BAC Information

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BAC

Clone NameB6Ng01-307G06
Chromosome8 (Build37)
Map Location 19,332,866 - 19,461,395
singlet/doubletdoublet
Overlap geneLOC100040504, LOC100040514, Defb8
Upstream geneLOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps
Downstream geneLOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307G06.bB6Ng01-307G06.g
ACCGA100176GA100177
length1,1321,128
definitionB6Ng01-307G06.b B6Ng01-307G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,332,866 - 19,333,988)(19,460,281 - 19,461,395)
sequence
gaattccactcaccattgatgtcaggatcgcctggtgagtcttctgggga
cagtggaaccatctgccaagtttgtgcccaagtaacaagtaattgtggaa
gtggcaatcatttacatttaaattgcttaagaagtcactataaagagtca
tcaaataggttcaacatgtgctctaagtagaatccccagattagaggaac
accaaagggttcaaggagaatcaaggagttatgtgtggcctgcccacact
tccaggtctttaccttcctcttacatgtatgaaaacactaaaatataacc
ttaaatcaaaggggtcatttttctgtgatctacatttttgtgaagagaaa
aaaaacaaggtaagcatcttttctgcttttttagttagtaggctcctgca
tcccatgagaagggtctcaaagatgacattcaggcttaagggtcttacct
ttctgatccatctttgactcttcaccccttctttacaccaatagcagagc
agttcaatagccaatcacctaggagcatacactgaaatgaaatatgttgg
aactcaggtccatttgtaagtttttctcagctgcactgatgtacttccgt
atttaaaagtctttcagcatgaaactttgaccatgtgtccagagtgttcc
aggaaatgagggaaagctccatagagaagtggacagcgaatcttgcattg
gccgtcaggtggaatggctatactaaaggtttgtgtttttgcagtagtct
tcagagaactcattgcagtagcattgggcatcaagctgcagtgtactgag
ctctaaatattacctcattagttgcaaagacaacattccagaaaggcaaa
ggagattttgtaaagggggctagagactacaaattaatagatcttctgag
aatcagtgaaaatttgagctcatgaaagccaacatagctccttgttagct
cttgggaatttggtaggcttgaggctctctctgtcacacacactcttttt
attttttttttaactagagttaaattagttaccttaagagactgaatggg
gccaagagataaacatgggaagttatcccaatatatatgcctagtaaatt
gggtgtgtgggatgttagaaactagaagtttt
gaattcttatttatctagtcgaggactagataacacccatttgcccattg
ttgctcactttaagaaacttgtactgcatagctctgtggctgaggcttaa
ttactggtttcagaaagtatgaaagagtacacaggaaatgtgtggcctac
aaagcagggcttatgttttatgacaatgactagaatacatattcaatgaa
catgtaaataaggatttgaaaactagttctcagtgaacctcctcagaacc
taagttacaaccactagaattatttagggcattcaacagagtgacttagg
acattgcactatagtgagattgtacaacaattcacatgtgagactgtgaa
ggttctaacagagtgattggtgtacatttatcaaggcattctttgaaagg
actgcatgcaaccttttttggccactaaataaggctaaacaggtatctag
agccatatgggcaaaacactcatgcccttgttccttgagacaaaatgtct
tctgaatgtcccactggctggcagatggcagagagattggaactagctag
tcttaggaagtgatgtgtgcttagatgcattatgcctcaaccagtactga
ccatttataaggacaatattagacacagcatgatcagaatggacattcca
tgctggagatgcactgactttctaccatatagtgcctaagagggaaaaca
gagctttgagatgacctcaaatcctctgacactgctatcagaatgcaggt
ttgtcctaggtaatattgaggataaacttggtcatttttccaccaggagc
aaaatctcacacttgtcaacatgctgcattagcctccaagatttttttat
tttttttggaaaatacataataaataaaaaaaagccctccaagattttga
tgtgtaatatttccatttttctccttctgagatgatgctgtgaccagaaa
tgggtttaagttctactaaaatttaatgtatgggcatcatactcacaaag
ttttattgtcattcacaagtggagttcttctggcagagattgggataaaa
aggaagagcctccaagggatagtttatgctgattaggatgacagactgga
tttaagaataaaggttgcaatgtcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19332866_19333988
seq2: B6Ng01-307G06.b_45_1176

seq1  GAATTCCACTCACCATTGATGTCAGGATCGCCTGGTGAGTCTTCTGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCACCATTGATGTCAGGATCGCCTGGTGAGTCTTCTGGGGA  50

seq1  CAGTGGAACCATCTGCCAAGTTTGTGCCCAAGTAACAAGTAATTGTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAACCATCTGCCAAGTTTGTGCCCAAGTAACAAGTAATTGTGGAA  100

seq1  GTGGCAATCATTTACATTTAAATTGCTTAAGAAGTCACTATAAAGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAATCATTTACATTTAAATTGCTTAAGAAGTCACTATAAAGAGTCA  150

seq1  TCAAATAGGTTCAACATGTGCTCTAAGTAGAATCCCCAGATTAGAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGGTTCAACATGTGCTCTAAGTAGAATCCCCAGATTAGAGGAAC  200

seq1  ACCAAAGGGTTCAAGGAGAATCAAGGAGTTATGTGTGGCCTGCCCACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGGTTCAAGGAGAATCAAGGAGTTATGTGTGGCCTGCCCACACT  250

seq1  TCCAGGTCTTTACCTTCCTCTTACATGTATGAAAACACTAAAATATAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCTTTACCTTCCTCTTACATGTATGAAAACACTAAAATATAACC  300

seq1  TTAAATCAAAGGGGTCATTTTTCTGTGATCTACATTTTTGTGAAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCAAAGGGGTCATTTTTCTGTGATCTACATTTTTGTGAAGAGAAA  350

seq1  AAAAACAAGGTAAGCATCTTTTCTGCTTTTTTAGTTAGTAGGCTCCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGGTAAGCATCTTTTCTGCTTTTTTAGTTAGTAGGCTCCTGCA  400

seq1  TCCCATGAGAAGGGTCTCAAAGATGACATTCAGGCTTAAGGGTCTTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGAGAAGGGTCTCAAAGATGACATTCAGGCTTAAGGGTCTTACCT  450

seq1  TTCTGATCCATCTTTGACTCTTCACCCCTTCTTTACACCAATAGCAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCCATCTTTGACTCTTCACCCCTTCTTTACACCAATAGCAGAGC  500

seq1  AGTTCAATAGCCAATCACCTAGGAGCATACACTGAAATGAAATATGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATAGCCAATCACCTAGGAGCATACACTGAAATGAAATATGTTGG  550

seq1  AACTCAGGTCCATTTGTAAGTTTTTCTCAGCTGCACTGATGTACTTCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGTCCATTTGTAAGTTTTTCTCAGCTGCACTGATGTACTTCCGT  600

seq1  ATTTAAAAGTCTTTCAGCATGAAACTTTGACCATGTGTCCAGAGTGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAGTCTTTCAGCATGAAACTTTGACCATGTGTCCAGAGTGTTCC  650

seq1  AGGAAATGAGGGAAAGCTCCATAGAGAAGTGGACAGCGAATCTTGCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGAGGGAAAGCTCCATAGAGAAGTGGACAGCGAATCTTGCATTG  700

seq1  GCCGTCAGGTGGAATGGCTATACTAAAGGTTTGTGTTTTTGCAGGTAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCGTCAGGTGGAATGGCTATACTAAAGGTTTGTGTTTTTGCA-GTAGTC  749

seq1  TTCAGAGAACTCATTGCAGTAGCATTGGGCATCAAGCTGCAGTGTACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAACTCATTGCAGTAGCATTGGGCATCAAGCTGCAGTGTACTGA  799

seq1  GCTCTAAATATTACCTCATTAGTTGCAAAGACAACATTCCAGAAAGGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAATATTACCTCATTAGTTGCAAAGACAACATTCCAGAAAGGCAA  849

seq1  AGGAGATTTTGTAAAGGGGGCTAGAGACTACAAATTAATAGATCTTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTTTGTAAAGGGGGCTAGAGACTACAAATTAATAGATCTTCTGA  899

seq1  GAATCAGTGAAAATTTGAGCTCATGAAAGCCAACATAGCTCCTTGTTAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGTGAAAATTTGAGCTCATGAAAGCCAACATAGCTCCTTGTTAGC  949

seq1  TCTTTGGAATTTTGTAGGCTTGAGGCTCTCTCTGTCACACACACTCTTT-  999
      |||| ||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TCTTGGGAATTTGGTAGGCTTGAGGCTCTCTCTGTCACACACACTCTTTT  999

seq1  --TATTTTTTTTAACTAGAGTTAAATTAGTAACTTAAAGAGACTGAA-GG  1046
        | |||||||||||||||||||||||||| || | ||||||||||| ||
seq2  TATTTTTTTTTTAACTAGAGTTAAATTAGTTACCTTAAGAGACTGAATGG  1049

seq1  GGGCAAGAGATAAACAT-GGAAG-TATCCCA--ATATATGCCTAGTAAAT  1092
      || |||||||||||||| ||||| |||||||  |||||||||||||||||
seq2  GGCCAAGAGATAAACATGGGAAGTTATCCCAATATATATGCCTAGTAAAT  1099

seq1  TTGGTGTGT-GGATGTTAGGAACTAG-AGTTTT  1123
      | ||||||| ||||||||| |||||| ||||||
seq2  TGGGTGTGTGGGATGTTAGAAACTAGAAGTTTT  1132

seq1: chr8_19460281_19461395
seq2: B6Ng01-307G06.g_63_1190 (reverse)

seq1  TTATGACA-TGCAA-CTTTA-TCTT-AATCCAGCCCTGTCATTCCCTAAT  46
      |||||||| ||||| ||||| |||| |||||||  |||||||  ||||||
seq2  TTATGACATTGCAACCTTTATTCTTAAATCCAG-TCTGTCAT--CCTAAT  47

seq1  CCAGCATAAACTATCCC-TGGAGGCTCTTCCTTTTTATCCCAATCCTCTG  95
       |||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  -CAGCATAAACTATCCCTTGGAGGCTCTTCCTTTTTATCCCAAT-CTCTG  95

seq1  CCAGAAG-ACTCCACTTGTGAATGACA--TAAACTTTGTGAGTATGATTG  142
      ||||||| |||||||||||||||||||   ||||||||||||||||||  
seq2  CCAGAAGAACTCCACTTGTGAATGACAATAAAACTTTGTGAGTATGATGC  145

seq1  CCATACATT-AATTTTAGTAGAACTTAA--CCA-TTCTGGTCACAGCATC  188
      ||||||||| ||||||||||||||||||  ||| ||||||||||||||||
seq2  CCATACATTAAATTTTAGTAGAACTTAAACCCATTTCTGGTCACAGCATC  195

seq1  ATCTCAGAAGGAG-AAAATGG-AATATTACACATC-AAATCTTGGA-GGC  234
      ||||||||||||| ||||||| ||||||||||||| |||||||||| |||
seq2  ATCTCAGAAGGAGAAAAATGGAAATATTACACATCAAAATCTTGGAGGGC  245

seq1  TTTTTTTTATTTATTATGTATTTTCCAAAAAAA--TAAAAAATCTTGGAG  282
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  TTTTTTTTATTTATTATGTATTTTCCAAAAAAAATAAAAAAATCTTGGAG  295

seq1  GCTAATGCAGCATGTTGACAAGTGTGAGATTTTGCTCCTGGTGGAAAAAT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGCAGCATGTTGACAAGTGTGAGATTTTGCTCCTGGTGGAAAAAT  345

seq1  GACCAAGTTTATCCTCAATATTACCTAGGACAAACCTGCATTCTGATAGC  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTTTATCCTCAATATTACCTAGGACAAACCTGCATTCTGATAGC  395

seq1  AGTGTCAGAGGATTTGAGGTCATCTCAAAGCTCTGTTTTCCCTCTTAGGC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGAGGATTTGAGGTCATCTCAAAGCTCTGTTTTCCCTCTTAGGC  445

seq1  ACTATATGGTAGAAAGTCAGTGCATCTCCAGCATGGAATGTCCATTCTGA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGGTAGAAAGTCAGTGCATCTCCAGCATGGAATGTCCATTCTGA  495

seq1  TCATGCTGTGTCTAATATTGTCCTTATAAATGGTCAGTACTGGTTGAGGC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGTGTCTAATATTGTCCTTATAAATGGTCAGTACTGGTTGAGGC  545

seq1  ATAATGCATCTAAGCACACATCACTTCCTAAGACTAGCTAGTTCCAATCT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCATCTAAGCACACATCACTTCCTAAGACTAGCTAGTTCCAATCT  595

seq1  CTCTGCCATCTGCCAGCCAGTGGGACATTCAGAAGACATTTTGTCTCAAG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATCTGCCAGCCAGTGGGACATTCAGAAGACATTTTGTCTCAAG  645

seq1  GAACAAGGGCATGAGTGTTTTGCCCATATGGCTCTAGATACCTGTTTAGC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGGCATGAGTGTTTTGCCCATATGGCTCTAGATACCTGTTTAGC  695

seq1  CTTATTTAGTGGCCAAAAAAGGTTGCATGCAGTCCTTTCAAAGAATGCCT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAGTGGCCAAAAAAGGTTGCATGCAGTCCTTTCAAAGAATGCCT  745

seq1  TGATAAATGTACACCAATCACTCTGTTAGAACCTTCACAGTCTCACATGT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATGTACACCAATCACTCTGTTAGAACCTTCACAGTCTCACATGT  795

seq1  GAATTGTTGTACAATCTCACTATAGTGCAATGTCCTAAGTCACTCTGTTG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTGTACAATCTCACTATAGTGCAATGTCCTAAGTCACTCTGTTG  845

seq1  AATGCCCTAAATAATTCTAGTGGTTGTAACTTAGGTTCTGAGGAGGTTCA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTAAATAATTCTAGTGGTTGTAACTTAGGTTCTGAGGAGGTTCA  895

seq1  CTGAGAACTAGTTTTCAAATCCTTATTTACATGTTCATTGAATATGTATT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTAGTTTTCAAATCCTTATTTACATGTTCATTGAATATGTATT  945

seq1  CTAGTCATTGTCATAAAACATAAGCCCTGCTTTGTAGGCCACACATTTCC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATTGTCATAAAACATAAGCCCTGCTTTGTAGGCCACACATTTCC  995

seq1  TGTGTACTCTTTCATACTTTCTGAAACCAGTAATTAAGCCTCAGCCACAG  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTCTTTCATACTTTCTGAAACCAGTAATTAAGCCTCAGCCACAG  1045

seq1  AGCTATGCAGTACAAGTTTCTTAAAGTGAGCAACAATGGGCAAATGGGTG  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCAGTACAAGTTTCTTAAAGTGAGCAACAATGGGCAAATGGGTG  1095

seq1  TTATCTAGTCCTCGACTAGATAAATAAGAATTC  1115
      |||||||||||||||||||||||||||||||||
seq2  TTATCTAGTCCTCGACTAGATAAATAAGAATTC  1128