BAC Information

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BAC

Clone NameB6Ng01-304D12
Chromosome8 (Build37)10 (Build37)
Map Location 5,421,726 - 5,422,89798,220,113 - 98,220,260
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePpia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304D12.bB6Ng01-304D12.g
ACCGA097829GA097830
length1,168780
definitionB6Ng01-304D12.b B6Ng01-304D12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,421,726 - 5,422,897)(98,220,113 - 98,220,260)
sequence
gaattccatcactgtcaactaaggaacatttgtaacagtgaatgagtcca
actttgaagctgtacctcatgtaattcagttttatcccagatggtaatgt
gcacagaaatgatggcagagctctattaggggatgtgcggggcaactgaa
agcaaggaaggaaagaaaatctccaaggacattttgaaagcaaattgtct
gtactatgactcagcccttggctgggaggaaactcaaacagcaaacaggt
catcttcaggtatggccttagagacagagcaacaaaagtttctcctgcct
tgagaaatagaagaaaaatgcagtcatagctgggctgattgtggaccact
ccagtattgtcacattaaaatcttagcatagttaaatctaattagaccac
tgttttgaaagttttctcatgttttctgacaaacgttttgtttgtaaaat
ataaataatttccttatttaaatcaattttcaaataaatacagcttaaat
cacttcaaaatttagggggtatttgaaaaactgagatcattttaaaacga
gtgcattgacatacattatgtacaatatatatatatatataatagaaatt
aaccggctgggcaggggtgttgcatgtctttaatcccagcacttgggagg
cagaggtaggtggatttctgagttcgaggacatcctggtctactgagtga
gttccaggacagcaaaggctacacagagaaacccctgtattgaaaacaaa
acaaaacaaaacaaacaaataagcaaacaaaaaaaaggtgaaggaaaagc
aagaaggatttctttttcttttgtctctgatactttttgagagattctat
ttttcaattttttttcaattttatttcatgttcatgggtgtttacttgca
tgtatgtctgtatgaggttgtaggttccctagaactggagttatagacag
ctgtaatctgccatgtgagtattgggaattaaacctcacttctctgggag
accagcaagtgctcttaacaactgagcttatctctccagtccaggaacat
tcttttttaacaaacaagaaatttaggtaaagaagcaggtaaaatgactg
accatctcatggatgcatgacagcatgaagtctcatcagttcttgagggt
ctcggtcatagggtttgg

gaattctcttgttttgtgttttctttagattcataggaatggctgcttgg
gttgagggcagttgtcttgggttgcttcttgtcttctgatccagcaagaa
gtttccacccatgttaaaggctgaaatcctagaggctttagtggcttctg
aatggcatctgtggtattttgcataggaatggcctccatagattcatgtg
tttgagtgcctggaccatagctagtggcacaactaggtggtatgaccttg
gagtaggtgtggccttgttggaggatgggtatcactgtggaagctttgag
gtctcctatgttcaagctaagcccagtttgacacatagtctccttatgct
gcctgcagatcaagatgtagatagaactcttagctcgttctccagcacca
tgtcttcctgcacaatgctatgtttcctgtcatgataatggaataaaccg
ttgaaagtataagccagccccaattaggtttcatttataaaagatgcctt
gggcatagtgtcccttcacaacaatcaaacccaaaataagacagcttcta
tttctattttcaggtcttgaccatttttgtttcctttaactgtttggttt
gatttgtttgttttctttaaggattttccttatttcctccaattttgttt
gtcttttcctgtttttctttaaaggatttatttacttcttctttaaggac
ctttgtcatcttcatacagttggattttagaggtggtgtgtgtgtgtgtg
tttcagttatgtttgaggtattcagggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5421726_5422897
seq2: B6Ng01-304D12.b_45_1212

seq1  GAATTCCATCACTGTCAACTAAGGAACATTTGTAACAGTGAATGAGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCACTGTCAACTAAGGAACATTTGTAACAGTGAATGAGTCCA  50

seq1  ACTTTGAAGCTGTACCTCATGTAATTCAGTTTTATCCCAGATGGTAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAGCTGTACCTCATGTAATTCAGTTTTATCCCAGATGGTAATGT  100

seq1  GCACAGAAATGATGGCAGAGCTCTATTAGGGGATGTGCGGGGCAACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAATGATGGCAGAGCTCTATTAGGGGATGTGCGGGGCAACTGAA  150

seq1  AGCAAGGAAGGAAAGAAAATCTCCAAGGACATTTTGAAAGCAAATTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGAAGGAAAGAAAATCTCCAAGGACATTTTGAAAGCAAATTGTCT  200

seq1  GTACTATGACTCAGCCCTTGGCTGGGAGGAAACTCAAACAGCAAACAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATGACTCAGCCCTTGGCTGGGAGGAAACTCAAACAGCAAACAGGT  250

seq1  CATCTTCAGGTATGGCCTTAGAGACAGAGCAACAAAAGTTTCTCCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAGGTATGGCCTTAGAGACAGAGCAACAAAAGTTTCTCCTGCCT  300

seq1  TGAGAAATAGAAGAAAAATGCAGTCATAGCTGGGCTGATTGTGGACCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATAGAAGAAAAATGCAGTCATAGCTGGGCTGATTGTGGACCACT  350

seq1  CCAGTATTGTCACATTAAAATCTTAGCATAGTTAAATCTAATTAGACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTGTCACATTAAAATCTTAGCATAGTTAAATCTAATTAGACCAC  400

seq1  TGTTTTGAAAGTTTTCTCATGTTTTCTGACAAACGTTTTGTTTGTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAAAGTTTTCTCATGTTTTCTGACAAACGTTTTGTTTGTAAAAT  450

seq1  ATAAATAATTTCCTTATTTAAATCAATTTTCAAATAAATACAGCTTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATTTCCTTATTTAAATCAATTTTCAAATAAATACAGCTTAAAT  500

seq1  CACTTCAAAATTTAGGGGGTATTTGAAAAACTGAGATCATTTTAAAACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAAAATTTAGGGGGTATTTGAAAAACTGAGATCATTTTAAAACGA  550

seq1  GTGCATTGACATACATTATGTACAATATATATATATATATAATAGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTGACATACATTATGTACAATATATATATATATATAATAGAAATT  600

seq1  AACCGGCTGGGCAGGGGTGTTGCATGTCTTTAATCCCAGCACTTGGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGCTGGGCAGGGGTGTTGCATGTCTTTAATCCCAGCACTTGGGAGG  650

seq1  CAGAGGTAGGTGGATTTCTGAGTTCGAGGACATCCTGGTCTACTGAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTAGGTGGATTTCTGAGTTCGAGGACATCCTGGTCTACTGAGTGA  700

seq1  GTTCCAGGACAGCAAAGGCTACACAGAGAAACCCCTGTATTGAAAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCAAAGGCTACACAGAGAAACCCCTGTATTGAAAACAAA  750

seq1  ACAAAACAAAACAAACAAATAAGCAAACAAAAAAAAGGTGAAGGAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACAAACAAATAAGCAAACAAAAAAAAGGTGAAGGAAAAGC  800

seq1  AAGAAGGATTTCTTTTTCTTTTGTCTCTGATAC-TTTTGAGAGATTCTAT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGAAGGATTTCTTTTTCTTTTGTCTCTGATACTTTTTGAGAGATTCTAT  850

seq1  TTTTCAA-TTTTTTTCAATTTTATTTCATGTTCAT-GGTGTTTACTTGCA  897
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTCAATTTTTTTTCAATTTTATTTCATGTTCATGGGTGTTTACTTGCA  900

seq1  TGTATGTCTGTATGAGGTTGTAGGTTCCCTAGAACTGGAGTTATAGACAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCTGTATGAGGTTGTAGGTTCCCTAGAACTGGAGTTATAGACAG  950

seq1  CTGTAATCTGCCATGTGAGTATTGGGAATTAAACCTCACTTCTCTGGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGTAATCTGCCATGTGAGTATTGGGAATTAAACCTCACTTCTCTGGGAG  1000

seq1  ACCAGCAAGTGCTCTTAACAACTGAGC-TATCTCTCCAGTCCAGGAACAT  1046
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCAGCAAGTGCTCTTAACAACTGAGCTTATCTCTCCAGTCCAGGAACAT  1050

seq1  TCCTTTTTTAAACAAAACAAGAAA-TTAGGTAAAGAAAGCAAGAGAAAAA  1095
      | |||||||||   |||||||||| |||||||||| ||||   ||  |||
seq2  T-CTTTTTTAA--CAAACAAGAAATTTAGGTAAAG-AAGC---AGGTAAA  1093

seq1  ATGACTGACACATCTCATGGATGCATGACAGCATGAGGTCTCATCAGTGT  1145
      ||||||||| |||||||||||||||||||||||||| ||||||||||| |
seq2  ATGACTGAC-CATCTCATGGATGCATGACAGCATGAAGTCTCATCAGT-T  1141

seq1  CTTGAGGTGCTCGGTCCTAGGGGTTGG  1172
      |||||||  ||||||| ||||| ||||
seq2  CTTGAGGGTCTCGGTCATAGGGTTTGG  1168


seq1: chr10_98220113_98220260
seq2: B6Ng01-304D12.g_309_468 (reverse)

seq1  CATGGTGCTGGAG---GAGCTGAGAGT----TCTACGCCTTTATCCAAAG  43
      |||||||||||||   ||||| |||||    |||||  ||| |||   ||
seq2  CATGGTGCTGGAGAACGAGCTAAGAGTTCTATCTACATCTTGATCTGCAG  50

seq1  GAGGCCAGGAGCAGACTTTCTCTTCTGAACTGGGTGGGGCTTCA------  87
      |  | ||  || ||||| | | |    |||||||    |||| |      
seq2  GCAG-CATAAGGAGACTATGTGT--CAAACTGGGCTTAGCTTGAACATAG  97

seq1  GAGCCC----ATCCT-CATAGTGACACTCTTCCTCCAACAAGGCCACACC  132
      ||| ||    | | | || ||||| || | ||||||||||||||||||||
seq2  GAGACCTCAAAGCTTCCACAGTGATACCCATCCTCCAACAAGGCCACACC  147

seq1  TACTCCAACAAGGTCA  148
      |||||   ||||||||
seq2  TACTC---CAAGGTCA  160


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