagaagcttttcaatttta
cgtggtcccttttgtctatttttgatcttaaagaataagccattggtgtt
gtatccaggaacatttcccctgtgcccaagtatgcaaggatcgtcctcat
tttctcttctataagattcagtatatctggttttatgtggaggtccttga
ttcatttgtacttgagttttgtccaaagagataagtatgaatcaatttgc
attcttctagatgctagccgccagttgaactagtaccattttttgaaaat
gctgtctttatttatttttttttcctattggatggtttttagcttctttg
tcaaagatcaagtgaccataggtgtgttggttcctttctgggtcttaaat
tctatttcattgatctacctgcctgtctttataccaataccatgcaggtt
tttatcactattgctctatagtacagattaaggccagggatggtgattac
tccacaagttctcttattattgagaataagttttaatatcctaggttttt
tgttatttcaaataaatttgagaattgattttcctaactctatgaaagaa
ttgagttgaaattttgatggggattgcactgaatctgaagattgcttttc
agtaagatggccatttttacactattaatcctgccaaccccatgagcatg
ggtgatctttgcatctgctgagatctttgatttctttcttcagggatttg
aagttcttggtcatacagatctttcaccttgcttagttaggagtcacacc
caaaatattttaatatcattttggctatttggaaggtggggtcggcttcc
ctaacttgctttcttcagtaccctttatattccttggagcagaggaaaag
caacctgaattttggttggagtaagtttcattagtccagtaaacgcttgc
ctgaagttgtcttaccagcctctgagagggtgtactctattcgaaattct
ggactgacctttagtatatacctatataatatcgcatctgcaaagaaaca
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5675412_5676521
seq2: B6Ng01-303F12.b_41_1149 (reverse)

seq1  AAGGGGAAAATATTTGAAAGTTAAATAAAGAAAATATCCAATAAAAAATT  50
      |||||  ||||||||| |||||||   |||||||||| || |||||||||
seq2  AAGGG--AAATATTTG-AAGTTAA--TAAGAAAATATGCATTAAAAAATT  45

seq1  CACATATCGTGTCTTCCTGGTCCTAAACATTCAGAAC-AAAGGTGCTCAG  99
      ||||||||||||  | || |||||||||||||||||| |||| |||||||
seq2  CACATATCGTGTTCTTCT-GTCCTAAACATTCAGAACAAAAGTTGCTCAG  94

seq1  ACTGTAT--CCTTCACTTGTACTTTCAAACAGAATGTTCTACATTGTTCA  147
      |||||||  | |||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTCCTTTCACTTGTACTTTCAAACAGAATGTTCTACATTGTTCA  144

seq1  CAATAA-CTGCTTCAAATGCAGTCTGAATTAAAAGTGACCTCAACACACA  196
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGCTGCTTCAAATGCAGTCTGAATTAAAAGTGACCTCAACACACA  194

seq1  GATTTAATTAACTACAATATTCTATG-AACCTCTTATGACCTTGCTGACA  245
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATTTAATTAACTACAATATTCTATGAAACCTCTTATGACCTTGCTGACA  244

seq1  AACTGATAAATTTTTATTCATTAAATGTGTTTCTAAAAGTTAATCTATAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATAAATTTTTATTCATTAAATGTGTTTCTAAAAGTTAATCTATAA  294

seq1  TAACTATTTGGAAAATTATTACTTTCAGAACAACTTTGTTGATTTTGTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTTGGAAAATTATTACTTTCAGAACAACTTTGTTGATTTTGTAA  344

seq1  ATAAAATGCAACCACATAAAGAGAAATGTGTGTTCTGTGCTGAATAAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGCAACCACATAAAGAGAAATGTGTGTTCTGTGCTGAATAAACT  394

seq1  GAGTTGAATATTACTTAAAGAGAATGTATAACACCAGGCTTCAAATAGTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAATATTACTTAAAGAGAATGTATAACACCAGGCTTCAAATAGTC  444

seq1  ATCACGCAGACTTTCTTGGATAGAGTTTGTCCAGTCTTATTCTAGATCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGCAGACTTTCTTGGATAGAGTTTGTCCAGTCTTATTCTAGATCAA  494

seq1  ATAAATGACAATGTAGTGTTTAACAAAAGATTCCCATTTTTTTTAAATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGACAATGTAGTGTTTAACAAAAGATTCCCATTTTTTTTAAATTT  544

seq1  ATTACTCTTTTTTAGTCAACTTCAATCGCTAAAACAAAGTCTCTGTGGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTTTTTTAGTCAACTTCAATCGCTAAAACAAAGTCTCTGTGGTA  594

seq1  ATCAATCAAAAATACTAATTATTAATAAATATTAATGTTAAAATATTGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAAAAATACTAATTATTAATAAATATTAATGTTAAAATATTGAT  644

seq1  TTAAATCTACTCCACAGCTTTGAAGGATTTAGTTTAGGAATCACATTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTACTCCACAGCTTTGAAGGATTTAGTTTAGGAATCACATTTCC  694

seq1  CTTCTCTTTTGGACTTGAAGGTAGGAACACGTCATATGTTAAACCGCAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTTGGACTTGAAGGTAGGAACACGTCATATGTTAAACCGCAGA  744

seq1  AGAAGCCACTTGCCTAGGTGCAGCTTGCAAGCAAAGAGAGACAAAGTTAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCACTTGCCTAGGTGCAGCTTGCAAGCAAAGAGAGACAAAGTTAC  794

seq1  ATAGGTGATGAGTATCTGAAAGTCATCTCAAGGGCATGTGCAAATCTGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGATGAGTATCTGAAAGTCATCTCAAGGGCATGTGCAAATCTGAT  844

seq1  CAAAGGACGTCCAGGTATACCATCTTTTAAAGAATACAGTAGCTCCCAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACGTCCAGGTATACCATCTTTTAAAGAATACAGTAGCTCCCAGC  894

seq1  ATCATGAGATCAAAATCTCTCCTATTTTCTCTCTTTCTATCTGTCTGTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGATCAAAATCTCTCCTATTTTCTCTCTTTCTATCTGTCTGTCT  944

seq1  GTCTGTATCTGTCTCTCTGTCTGTCTCTCTTTTTCTCTCACCATACTCTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTATCTGTCTCTCTGTCTGTCTCTCTTTTTCTCTCACCATACTCTA  994

seq1  CCTGGAAATGCTTTGAAGTAATTGTCACTAGGCTCTCAACTATTTTGTAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAATGCTTTGAAGTAATTGTCACTAGGCTCTCAACTATTTTGTAT  1044

seq1  TATATAACTCATAATTTTCAATCCCTGATAAAGGCATTGTACTTTAAATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTCATAATTTTCAATCCCTGATAAAGGCATTGTACTTTAAATT  1094

seq1  TATGCAACAGAATTC  1110
      |||||||||||||||
seq2  TATGCAACAGAATTC  1109