BAC Information

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BAC

Clone NameB6Ng01-304N21
Chromosome8 (Build37)
Map Location 75,956,315 - 75,957,377
singlet/doubletsinglet
Overlap genenone
Upstream geneCalr3, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large, LOC100039001
Downstream geneLOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304N21.bB6Ng01-304N21.g
ACCGA098303GA098304
length1,2011,060
definitionB6Ng01-304N21.b B6Ng01-304N21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaatca
gtagccaacatcaaaaaaaatgatgagaccctggaagcaatgccactaaa
atcagggactagtcaatgctgcccactttctccctacctcttaaacatag
tacttgaagtcctagccagagcaattcgacaacaaaaggagatcaagggg
atacaaatcggaaaagatgaagtcaaaatatcactttttgcaaatgacat
gatagtatatgtaagtgaccctgaaaattccaccagagaattcctaaacc
tgataaagagcttcagtgaagtagctggatataaaattaacacaaacaag
tcaatgccgtttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacctttttcaatagtcacaaataatataaaatatctttgtg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgtcaaaat
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aaagaattagaaagagcaatctgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggatgaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaaactgc
atggtactggtacagagacagacaagtagaccaatggaatagaattgaag
acccagaaatgaacccacacacctatggtcacttgatcttcgacaaggga
gctaaaaccatccagtggaagaaagacagcattttcaacagttggtgctg
gcacaactggttgtatcgtgtagaagaatgcgaatcgatccatacttatc
tccttgtactaaagtcaatctaagtggatcaaggaactcccacataaaac
cacagaccactgaacttatagagggaagaaaggtggggaaaagcctcgaa
gaattatggctgagggcaaatccttgaaatagaacatcaatggctgtgcc
tgtcagaatgagattgacaaaatggggaaccctccatgaacactggccta
c
gaattcatacaaactaatggtagagataaatctcccacttaaaatctcaa
caccaatctactgttagtcacaacattaagtagccagagcttgttcagct
tgagtttgtaatgaaatctttctagtcaactcaattactgaacagaaaca
acataaccctggttcaaatgataagaagcacaaaataaatggaaagcatt
attaaaattaactgtactttggacttaaaaagatgcaacaatattgaaag
cattgtgagttatttgttacacataggagttttaaataggtcagatcaat
gaaaagaaatgccatgtcactccagaccttcacagatcttcatgtgcctt
cttagcagcaataatttttctctcttcaacatttgcttcatgtaattata
tttttcttaggaaacttatctggctccagactggcccatatcttcatcta
ccattcgaagaggtgattcacacaatgtcacttccaggaatggggaattg
agtagactctaaaccattgtttctttgttgctgataggtagaaagtaaga
ctgagggaaagactgtgtttctaacttatctagattctaaatgattctta
aatagtcaccagatagccaaacctcaaagctaggaagtaaccaacttggg
gttttaactcagatctgattctaaatattcttttcaacaccaactatact
gtctcttgtggcaaagctcacataattcccacataaaggatttggatgaa
aatgagtgacaacagtgtctggcaaacacagaagtggatgctcacagtca
gctattggatggaacacagggcccccaatggaagagctagagaaagcacc
caaggagctaaaggggtctgcaaccctataggtggaacaacaatatgaac
taaccagtactcccagagcttgtttctctagctgtatatgtagcagaaga
tggcctagtcggccatcaatggagagaggacccttggtctgcaaacttta
ttatgccccagtacaggtaacgcaagccaagaagtaggagtgggtggggt
agggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_75956315_75957377
seq2: B6Ng01-304N21.g_68_1127

seq1  GAATTCATACAAACTAATGGTAGAGATAAATCTCCCACTTAAAATCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAAACTAATGGTAGAGATAAATCTCCCACTTAAAATCTCAA  50

seq1  CACCAATCTACTGTTAGTCACAACATTAAGTAGCCAGAGCTTGTTCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATCTACTGTTAGTCACAACATTAAGTAGCCAGAGCTTGTTCAGCT  100

seq1  TGAGTTTGTAATGAAATCTTTCTAGTCAACTCAATTACTGAACAGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGTAATGAAATCTTTCTAGTCAACTCAATTACTGAACAGAAACA  150

seq1  ACATAACCCTGGTTCAAATGATAAGAAGCACAAAATAAATGGAAAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACCCTGGTTCAAATGATAAGAAGCACAAAATAAATGGAAAGCATT  200

seq1  ATTAAAATTAACTGTACTTTGGACTTAAAAAGATGCAACAATATTGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTAACTGTACTTTGGACTTAAAAAGATGCAACAATATTGAAAG  250

seq1  CATTGTGAGTTATTTGTTACACATAGGAGTTTTAAATAGGTCAGATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGAGTTATTTGTTACACATAGGAGTTTTAAATAGGTCAGATCAAT  300

seq1  GAAAAGAAATGCCATGTCACTCCAGACCTTCACAGATCTTCATGTGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAATGCCATGTCACTCCAGACCTTCACAGATCTTCATGTGCCTT  350

seq1  CTTAGCAGCAATAATTTTTCTCTCTTCAACATTTGCTTCATGTAATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGCAATAATTTTTCTCTCTTCAACATTTGCTTCATGTAATTATA  400

seq1  TTTTTCTTAGGAAACTTATCTGGCTCCAGACTGGCCCATATCTTCATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAGGAAACTTATCTGGCTCCAGACTGGCCCATATCTTCATCTA  450

seq1  CCATTCGAAGAGGTGATTCACACAATGTCACTTCCAGGAATGGGGAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGAAGAGGTGATTCACACAATGTCACTTCCAGGAATGGGGAATTG  500

seq1  AGTAGACTCTAAACCATTGTTTCTTTGTTGCTGATAGGTAGAAAGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACTCTAAACCATTGTTTCTTTGTTGCTGATAGGTAGAAAGTAAGA  550

seq1  CTGAGGGAAAGACTGTGTTTCTAACTTATCTAGATTCTAAATGATTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAAAGACTGTGTTTCTAACTTATCTAGATTCTAAATGATTCTTA  600

seq1  AATAGTCACCAGATAGCCAAACCTCAAAGCTAGGAAGTAACCAACTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCACCAGATAGCCAAACCTCAAAGCTAGGAAGTAACCAACTTGGG  650

seq1  GTTTTAACTCAGATCTGATTCTAAATATTCTTTTCAACACCAACTATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAACTCAGATCTGATTCTAAATATTCTTTTCAACACCAACTATACT  700

seq1  GTCTCTTGTGGCAAAGCTCACATAATTCCCACATAAAGGATTTGGATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGTGGCAAAGCTCACATAATTCCCACATAAAGGATTTGGATGAA  750

seq1  AATGAGTGACAACAGTGTCTGGCAAACACAGAAGTGGATGCTCACAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGACAACAGTGTCTGGCAAACACAGAAGTGGATGCTCACAGTCA  800

seq1  GCTATTGGATGGAACACAGGGCCCCCAATGGAAGAGCTAGAGAAAGCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGGATGGAACACAGGGCCCCCAATGGAAGAGCTAGAGAAAGCACC  850

seq1  CAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAAC  900

seq1  TAACCAGTACTCCCAGAGCTTGTTTCTCTAGCTGTATATGTAGCAGAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTACTCCCAGAGCTTGTTTCTCTAGCTGTATATGTAGCAGAAGA  950

seq1  TGGCCTAGTCGGCCATCAATGGGAAGAGAGGACCCTTGGTCTTGCAAACT  1000
      ||||||||||||||||||||||  ||||||||||||||||| ||||||||
seq2  TGGCCTAGTCGGCCATCAATGG--AGAGAGGACCCTTGGTC-TGCAAACT  997

seq1  TTA-TATGCCCCAGTACAGGGTAACGCCAAGGCCAAGAAGTAGGAGTGGG  1049
      ||| |||||||||||||| ||||||||  | |||||||||||||||||||
seq2  TTATTATGCCCCAGTACA-GGTAACGC--AAGCCAAGAAGTAGGAGTGGG  1044

seq1  T-GGGTA-GGGGAGCA  1063
      | ||||| ||||||||
seq2  TGGGGTAGGGGGAGCA  1060