BAC Information

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BAC

Clone NameB6Ng01-307H15
Chromosome8 (Build37)
Map Location 62,395,198 - 62,516,277
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665116, LOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307H15.bB6Ng01-307H15.g
ACCGA100238GA100239
length1,1291,002
definitionB6Ng01-307H15.b B6Ng01-307H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,515,152 - 62,516,277)(62,395,198 - 62,396,095)
sequence
gaattccttactgccttgagggttctaaaaggatgctttttcatgtttta
tccaggaatttcaatgtgttcatttgttgtcagctagggttattcctgat
ttctgtggctttcatatgtaaaatggctttatgcaggtatttctaagttt
tgttcaaattttctttttctaaaacacaaggaatcatgtgggcagtttga
gttagtgagaactgacactcacagttgccactcttaaaatgcttactttg
tgttttgagattcaaatctcaaccaagtacagatttgcttgccaataaag
cattttgactttgttaaaaaatgctctctgtggagcttgaaagttctctt
gcctcagccatatatcataagtttgagagtgaagcagcaatcgcctgaga
cctaaatttaatctttgacggttcattcatgtccttattatgaaaaactt
catattggcaggaagttgatgggctccaacgttctgaggtggaatgttgc
tataaaggagtgaatttatgattgctgcatgaaaataacacatttatgca
aaataattctgtaaagcaaaaacatctgcttctgcatttaaggaacataa
tcacacaagagtatagagagaataataagtgaatataatttaaaccccaa
agcctcttcactgggacctttaaaaagataatgtgaaggtattgtctttg
catgggcagatactgaaaaattcataaagtgacagagatctgaagtagac
ctgctgctgcttaaagcagctgatacaatctagaggaaagcatgtgcagt
ctagtgaagagacctcatatactctgtggaattttgatttaaaatgaagt
gcctatgtgttttcaaacggttgtcccatctttgaatataccatttctag
atttctcaggaacctggaaacttaatctcagccatgtaagaagacctaga
ggttctattccaaaagaatttaaaaatttcatctcagaagtgcctttgaa
atattgtgattcataatcaagtcatagttcatttttaaaatgggaaatag
aacaaaacagtattttctattagccatgaggatatggtaaatatgatgga
aaatgcctagtctttgtctgcactatgct

gaattcattttgagaaagatcctttccttgctatattgtgacaaccaaca
aacaggaataataaatgataagcattcaggatgtagataagtcataattc
tctgaatatctctttcgctgcaccatctacttacttttgcaagttactta
agaactctaaatcttaaaagttacacttattaagtagaggtaccaattca
cctgagaaataactgagtactttatacacactcttaagcataatgctcta
gaatttggtcaaaataaaagttaagtattaaaagtatagaaaccccactt
agttcatacatgttacactcactcatatgtggacagcacacaaaaaatag
gaaatttcaaaaattttattttagagaaaactgattaggtttatgtaaac
aatttccatcttacgactgttaaaatggctaggattgaaaactccagtga
tatacatactggtgaggatgtggagaaggggaacactcctctacttctag
ttggagtgaaaacttgtacaaccactttggaaatcactttggcagtttct
caggaaactgggagtagttctaccttaagacccagttataccacccctgg
gcatatacccaaaatatgctccatcatctcacaaagatacttgctcaact
atctttatagcagctttattcgtaatagccagaaactggaaacaagttag
atgtccttcaactgaagagtggataaagaaaatgtagtacagctacacaa
tggaaaactattcagcttataaaaaccaaaacaccatgaattttgcaggc
aaatgtatgaaaattgagaatatctttctgagtgaggtaaacgcaatccc
caaagaacatatttggtatgtactcacttataagtggatattgggctata
aaatacaggatacccatgttacactccacagatgtaaagaagctaaacag
cataaaaggcacaagcaaagatgcttgaatttcacttaaagcagaaaata
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_62515152_62516277
seq2: B6Ng01-307H15.b_44_1172 (reverse)

seq1  AGCATAGTGCAGACAAAGACTAGGCATTTT-CATCATATTTACCTTTATC  49
      |||||||||||||||||||||||||||||| |||||||||||||  ||||
seq2  AGCATAGTGCAGACAAAGACTAGGCATTTTCCATCATATTTACC-ATATC  49

seq1  CTCATGGCTAATAG-AAATACTGGTTTTGTCTATTT-CCATTTTAAAAAT  97
      |||||||||||||| |||||||| |||  ||||||| |||||||||||||
seq2  CTCATGGCTAATAGAAAATACTGTTTTGTTCTATTTCCCATTTTAAAAAT  99

seq1  GAACTATGACTTGATTATGAATCACAATATTTC-AAGGCACCTTCTGAGA  146
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  GAACTATGACTTGATTATGAATCACAATATTTCAAAGGCA-CTTCTGAGA  148

seq1  TGAAATTTTT-AATTCTTTTGGAATAGAACCTCTAGGTCTTCTTACATGG  195
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTTTAAATTCTTTTGGAATAGAACCTCTAGGTCTTCTTACATGG  198

seq1  CTGAGATTAAGTTTCCAGGTTCCTGAGAAATCTAGAAATGGTATATTCAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTAAGTTTCCAGGTTCCTGAGAAATCTAGAAATGGTATATTCAA  248

seq1  AGATGGGACAACCGTTTGAAAACACATAGGCACTTCATTTTAAATCAAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGACAACCGTTTGAAAACACATAGGCACTTCATTTTAAATCAAAA  298

seq1  TTCCACAGAGTATATGAGGTCTCTTCACTAGACTGCACATGCTTTCCTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGAGTATATGAGGTCTCTTCACTAGACTGCACATGCTTTCCTCT  348

seq1  AGATTGTATCAGCTGCTTTAAGCAGCAGCAGGTCTACTTCAGATCTCTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTATCAGCTGCTTTAAGCAGCAGCAGGTCTACTTCAGATCTCTGT  398

seq1  CACTTTATGAATTTTTCAGTATCTGCCCATGCAAAGACAATACCTTCACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATGAATTTTTCAGTATCTGCCCATGCAAAGACAATACCTTCACA  448

seq1  TTATCTTTTTAAAGGTCCCAGTGAAGAGGCTTTGGGGTTTAAATTATATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTTAAAGGTCCCAGTGAAGAGGCTTTGGGGTTTAAATTATATT  498

seq1  CACTTATTATTCTCTCTATACTCTTGTGTGATTATGTTCCTTAAATGCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTATTCTCTCTATACTCTTGTGTGATTATGTTCCTTAAATGCAG  548

seq1  AAGCAGATGTTTTTGCTTTACAGAATTATTTTGCATAAATGTGTTATTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGTTTTTGCTTTACAGAATTATTTTGCATAAATGTGTTATTTT  598

seq1  CATGCAGCAATCATAAATTCACTCCTTTATAGCAACATTCCACCTCAGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGCAATCATAAATTCACTCCTTTATAGCAACATTCCACCTCAGAA  648

seq1  CGTTGGAGCCCATCAACTTCCTGCCAATATGAAGTTTTTCATAATAAGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGAGCCCATCAACTTCCTGCCAATATGAAGTTTTTCATAATAAGGA  698

seq1  CATGAATGAACCGTCAAAGATTAAATTTAGGTCTCAGGCGATTGCTGCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGAACCGTCAAAGATTAAATTTAGGTCTCAGGCGATTGCTGCTT  748

seq1  CACTCTCAAACTTATGATATATGGCTGAGGCAAGAGAACTTTCAAGCTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCAAACTTATGATATATGGCTGAGGCAAGAGAACTTTCAAGCTCC  798

seq1  ACAGAGAGCATTTTTTAACAAAGTCAAAATGCTTTATTGGCAAGCAAATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGCATTTTTTAACAAAGTCAAAATGCTTTATTGGCAAGCAAATC  848

seq1  TGTACTTGGTTGAGATTTGAATCTCAAAACACAAAGTAAGCATTTTAAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGGTTGAGATTTGAATCTCAAAACACAAAGTAAGCATTTTAAGA  898

seq1  GTGGCAACTGTGAGTGTCAGTTCTCACTAACTCAAACTGCCCACATGATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAACTGTGAGTGTCAGTTCTCACTAACTCAAACTGCCCACATGATT  948

seq1  CCTTGTGTTTTAGAAAAAGAAAATTTGAACAAAACTTAGAAATACCTGCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTTTTAGAAAAAGAAAATTTGAACAAAACTTAGAAATACCTGCA  998

seq1  TAAAGCCATTTTACATATGAAAGCCACAGAAATCAGGAATAACCCTAGCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCATTTTACATATGAAAGCCACAGAAATCAGGAATAACCCTAGCT  1048

seq1  GACAACAAATGAACACATTGAAATTCCTGGATAAAACATGAAAAAGCATC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAAATGAACACATTGAAATTCCTGGATAAAACATGAAAAAGCATC  1098

seq1  CTTTTAGAACCCTCAAGGCAGTAAGGAATTC  1126
      |||||||||||||||||||||||||||||||
seq2  CTTTTAGAACCCTCAAGGCAGTAAGGAATTC  1129


seq1: chr8_62395198_62396095
seq2: B6Ng01-307H15.g_67_965

seq1  GAATTCATTTTGAGAAAGATCCTTTCCTTGCTATATTGTGACAACCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGAGAAAGATCCTTTCCTTGCTATATTGTGACAACCAACA  50

seq1  AACAGGAATAATAAATGATAAGCATTCAGGATGTAGATAAGTCATAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAATAATAAATGATAAGCATTCAGGATGTAGATAAGTCATAATTC  100

seq1  TCTGAATATCTCTTTCGCTGCACCATCTACTTACTTTTGCAAGTTACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATATCTCTTTCGCTGCACCATCTACTTACTTTTGCAAGTTACTTA  150

seq1  AGAACTCTAAATCTTAAAAGTTACACTTATTAAGTAGAGGTACCAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTAAATCTTAAAAGTTACACTTATTAAGTAGAGGTACCAATTCA  200

seq1  CCTGAGAAATAACTGAGTACTTTATACACACTCTTAAGCATAATGCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAATAACTGAGTACTTTATACACACTCTTAAGCATAATGCTCTA  250

seq1  GAATTTGGTCAAAATAAAAGTTAAGTATTAAAAGTATAGAAACCCCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGTCAAAATAAAAGTTAAGTATTAAAAGTATAGAAACCCCACTT  300

seq1  AGTTCATACATGTTACACTCACTCATATGTGGACAGCACACAAAAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATACATGTTACACTCACTCATATGTGGACAGCACACAAAAAATAG  350

seq1  GAAATTTCAAAAATTTTATTTTAGAGAAAACTGATTAGGTTTATGTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCAAAAATTTTATTTTAGAGAAAACTGATTAGGTTTATGTAAAC  400

seq1  AATTTCCATCTTACGACTGTTAAAATGGCTAGGATTGAAAACTCCAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCATCTTACGACTGTTAAAATGGCTAGGATTGAAAACTCCAGTGA  450

seq1  TATACATACTGGTGAGGATGTGGAGAAGGGGAACACTCCTCTACTTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATACTGGTGAGGATGTGGAGAAGGGGAACACTCCTCTACTTCTAG  500

seq1  TTGGAGTGAAAACTTGTACAACCACTTTGGAAATCACTTTGGCAGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGAAAACTTGTACAACCACTTTGGAAATCACTTTGGCAGTTTCT  550

seq1  CAGGAAACTGGGAGTAGTTCTACCTTAAGACCCAGTTATACCACCCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACTGGGAGTAGTTCTACCTTAAGACCCAGTTATACCACCCCTGG  600

seq1  GCATATACCCAAAATATGCTCCATCATCTCACAAAGATACTTGCTCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACCCAAAATATGCTCCATCATCTCACAAAGATACTTGCTCAACT  650

seq1  ATCTTTATAGCAGCTTTATTCGTAATAGCCAGAAACTGGAAACAAGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATAGCAGCTTTATTCGTAATAGCCAGAAACTGGAAACAAGTTAG  700

seq1  ATGTCCTTCAACTGAAGAGTGGATAAAGAAAATGTAGTACAGCTACACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTCAACTGAAGAGTGGATAAAGAAAATGTAGTACAGCTACACAA  750

seq1  TGGAAAACTATTCAGCTTATAAAAACCAAAACACCATGAATTTTGCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACTATTCAGCTTATAAAAACCAAAACACCATGAATTTTGCAGGC  800

seq1  AAATGTATGAAAATTGAGAATATCTTTCTGAGTGAGGTAAACGCAATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATGAAAATTGAGAATATCTTTCTGAGTGAGGTAAACGCAATCCC  850

seq1  CAAAGAACATATTTGGTATGTACTCACTTATAAGTGGATATT-GGCTAT  898
      |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAAGAACATATTTGGTATGTACTCACTTATAAGTGGATATTGGGCTAT  899


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