BAC Information

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BAC

Clone NameB6Ng01-303M21
Chromosome8 (Build37)
Map Location 96,396,649 - 96,543,584
singlet/doubletdoublet
Overlap geneGnao1, Amfr, Nudt21
Upstream geneAytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneOgfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303M21.bB6Ng01-303M21.g
ACCGA097516GA097517
length1,1131,099
definitionB6Ng01-303M21.b B6Ng01-303M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,542,465 - 96,543,584)(96,396,649 - 96,397,762)
sequence
gaattcctgtatgcagaagtaaaagaagccgtctctatgagcacagctta
cacgtgtagaagagtaactgtagaacaagttttggttttctcttgttccc
taaattgccaccaccttcctgtttgaagagtaaaatgaatatgaccgaga
tagtggtggaaacatgtggcagtgttcattagcttttggttctactcata
cttttttttgtacattaaagaaagtgaatttcttatttgtattttttttt
aagtttctcattaaactctgaaaagtcttagagccgaggatccttttttc
cctgctttagactggggaatgttaaaacatgatcatggatgagataaggt
gagattgtgggccctttgctccagtagtgttggaagcatatggtcctagg
ctgttacaggtgtttgtaatgaggactttcctttactctggggaactaaa
tttctctgattaagttcaaggtacagtgtgtaccaaactacactctgtta
caaagaattcccaatatattacctgacgagtatattttataaaactctct
aggccttacttcacaagtcaagacattaaacatttgggagtacattaaaa
ataggtaagctgaaaaccattggaattggtataaaaagaagtccatctag
aactcattgcagtattttcatataatggcatagtgattgtttgcactgct
gtggattgcttcttactgagtgagccatgacaaaattacatgagttttta
aactctcaaattatagagttacagttatgggaatctgaggtgttgtatac
gtaatgataaacatgattttagtaagcagcaaagcttttcaaaagtattt
tagagtaggctgggtatggcggtacatacgtagaaccccggcacctggtg
cctaatgctgggggaaccagaatcccagtatagctgagatacttagcaag
tccctacctcaaaaataatagaaacaaaggaatagtctggatcactggat
tctagagtcaagacaagtttttgtcagcctagaaaacagcaacttaaatt
tctctagtacacctgctgcatggttagtatgagttataggagtaaggttc
agacaagatggtg
gaattccagtacaggcctgatttttttttttaaggtaggtgcttctctgc
ctctgactgcctccctgccctagatttgctttttgttgtttgtggtttag
gcatggtgtttgtttttatttttgagacaaggtcttgctatgtagcatag
aatttgagattgcagacattcaccatcatgcctctgtagcttacagtcta
gaacttgtcctccatgcctagctactcttgagtcttacagtgctctgcca
tgcctggtgaacctgcattcttacagtgctgtttgctcatccttaagttg
aagaattgtatgtgtctttccttgtccttctgcttgggattctgtgcacc
ttttcagtctgcacgcaaggctttctcagttaggacttctgcttgctatt
tgattactgactctcatccatcactttctctttcttctagaactcccaat
atgcctgcccagtctgatctgcttgggtctgccctgcacatcattgcttt
ttctgttcacatgtgctctctgtattctcctggaagtatatctgtatact
tggaagttttattcccattagttcctgagggcctcacacccacaactcag
cagggagagacccttgtactgcagttgggaagacagtattgtactgtgta
gaacatcttctgcatgtgtcctgcattgctctctgggtactgggatggtc
tggtcatactgttatatgcctcctaaggcactgagcatgtgcactgtttc
cgactgctcttctgctggggctttaatcattcagtaatgcgttccctgtg
gttgtttgtgggacctgagtagcagcagtctgcagctggtggcatgggat
tctcactccctctagtttgatggtattgaggaaagtgacccaccaatcta
cttttgggacactgggatcaatccttttccctcacattctgggttctcct
tcaccctcggctaagttgcacttatgaacttgctatgcttggctctaagc
acaggtctggagatgtgagcctaataagatcgagctactctctctctcct
actccacttatcctaaacaagaggatctggctctctttcactcagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96542465_96543584
seq2: B6Ng01-303M21.b_46_1158 (reverse)

seq1  CACCATCTTTGTCCTGAAACTTTACTCCTATAATTTCATACTAACCATGC  50
      ||||||| |||| ||| ||| ||||||||||||  |||||||||||||||
seq2  CACCATC-TTGT-CTG-AACCTTACTCCTATAA-CTCATACTAACCATGC  46

seq1  AGGCAGTGTACTAGA-AATTTAAAGTTGCTGTTTTCCTTGGGCTGAC-AA  98
      ||   |||||||||| || || ||||||||||||||  | ||||||| ||
seq2  AGCAGGTGTACTAGAGAAATTTAAGTTGCTGTTTTC--TAGGCTGACAAA  94

seq1  AACTTGTCTTGACCTCTAGAATCCAGTTGATTCAGACTATTCCTTTGTTT  148
      |||||||||||| ||||||||||||| |||| ||||||||||||||||||
seq2  AACTTGTCTTGA-CTCTAGAATCCAG-TGATCCAGACTATTCCTTTGTTT  142

seq1  CTATTATTTTTGAGGTAGGGACTTGCTAAGTATCTCAGCTATACTGGGAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTTTGAGGTAGGGACTTGCTAAGTATCTCAGCTATACTGGGAT  192

seq1  TCTGGTTCCCCCAGCATTAGGCACCCAGGTGCCGGGGTTCTACGTATGTA  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGGTTCCCCCAGCATTAGGCA-CCAGGTGCCGGGGTTCTACGTATGTA  241

seq1  CCGCCATACCCAGCCTACTCTAAAATACTTTTGAAAAGCTTTGCTGCTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCATACCCAGCCTACTCTAAAATACTTTTGAAAAGCTTTGCTGCTTA  291

seq1  CTAAAATCATGTTTATCATTACGTATACAACACCTCAGATTCCCATAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCATGTTTATCATTACGTATACAACACCTCAGATTCCCATAACT  341

seq1  GTAACTCTATAATTTGAGAGTTTAAAAACTCATGTAATTTTGTCATGGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCTATAATTTGAGAGTTTAAAAACTCATGTAATTTTGTCATGGCT  391

seq1  CACTCAGTAAGAAGCAATCCACAGCAGTGCAAACAATCACTATGCCATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTAAGAAGCAATCCACAGCAGTGCAAACAATCACTATGCCATTA  441

seq1  TATGAAAATACTGCAATGAGTTCTAGATGGACTTCTTTTTATACCAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAATACTGCAATGAGTTCTAGATGGACTTCTTTTTATACCAATTC  491

seq1  CAATGGTTTTCAGCTTACCTATTTTTAATGTACTCCCAAATGTTTAATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTTTTCAGCTTACCTATTTTTAATGTACTCCCAAATGTTTAATGT  541

seq1  CTTGACTTGTGAAGTAAGGCCTAGAGAGTTTTATAAAATATACTCGTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTGTGAAGTAAGGCCTAGAGAGTTTTATAAAATATACTCGTCAG  591

seq1  GTAATATATTGGGAATTCTTTGTAACAGAGTGTAGTTTGGTACACACTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATATTGGGAATTCTTTGTAACAGAGTGTAGTTTGGTACACACTGT  641

seq1  ACCTTGAACTTAATCAGAGAAATTTAGTTCCCCAGAGTAAAGGAAAGTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAACTTAATCAGAGAAATTTAGTTCCCCAGAGTAAAGGAAAGTCC  691

seq1  TCATTACAAACACCTGTAACAGCCTAGGACCATATGCTTCCAACACTACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACAAACACCTGTAACAGCCTAGGACCATATGCTTCCAACACTACT  741

seq1  GGAGCAAAGGGCCCACAATCTCACCTTATCTCATCCATGATCATGTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAAGGGCCCACAATCTCACCTTATCTCATCCATGATCATGTTTTA  791

seq1  ACATTCCCCAGTCTAAAGCAGGGAAAAAAGGATCCTCGGCTCTAAGACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCCAGTCTAAAGCAGGGAAAAAAGGATCCTCGGCTCTAAGACTT  841

seq1  TTCAGAGTTTAATGAGAAACTTAAAAAAAAATACAAATAAGAAATTCACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTTTAATGAGAAACTTAAAAAAAAATACAAATAAGAAATTCACT  891

seq1  TTCTTTAATGTACAAAAAAAAGTATGAGTAGAACCAAAAGCTAATGAACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATGTACAAAAAAAAGTATGAGTAGAACCAAAAGCTAATGAACA  941

seq1  CTGCCACATGTTTCCACCACTATCTCGGTCATATTCATTTTACTCTTCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACATGTTTCCACCACTATCTCGGTCATATTCATTTTACTCTTCAA  991

seq1  ACAGGAAGGTGGTGGCAATTTAGGGAACAAGAGAAAACCAAAACTTGTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGGTGGTGGCAATTTAGGGAACAAGAGAAAACCAAAACTTGTTC  1041

seq1  TACAGTTACTCTTCTACACGTGTAAGCTGTGCTCATAGAGACGGCTTCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTACTCTTCTACACGTGTAAGCTGTGCTCATAGAGACGGCTTCTT  1091

seq1  TTACTTCTGCATACAGGAATTC  1120
      ||||||||||||||||||||||
seq2  TTACTTCTGCATACAGGAATTC  1113

seq1: chr8_96396649_96397762
seq2: B6Ng01-303M21.g_67_1165

seq1  GAATTCCAGTACAGGCCTGATTTTTTTTTTTAAGGTAGGTGCTTCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACAGGCCTGATTTTTTTTTTTAAGGTAGGTGCTTCTCTGC  50

seq1  CTCTGACTGCCTCCCTGCCCTAGATTTGCTTTTTGTTGTTTGTGGTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTGCCTCCCTGCCCTAGATTTGCTTTTTGTTGTTTGTGGTTTAG  100

seq1  GCATGGTGTTTGTTTTTATTTTTGAGACAAGGTCTTGCTATGTAGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGTTTGTTTTTATTTTTGAGACAAGGTCTTGCTATGTAGCATAG  150

seq1  AATTTGAGATTGCAGACATTCACCATCATGCCTCTGTAGCTTACAGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGATTGCAGACATTCACCATCATGCCTCTGTAGCTTACAGTCTA  200

seq1  GAACTTGTCCTCCATGCCTAGCTACTCTTGAGTCTTACAGTGCTCTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTCCTCCATGCCTAGCTACTCTTGAGTCTTACAGTGCTCTGCCA  250

seq1  TGCCTGGTGAACCTGCATTCTTACAGTGCTGTTTGCTCATCCTTAAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTGAACCTGCATTCTTACAGTGCTGTTTGCTCATCCTTAAGTTG  300

seq1  AAGAATTGTATGTGTCTTTCCTTGTCCTTCTGCTTGGGATTCTGTGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGTATGTGTCTTTCCTTGTCCTTCTGCTTGGGATTCTGTGCACC  350

seq1  TTTTCAGTCTGCACGCAAGGCTTTCTCAGTTAGGACTTCTGCTTGCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTCTGCACGCAAGGCTTTCTCAGTTAGGACTTCTGCTTGCTATT  400

seq1  TGATTACTGACTCTCATCCATCACTTTCTCTTTCTTCTAGAACTCCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTGACTCTCATCCATCACTTTCTCTTTCTTCTAGAACTCCCAAT  450

seq1  ATGCCTGCCCAGTCTGATCTGCTTGGGTCTGCCCTGCACATCATTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCCAGTCTGATCTGCTTGGGTCTGCCCTGCACATCATTGCTTT  500

seq1  TTCTGTTCACATGTGCTCTCTGTATTCTCCTGGAAGTATATCTGTATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCACATGTGCTCTCTGTATTCTCCTGGAAGTATATCTGTATACT  550

seq1  TGGAAGTTTTATTCCCATTAGTTCCTGAGGGCCTCACACCCACAACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTTTATTCCCATTAGTTCCTGAGGGCCTCACACCCACAACTCAG  600

seq1  CAGGGAGAGACCCTTGTACTGCAGTTGGGAAGACAGTATTGTACTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAGACCCTTGTACTGCAGTTGGGAAGACAGTATTGTACTGTGTA  650

seq1  GAACATCTTCTGCATGTGTCCTGCATTGCTCTCTGGGTACTGGGATGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTTCTGCATGTGTCCTGCATTGCTCTCTGGGTACTGGGATGGTC  700

seq1  TGGTCATACTGTTATATGCCTCCTAAGGCACTGAGCATGTGCACTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATACTGTTATATGCCTCCTAAGGCACTGAGCATGTGCACTGTTTC  750

seq1  CGACTGCTCTTCTGCTGGGGCTTTAATCATTCAGTAATGCGTTCCCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGCTCTTCTGCTGGGGCTTTAATCATTCAGTAATGCGTTCCCTGTG  800

seq1  GTTGTTTGTGGGACCTGAGTAGCAGCAGTCTGCAGCTGGTGGCATGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTGGGACCTGAGTAGCAGCAGTCTGCAGCTGGTGGCATGGGAT  850

seq1  TCTCACTCCCTCTAGTTTGATGGTATTGAGGAAAGTGACCCACCAATCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCCCTCTAGTTTGATGGTATTGAGGAAAGTGACCCACCAATCTA  900

seq1  CTTTTGGGACAACTGGATCAATCCTTTTCCCTCACATTCT-GGTTCTCCT  949
      |||||||||||   |||||||||||||||||||||||||| |||||||||
seq2  CTTTTGGGACACTGGGATCAATCCTTTTCCCTCACATTCTGGGTTCTCCT  950

seq1  TCAACCCTCGGGCTAAGGTTTGCAACTTATGAACTTGCTATTGCTTGGCC  999
      || |||||| |||||||  |||| |||||||||||||||| |||||||| 
seq2  TC-ACCCTC-GGCTAAG--TTGC-ACTTATGAACTTGCTA-TGCTTGGC-  993

seq1  TCCTAAGCAACAGGGAACTGGAGATGTGAGCCCTAT-AGATCCGAGCTAC  1048
        |||||| |||||   |||||||||||||||  || |||| ||||||||
seq2  -TCTAAGC-ACAGG--TCTGGAGATGTGAGCCTAATAAGAT-CGAGCTAC  1038

seq1  TCTCTCTCTCCCCTACTCCCACCTTATCCTAAACAAAGAGGATCT-GCTC  1097
      |||||||||  ||||||||   |||||||||||| |||||||||| ||||
seq2  TCTCTCTCT--CCTACTCC--ACTTATCCTAAAC-AAGAGGATCTGGCTC  1083

seq1  TCTTTCACTCAGGCTCA  1114
      ||||||||||| |||||
seq2  TCTTTCACTCA-GCTCA  1099