BAC Information

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BAC

Clone NameB6Ng01-305F13
Chromosome8 (Build37)
Map Location 36,393,047 - 36,558,204
singlet/doubletdoublet
Overlap genePpp1r3b, Thex1
Upstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804
Downstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305F13.bB6Ng01-305F13.g
ACCGA098659GA098660
length1,1291,139
definitionB6Ng01-305F13.b B6Ng01-305F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,393,047 - 36,394,181)(36,557,084 - 36,558,204)
sequence
gaattctttttggctgtgtgctcaatttgtactaaatctgatacggtcat
cctaatacccttagctacagaggggtggaagaacagcatccactaattcc
ttcttgaatcattgagagaccgcgggtatgatcaaatatgtcagttgcta
tacgggtcacattaggagcattcatgttttatgaatgtgaaataagaagc
aatggctgacatcgtatcgttcctccatttttaatatacagcagagctac
aaagtgagtttggaggaagaaatccctgctgcattcgttcagctacagag
agagaaaatcattagattttgccggggcaggacatcccagcgttctgttt
agacctctagatgccgtgtgtgtgactggacttctaaatgggtcaggcaa
gagaattctgccttgaaatcccagctgctggctctgggcttgcctccctc
ccaggtaacatatgcagagactcaggcacatttccagcagaataccattt
gcaccagagtctaagtttttttggagggagggaatcaaaatggaaattgg
tgaatttaaatgttcatttttgagcccctctttcaccacactaaaattcc
cccagagaaaagctatttggtcatctgcatgaataataagttcccacctc
ccgctgccagatgttgctttctacagggtgaaaaatgtgtttaaaattga
ttgttcctttttattataattttttagagggggaaaaacagttctaagat
gccaaggtaggctacattttctgagaatgacttgcataaacagagagggt
tttaatggattctgacttgatgtgtcagaatatgaaatgaaagattaaca
gctatgtaagcctgtgacagatgttgcaacccagtataacagccctgggg
atgccatccacatccctcccagaagaactgaagtataactgctcattaat
acagaaagcatctcctgccttttcttctctttgaaaagcactcagtttct
tcaccccggactgaattgtttgaaacattacttataactatagtttgggc
atgctttttattttgccttgaaacttcattgtggcatacaaacattttct
ttcgaactgaatttattgtatacgtatga
gaattccgcgtaaacattcggcgcgcgcgggcgcactgccgttccatcag
ccccgtggcgctgattggctgggttctctccagcgcccaccctccccgcc
agatgcggcggcaagcctttcggggtgctcggacagcccgtgtcttccca
gccccagacggcccactgccctctgcaccccgaggtgcatctgttcccga
gaggaccctcccccggtctttccccgtcccctactgtctcgcccagaacc
ctgccacgaccggctttctaagtgatttgctacttcctcacggcatgggc
aagatcaggagatgatccccggacttctgtttttcatcttgatgaattag
tgttggctagcgccgcgggttgtgagcgagatgctaaattctgtcgcttt
ttcgtaagaggagttgagtactgacacccaggttattcattcattggcag
ggtagagagatagatggcttgggtgtgaaaggctaggctcaaaaaccaaa
atgtcagaaggtgggtattccatagaggcgtcccaatgcctttattcttt
ccatttacaccttcgtgtagtagccagaatagccttttaaatattatttt
ttaaaatgtgtgtgtgtgcgcaggtgcctctgaagaccaggaaaggaggt
atgggtcttggggaagagcagagtttgttcttcatggttaagctgtctat
caggcctctagagtttccttttgacagtctgtgccgaggttgcgctgcgc
attccgtgccttcttcagtttgcccctctgctcagttcatatacacatct
tcgtccactctggcttccttgtgttcttttatcgtggagtgttttgtaac
gtaaggatcttgtgctcctcttgtccggagcatgcttctctggatctttc
cagattatttccctttgttggtaggtacttgggaaggctgaagacgcttc
catcttgccctcttctggaaaagaatgccccttttcattttaacaatacg
ttgttgacaatatcatctaagtcgggttcgaaaagctaattttatttgca
gaaagccgttttcttaaggaagaagttgatatacttcattggtctttcaa
gaagtctgaaaccttgaaatagagaaatgctttgcaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_36393047_36394181
seq2: B6Ng01-305F13.b_48_1176

seq1  GAATTCTTTTTGGCTGTGTGCTCAATTTGTACTAAATCTGATACGGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGGCTGTGTGCTCAATTTGTACTAAATCTGATACGGTCAT  50

seq1  CCTAATACCCTTAGCTACAGAGGGGTGGAAGAACAGCATCCACTAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATACCCTTAGCTACAGAGGGGTGGAAGAACAGCATCCACTAATTCC  100

seq1  TTCTTGAATCATTGAGAGACCGCGGGTATGATCAAATATGTCAGTTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAATCATTGAGAGACCGCGGGTATGATCAAATATGTCAGTTGCTA  150

seq1  TACGGGTCACATTAGGAGCATTCATGTTTTATGAATGTGAAATAAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGTCACATTAGGAGCATTCATGTTTTATGAATGTGAAATAAGAAGC  200

seq1  AATGGCTGACATCGTATCGTTCCTCCATTTTTAATATACAGCAGAGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGACATCGTATCGTTCCTCCATTTTTAATATACAGCAGAGCTAC  250

seq1  AAAGTGAGTTTGGAGGAAGAAATCCCTGCTGCATTCGTTCAGCTACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTTGGAGGAAGAAATCCCTGCTGCATTCGTTCAGCTACAGAG  300

seq1  AGAGAAAATCATTAGATTTTGCCGGGGCAGGACATCCCAGCGTTCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATCATTAGATTTTGCCGGGGCAGGACATCCCAGCGTTCTGTTT  350

seq1  AGACCTCTAGATGCCGTGTGTGTGACTGGACTTCTAAATGGGTCAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTAGATGCCGTGTGTGTGACTGGACTTCTAAATGGGTCAGGCAA  400

seq1  GAGAATTCTGCCTTGAAATCCCAGCTGCTGGCTCTGGGCTTGCCTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCTGCCTTGAAATCCCAGCTGCTGGCTCTGGGCTTGCCTCCCTC  450

seq1  CCAGGTAACATATGCAGAGACTCAGGCACATTTCCAGCAGAATACCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAACATATGCAGAGACTCAGGCACATTTCCAGCAGAATACCATTT  500

seq1  GCACCAGAGTCTAAGTTTTTTTGGAGGGAGGGAATCAAAATGGAAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGAGTCTAAGTTTTTTTGGAGGGAGGGAATCAAAATGGAAATTGG  550

seq1  TGAATTTAAATGTTCATTTTTGAGCCCCTCTTTCACCACACTAAAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAAATGTTCATTTTTGAGCCCCTCTTTCACCACACTAAAATTCC  600

seq1  CCCAGAGAAAAGCTATTTGGTCATCTGCATGAATAATAAGTTCCCACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAAAAGCTATTTGGTCATCTGCATGAATAATAAGTTCCCACCTC  650

seq1  CCGCTGCCAGATGTTGCTTTCTACAGGGTGAAAAATGTGTTTAAAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGCCAGATGTTGCTTTCTACAGGGTGAAAAATGTGTTTAAAATTGA  700

seq1  TTGTTCCTTTTTATTATAATTTTTTAGAGGGGGAAAAACAGTTCTAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTTTTTATTATAATTTTTTAGAGGGGGAAAAACAGTTCTAAGAT  750

seq1  GCCAAGGTAGGCTACATTTTCTGAGAATGACTTGCATAAACAGAGAGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTAGGCTACATTTTCTGAGAATGACTTGCATAAACAGAGAGGGT  800

seq1  TTTAATGGATTCTGACTTGATGTGTCAGAATATGAAATGAAAGATTAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGATTCTGACTTGATGTGTCAGAATATGAAATGAAAGATTAACA  850

seq1  GCTATGTAAGCCTGTGACAGATGTTGCAACCCAGTATAACAGCCCT-GGG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTATGTAAGCCTGTGACAGATGTTGCAACCCAGTATAACAGCCCTGGGG  900

seq1  ATGCCATCCACATCCCTCCCAGAAGAACTGAAGTATAACTGCTCATTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATCCACATCCCTCCCAGAAGAACTGAAGTATAACTGCTCATTAAT  950

seq1  ACAGAAAGCATCTCCTGCC-TTTCTTCTCCTTTGAAAAGGCACTCAGTTT  998
      ||||||||||||||||||| |||||||| ||||||||| |||||||||||
seq2  ACAGAAAGCATCTCCTGCCTTTTCTTCT-CTTTGAAAA-GCACTCAGTTT  998

seq1  CTTCAACCCCGGACTGAATTGTTTGAAACATTACTTATAACCTATAGTTT  1048
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTC-ACCCCGGACTGAATTGTTTGAAACATTACTTATAA-CTATAGTTT  1046

seq1  GGGCATGTTTTTTTTTTTTTTTTGGCTTGGAAACTTCATTGT-GCATACA  1097
      ||||||| ||||| ||||      || | ||||||||||||| |||||||
seq2  GGGCATGCTTTTTATTTT------GCCTTGAAACTTCATTGTGGCATACA  1090

seq1  AACATTTTCTTTTAGACTG-ATTTATTGTATACGTATGA  1135
      ||||||||||||   |||| |||||||||||||||||||
seq2  AACATTTTCTTTCGAACTGAATTTATTGTATACGTATGA  1129

seq1: chr8_36557084_36558204
seq2: B6Ng01-305F13.g_68_1206 (reverse)

seq1  GCCTTCAAAGCAT---TCTATCTCAAAGTTTCAGGACTC-TGAAAGA-CA  45
      |||| ||||||||   ||||| |||| |||||||   || ||||||| ||
seq2  GCCTGCAAAGCATTTCTCTATTTCAAGGTTTCAGACTTCTTGAAAGACCA  50

seq1  ATGAAGTATATTCAACTTCT--CTT-AGAAAACG---CTCTGCAAATTAA  89
      |||||||||| |||||||||  ||| ||||||||    |||||||| |||
seq2  ATGAAGTATA-TCAACTTCTTCCTTAAGAAAACGGCTTTCTGCAAA-TAA  98

seq1  AATTAGC-TTTCGAA-CCGACTTAGATGATATTGTCAACAACGTA-TGTT  136
      ||||||| ||||||| ||||||||||||||||||||||||||||| ||||
seq2  AATTAGCTTTTCGAACCCGACTTAGATGATATTGTCAACAACGTATTGTT  148

seq1  AAAATG-AAAGGGGCAT--CTTTCCAG-AGAGGGC-AGATGGAAGCGTCT  181
      |||||| ||||||||||   ||||||| ||||||| ||||||||||||||
seq2  AAAATGAAAAGGGGCATTCTTTTCCAGAAGAGGGCAAGATGGAAGCGTCT  198

seq1  TCAGCCTTCCAAAGTACCTACCAACAAAGGG-AATAATCTGGAAAGATCC  230
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  TCAGCCTTCCCAAGTACCTACCAACAAAGGGAAATAATCTGGAAAGATCC  248

seq1  AGAGAAGCATGCTCCGGACAAGAGGAGCACAAGATCCTTACGTTACAAAA  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCATGCTCCGGACAAGAGGAGCACAAGATCCTTACGTTACAAAA  298

seq1  CACTCCACGATAAAAGAACACAAGGAAGCCAGAGTGGACGAAGATGTGTA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACGATAAAAGAACACAAGGAAGCCAGAGTGGACGAAGATGTGTA  348

seq1  TATGAACTGAGCAGAGGGGCAAACTGAAGAAGGCACGGAATGCGCAGCGC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTGAGCAGAGGGGCAAACTGAAGAAGGCACGGAATGCGCAGCGC  398

seq1  AACCTCGGCACAGACTGTCAAAAGGAAACTCTAGAGGCCTGATAGACAGC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCGGCACAGACTGTCAAAAGGAAACTCTAGAGGCCTGATAGACAGC  448

seq1  TTAACCATGAAGAACAAACTCTGCTCTTCCCCAAGACCCATACCTCCTTT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATGAAGAACAAACTCTGCTCTTCCCCAAGACCCATACCTCCTTT  498

seq1  CCTGGTCTTCAGAGGCACCTGCGCACACACACACATTTTAAAAAATAATA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTTCAGAGGCACCTGCGCACACACACACATTTTAAAAAATAATA  548

seq1  TTTAAAAGGCTATTCTGGCTACTACACGAAGGTGTAAATGGAAAGAATAA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGCTATTCTGGCTACTACACGAAGGTGTAAATGGAAAGAATAA  598

seq1  AGGCATTGGGACGCCTCTATGGAATACCCACCTTCTGACATTTTGGTTTT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGGGACGCCTCTATGGAATACCCACCTTCTGACATTTTGGTTTT  648

seq1  TGAGCCTAGCCTTTCACACCCAAGCCATCTATCTCTCTACCCTGCCAATG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTAGCCTTTCACACCCAAGCCATCTATCTCTCTACCCTGCCAATG  698

seq1  AATGAATAACCTGGGTGTCAGTACTCAACTCCTCTTACGAAAAAGCGACA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATAACCTGGGTGTCAGTACTCAACTCCTCTTACGAAAAAGCGACA  748

seq1  GAATTTAGCATCTCGCTCACAACCCGCGGCGCTAGCCAACACTAATTCAT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAGCATCTCGCTCACAACCCGCGGCGCTAGCCAACACTAATTCAT  798

seq1  CAAGATGAAAAACAGAAGTCCGGGGATCATCTCCTGATCTTGCCCATGCC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGAAAAACAGAAGTCCGGGGATCATCTCCTGATCTTGCCCATGCC  848

seq1  GTGAGGAAGTAGCAAATCACTTAGAAAGCCGGTCGTGGCAGGGTTCTGGG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAAGTAGCAAATCACTTAGAAAGCCGGTCGTGGCAGGGTTCTGGG  898

seq1  CGAGACAGTAGGGGACGGGGAAAGACCGGGGGAGGGTCCTCTCGGGAACA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGTAGGGGACGGGGAAAGACCGGGGGAGGGTCCTCTCGGGAACA  948

seq1  GATGCACCTCGGGGTGCAGAGGGCAGTGGGCCGTCTGGGGCTGGGAAGAC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACCTCGGGGTGCAGAGGGCAGTGGGCCGTCTGGGGCTGGGAAGAC  998

seq1  ACGGGCTGTCCGAGCACCCCGAAAGGCTTGCCGCCGCATCTGGCGGGGAG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTGTCCGAGCACCCCGAAAGGCTTGCCGCCGCATCTGGCGGGGAG  1048

seq1  GGTGGGCGCTGGAGAGAACCCAGCCAATCAGCGCCACGGGGCTGATGGAA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCGCTGGAGAGAACCCAGCCAATCAGCGCCACGGGGCTGATGGAA  1098

seq1  CGGCAGTGCGCCCGCGCGCGCCGAATGTTTACGCGGAATTC  1121
      |||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGTGCGCCCGCGCGCGCCGAATGTTTACGCGGAATTC  1139