BAC Information

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BAC

Clone NameB6Ng01-303K12
Chromosome8 (Build37)
Map Location 74,171,821 - 74,172,988
singlet/doubletsinglet
Overlap geneUnc13a
Upstream genePgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1
Downstream geneJak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303K12.bB6Ng01-303K12.g
ACCGA097405GA097406
length1,1721,161
definitionB6Ng01-303K12.b B6Ng01-303K12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttatcctcctcgatgatagacacgatgagggtgatcagcttgga
ccagaaatccaggttcttgatgctagggccttgctcctctgggggaacct
cccccttcttggcctgaaaggggagaaagggacaattcgtagcagttagg
gtgtcaggggtactgcaggccacactcttgcaccacagacttgggaccaa
atgggcttcatggtaagactctcatttcaaacaaacaaactgaaaaagga
cgaaaaactgaaagaaattcaatccaagccagtatcttttcttttctgaa
gcagaaacttaagatgtagcccaggctggcctggaacagtccatcctcac
gtctcagtgtcctgagggccaggctggcatagggataggctgtctttcta
caccatgcgggtctcatggacgaaccacaggtaaccaggtttggtggcaa
gccctagcctgccctcttacctctcaccagctttcaaatctttcttttta
agatttctttgactttatacgtatgtttgcgtgtctgtatgtacaccatg
tgcatgtgggtgcccaaggaggccagaggcactgcagttataggtggctg
tgggccaccatgtgggtgctgggaatcaaactctagtcctctggaggagc
agtaagtactcttaaccactgaacttaactctaacagaccagactcactg
aaccttttgcaaatagaaactttctactaaccataaggctttaagccaaa
ctcagagagctcattcttgactgcctgctgtgtgcttggtgctgtgtgct
cggtactgagtgcttggtgctgtgtgctcagtgctgtgtgttctgtgctg
agtgcttggtgctaagtgccctatgctgtgtgttctgtcagtctgaattc
cagaagacaacactgagggtctgagcacagcatgtcccagggctcctgtg
aaggtgaagtcccatccaagtctcaccgggatccgtttggtacctcccgg
gccatagagctcatggcagttgttgaagatgtactcatagtggagtttga
gcagcttcacacagtctttcactaactgctggcacgccgggcggcctctg
cagtctgatctgaaagcgagagactggctgagagcttgggagccattagc
gttacagtaccaagagggtatg
gaattctatggagacaagattaaatatcaggtatggatggagggaggaga
ctggatgagggattgtttgaagatggagacagaaaggatgaggttgtggg
aggacagagaaggagaatactgggagagacaactggattgggcatgcacc
tatgggatgagctggaaacctagcacactggaaactctcagatcaggact
ctatgtgggtgatcctatctaagactcttaacaactagagatatgaagct
tgaaccagcattgcctgtaacccagaaaaccttccaatgcaaagattagg
tcatcaactcaaccacaaaactttagacccacaatttctcctttcaacaa
tatatataggggcaaaaaggtggacagaattttaggtaataaacagctac
tgactggcccagcttgagacacaagacatgacagagaacccacatgtgac
actattaatgatattttgttatacttgccaacaagaacctagcataactg
tcattagtagccagacaggacccccagaggaaagatgggaacaccaaccc
accaacaaagtttttgacccaaaattggcccagtctaaaaaaaatgcagg
gagtagatactgaaggaatgacctattttttttagtcagtccattttgag
accatatacaggcaccagtcccttaccctattaataatgctatgctgtac
ttgcagaaggaaactagcataccaaccctctgagaggctctacccagcag
ctaactgagacagatgcagatatgcaaacattggatggaagttgagaacc
cctgggaaagaaatgaaggccctcaaggagtttggcaaccccacagaaaa
gccaagtgtcaactaagctggactcctgggagctcccagagactagagac
accaagcaaaaagcatacatgggcctattgcaagggctcctgaaacattg
tttcagatggctgccctatctgggcctcacagggagagatgtgcctatcc
tgcaaagaacattgaccaccactatgtcttggaagaggttgtggtgaggg
gtccaaagtggggcacattttgggggtgtgattcaattaatgctacaaga
agcactagcagctaaatggttgaaggcactgcctttaaccttgaatgtgt
gtgttttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_74171821_74172988
seq2: B6Ng01-303K12.b_43_1214

seq1  GAATTCTTATCCTCCTCGATGATAGACACGATGAGGGTGATCAGCTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCCTCCTCGATGATAGACACGATGAGGGTGATCAGCTTGGA  50

seq1  CCAGAAATCCAGGTTCTTGATGCTAGGGCCTTGCTCCTCTGGGGGAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCCAGGTTCTTGATGCTAGGGCCTTGCTCCTCTGGGGGAACCT  100

seq1  CCCCCTTCTTGGCCTGAAAGGGGAGAAAGGGACAATTCGTAGCAGTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCTTGGCCTGAAAGGGGAGAAAGGGACAATTCGTAGCAGTTAGG  150

seq1  GTGTCAGGGGTACTGCAGGCCACACTCTTGCACCACAGACTTGGGACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGGGTACTGCAGGCCACACTCTTGCACCACAGACTTGGGACCAA  200

seq1  ATGGGCTTCATGGTAAGACTCTCATTTCAAACAAACAAACTGAAAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTCATGGTAAGACTCTCATTTCAAACAAACAAACTGAAAAAGGA  250

seq1  CGAAAAACTGAAAGAAATTCAATCCAAGCCAGTATCTTTTCTTTTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAACTGAAAGAAATTCAATCCAAGCCAGTATCTTTTCTTTTCTGAA  300

seq1  GCAGAAACTTAAGATGTAGCCCAGGCTGGCCTGGAACAGTCCATCCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACTTAAGATGTAGCCCAGGCTGGCCTGGAACAGTCCATCCTCAC  350

seq1  GTCTCAGTGTCCTGAGGGCCAGGCTGGCATAGGGATAGGCTGTCTTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTGTCCTGAGGGCCAGGCTGGCATAGGGATAGGCTGTCTTTCTA  400

seq1  CACCATGCGGGTCTCATGGACGAACCACAGGTAACCAGGTTTGGTGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCGGGTCTCATGGACGAACCACAGGTAACCAGGTTTGGTGGCAA  450

seq1  GCCCTAGCCTGCCCTCTTACCTCTCACCAGCTTTCAAATCTTTCTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGCCTGCCCTCTTACCTCTCACCAGCTTTCAAATCTTTCTTTTTA  500

seq1  AGATTTCTTTGACTTTATACGTATGTTTGCGTGTCTGTATGTACACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTTGACTTTATACGTATGTTTGCGTGTCTGTATGTACACCATG  550

seq1  TGCATGTGGGTGCCCAAGGAGGCCAGAGGCACTGCAGTTATAGGTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGGGTGCCCAAGGAGGCCAGAGGCACTGCAGTTATAGGTGGCTG  600

seq1  TGGGCCACCATGTGGGTGCTGGGAATCAAACTCTAGTCCTCTGGAGGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACCATGTGGGTGCTGGGAATCAAACTCTAGTCCTCTGGAGGAGC  650

seq1  AGTAAGTACTCTTAACCACTGAACTTAACTCTAACAGACCAGACTCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTACTCTTAACCACTGAACTTAACTCTAACAGACCAGACTCACTG  700

seq1  AACCTTTTGCAAATAGAAACTTTCTACTAACCATAAGGCTTTAAGCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTGCAAATAGAAACTTTCTACTAACCATAAGGCTTTAAGCCAAA  750

seq1  CTCAGAGAGCTCATTCTTGACTGCCTGCTGTGTGCTTGGTGCTGTGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAGCTCATTCTTGACTGCCTGCTGTGTGCTTGGTGCTGTGTGCT  800

seq1  CGGTACTGAGTGCTTGGTGCTGTGTGCTCAGTGCTGTGTGTTCTGTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACTGAGTGCTTGGTGCTGTGTGCTCAGTGCTGTGTGTTCTGTGCTG  850

seq1  AGTGCTTGGTGCTAAGTGCCCTATGCTGTGTGTTCTGTCAGTCTGAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGTGCTAAGTGCCCTATGCTGTGTGTTCTGTCAGTCTGAATTC  900

seq1  CAGAAGACAACACTGAGGGTCTGAGCACAGCATGTCCCAGGGCTCCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACAACACTGAGGGTCTGAGCACAGCATGTCCCAGGGCTCCTGTG  950

seq1  AAGGTGAAGTCCCATCCAAGTCTCACC-GGATCCGTTTGGTA-CTCCC-G  997
      ||||||||||||||||||||||||||| |||||||||||||| ||||| |
seq2  AAGGTGAAGTCCCATCCAAGTCTCACCGGGATCCGTTTGGTACCTCCCGG  1000

seq1  GCCATAGAGCTCATGGCAGTTGTTGAAGATGTACTCATAGGTGGAGTTGA  1047
      ||||||||||||||||||||||||||||||||||||||| ||||||||  
seq2  GCCATAGAGCTCATGGCAGTTGTTGAAGATGTACTCATA-GTGGAGTTTG  1049

seq1  GGCAGGCCTTCACACAGTCTTTCACTACCTGGCTGGCACGC--GGCGGGC  1095
       ||||  |||||||||||||||||||| || ||||||||||  ||||| |
seq2  AGCAG--CTTCACACAGTCTTTCACTAACT-GCTGGCACGCCGGGCGGCC  1096

seq1  TCTGCAGTTCCTGAACCTGAAAGCAGAGAGACTGGGTGAGGAGGCT-GGA  1144
      ||||||||  ||| | |||||||| |||||||||| ||| |||  | |||
seq2  TCTGCAGT--CTG-ATCTGAAAGC-GAGAGACTGGCTGA-GAGCTTGGGA  1141

seq1  GCCA-TAGCG-TACAG-ACCA----GGTATG  1168
      |||| ||||| ||||| ||||    ||||||
seq2  GCCATTAGCGTTACAGTACCAAGAGGGTATG  1172