BAC Information

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BAC

Clone NameB6Ng01-307N02
Chromosome8 (Build37)
Map Location 17,886,809 - 18,056,391
singlet/doubletdoublet
Overlap geneLOC665638
Upstream geneCsmd1
Downstream geneLOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307N02.bB6Ng01-307N02.g
ACCGA100487GA100488
length1,0951,144
definitionB6Ng01-307N02.b B6Ng01-307N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,055,290 - 18,056,391)(17,886,809 - 17,887,949)
sequence
gaattcttagattatactatataaaaattctcttatttgtttcttttttc
cttttttatattaaatattatatatttgtatgcaatcattttatgagttt
cataaagatattttattcaataatagcctctcctttgtctgatgcttcac
cccttttctactgctacgccctttatggtccccaaatagtccccttatac
atttatgtcacacacacacacacatgtatgtgtgcatgtgtcatgcatta
ctataagaaccacatgtgagagaatgcatatggtctttattgttctgagg
tttattctttatttctagtaaaaatgataaattatatcatatctttaaaa
aagataaaaaaggaataattttcttatagtgtagtcataatctgaacatt
tctgaacctagatatttccccaagtaagagttaatcacattatagtaagg
aatgtaattttgggaagtgttaagaatagagcaaaagagatgaaagccac
ataaactgaattcagaaagagaagtagcatgaatgattattacacagccc
ataataaccttcacaagagtgtatgcttcatgctgaacttgatgatttct
atgaaacacaagtaagacaatacctttttctctccacacagatagtagta
cattgactcttgatgaaaattcatgttggccaagggattcttttaatatc
attatcaatgagaaggatgacatgaaaagtctttgtcttagttagggttt
tattgctgtgaagagagaccatgacctaggcaactcttatgaaggcaaac
atgtaattgggcctggatcacagttttgaaagtttagtacattatcatca
tggtggaaaccatgaatcatgctggcagacttcgtgctggaggagttgag
agttatacatcttgatccaaagggcagcaggaagagactgttccacaggc
agccatagaggaaatcttcaagtcccatctacacagggacacatttcctt
ccaaccagaagcacacctacatgatcaggtcaactctcatagtgccattc
cctgtgggttcagcaatcaaccaatgatctatggggtcaacctat

gaattcacttggtggctttcaacattaagtcaaaattcaagaaactcctc
tcagtgtttttgttttaggaataaaatgttttctttaccggagaagaaaa
tacagaatgagagaggagaggtgtcctgtcatcccacaaaaagttcctta
aaaatagaagacagaaaaatctcacactattaaccattaaaccaaaagat
aatgtacattagtggttgtttgacatgacactacaaagataggaggacac
tgagttgaaaaacagacacaactgtactcagttaatggcacaagtcttca
aataaagggacttgagagcatgtgtaccagaagctccatccaggactggg
atataactacctcctcgtgactgggagctaagtgtctatctaaatgtcag
gcaaatgtctcatacattaatagatgggaataactggaaacattcttcaa
gcttatatctcttccttccaaagaaacaggtgtggacatgatcttcctta
accatgactcttctgtgactcctcacttctctagaaggtgagggtgtggt
ttgatagagattcacatctcaatgggacatgcgaaatatgcaattgctta
ttttcttattttttaaaaagtaattttaaataaattacttattccctttt
gaaagaggcattccaagataggttagagagactccttcccattttccttc
ttgtctaacatttgtatttgggggacgttttgttttattgacagtctcac
caagcccaggttggccttgaacttcatacaaagccagctgtgaacaggaa
tacatgatcttgtggctttcacctctcagtgctgggctttaggagtggca
caggtttatgttcaggacataatccagggtttagtgcttcactggacagg
tgctctcttctttcctaccaaactacttcctccactctatttgtgctcac
agtggaggtcattgattccaaataaagttcctgaacacatattggctcct
gccatcatcctttagatgtaatgtttctctccagctatctctatgatata
cctaaaaccacctcagtctataaaacctgaccaaagaagaaagttaaatt
gaaccttagtagatcttttatatcctatggtatcctaatgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18055290_18056391
seq2: B6Ng01-307N02.b_48_1142 (reverse)

seq1  ATAGGTTTGGCCCCCATAGATTCATGTGTTTGAATGCTTGACCCACAGGG  50
      |||||||  | ||||||||| |||| || |||| ||||  ||||||||||
seq2  ATAGGTT--GACCCCATAGA-TCAT-TGGTTGATTGCTGAACCCACAGGG  46

seq1  AATGGCACTATGAGGAGGTTTGACCTTGATCATGTAGGTGTGGCCTTCCT  100
      ||||||||||||| |||  |||||| ||||||||||||||||  ||| ||
seq2  AATGGCACTATGA-GAG--TTGACC-TGATCATGTAGGTGTG--CTT-CT  89

seq1  GGTTGG-AGGAAATGTGTCCCTGTGTAGATGGG-CTTTGAGGTTTCCTCT  148
      |||||| |||||||||||||||||||||||||| |||  || ||||||||
seq2  GGTTGGAAGGAAATGTGTCCCTGTGTAGATGGGACTTGAAGATTTCCTCT  139

seq1  -TGGCTGCCTGTGGAACAGTCTCTTCCTGCTG-CCTTTGGATCAAGATGT  196
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGGCTGCCTGTGGAACAGTCTCTTCCTGCTGCCCTTTGGATCAAGATGT  189

seq1  ATAACTCTCAACTCCTCCAGCACGAAGTCTGCCAGCATGATTCATGGTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCTCAACTCCTCCAGCACGAAGTCTGCCAGCATGATTCATGGTTT  239

seq1  CCACCATGATGATAATGTACTAAACTTTCAAAACTGTGATCCAGGCCCAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGATGATAATGTACTAAACTTTCAAAACTGTGATCCAGGCCCAA  289

seq1  TTACATGTTTGCCTTCATAAGAGTTGCCTAGGTCATGGTCTCTCTTCACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTTTGCCTTCATAAGAGTTGCCTAGGTCATGGTCTCTCTTCACA  339

seq1  GCAATAAAACCCTAACTAAGACAAAGACTTTTCATGTCATCCTTCTCATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAACCCTAACTAAGACAAAGACTTTTCATGTCATCCTTCTCATT  389

seq1  GATAATGATATTAAAAGAATCCCTTGGCCAACATGAATTTTCATCAAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGATATTAAAAGAATCCCTTGGCCAACATGAATTTTCATCAAGAG  439

seq1  TCAATGTACTACTATCTGTGTGGAGAGAAAAAGGTATTGTCTTACTTGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTACTACTATCTGTGTGGAGAGAAAAAGGTATTGTCTTACTTGTG  489

seq1  TTTCATAGAAATCATCAAGTTCAGCATGAAGCATACACTCTTGTGAAGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGAAATCATCAAGTTCAGCATGAAGCATACACTCTTGTGAAGGT  539

seq1  TATTATGGGCTGTGTAATAATCATTCATGCTACTTCTCTTTCTGAATTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGGCTGTGTAATAATCATTCATGCTACTTCTCTTTCTGAATTCA  589

seq1  GTTTATGTGGCTTTCATCTCTTTTGCTCTATTCTTAACACTTCCCAAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTGGCTTTCATCTCTTTTGCTCTATTCTTAACACTTCCCAAAAT  639

seq1  TACATTCCTTACTATAATGTGATTAACTCTTACTTGGGGAAATATCTAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCTTACTATAATGTGATTAACTCTTACTTGGGGAAATATCTAGG  689

seq1  TTCAGAAATGTTCAGATTATGACTACACTATAAGAAAATTATTCCTTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATGTTCAGATTATGACTACACTATAAGAAAATTATTCCTTTTT  739

seq1  TATCTTTTTTAAAGATATGATATAATTTATCATTTTTACTAGAAATAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTTAAAGATATGATATAATTTATCATTTTTACTAGAAATAAAG  789

seq1  AATAAACCTCAGAACAATAAAGACCATATGCATTCTCTCACATGTGGTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCTCAGAACAATAAAGACCATATGCATTCTCTCACATGTGGTTC  839

seq1  TTATAGTAATGCATGACACATGCACACATACATGTGTGTGTGTGTGTGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTAATGCATGACACATGCACACATACATGTGTGTGTGTGTGTGAC  889

seq1  ATAAATGTATAAGGGGACTATTTGGGGACCATAAAGGGCGTAGCAGTAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTATAAGGGGACTATTTGGGGACCATAAAGGGCGTAGCAGTAGA  939

seq1  AAAGGGGTGAAGCATCAGACAAAGGAGAGGCTATTATTGAATAAAATATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTGAAGCATCAGACAAAGGAGAGGCTATTATTGAATAAAATATC  989

seq1  TTTATGAAACTCATAAAATGATTGCATACAAATATATAATATTTAATATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAACTCATAAAATGATTGCATACAAATATATAATATTTAATATA  1039

seq1  AAAAAGGAAAAAAGAAACAAATAAGAGAATTTTTATATAGTATAATCTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAAAAGAAACAAATAAGAGAATTTTTATATAGTATAATCTAA  1089

seq1  GAATTC  1102
      ||||||
seq2  GAATTC  1095


seq1: chr8_17886809_17887949
seq2: B6Ng01-307N02.g_64_1207

seq1  GAATTCACTTGGTGGCTTTCAACATTAAGTCAAAATTCAAGAAACTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGTGGCTTTCAACATTAAGTCAAAATTCAAGAAACTCCTC  50

seq1  TCAGTGTTTTTGTTTTAGGAATAAAATGTTTTCTTTACCGGAGAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTTTTGTTTTAGGAATAAAATGTTTTCTTTACCGGAGAAGAAAA  100

seq1  TACAGAATGAGAGAGGAGAGGTGTCCTGTCATCCCACAAAAAGTTCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATGAGAGAGGAGAGGTGTCCTGTCATCCCACAAAAAGTTCCTTA  150

seq1  AAAATAGAAGACAGAAAAATCTCACACTATTAACCATTAAACCAAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAGACAGAAAAATCTCACACTATTAACCATTAAACCAAAAGAT  200

seq1  AATGTACATTAGTGGTTGTTTGACATGACACTACAAAGATAGGAGGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACATTAGTGGTTGTTTGACATGACACTACAAAGATAGGAGGACAC  250

seq1  TGAGTTGAAAAACAGACACAACTGTACTCAGTTAATGGCACAAGTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGAAAAACAGACACAACTGTACTCAGTTAATGGCACAAGTCTTCA  300

seq1  AATAAAGGGACTTGAGAGCATGTGTACCAGAAGCTCCATCCAGGACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGGACTTGAGAGCATGTGTACCAGAAGCTCCATCCAGGACTGGG  350

seq1  ATATAACTACCTCCTCGTGACTGGGAGCTAAGTGTCTATCTAAATGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTACCTCCTCGTGACTGGGAGCTAAGTGTCTATCTAAATGTCAG  400

seq1  GCAAATGTCTCATACATTAATAGATGGGAATAACTGGAAACATTCTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGTCTCATACATTAATAGATGGGAATAACTGGAAACATTCTTCAA  450

seq1  GCTTATATCTCTTCCTTCCAAAGAAACAGGTGTGGACATGATCTTCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATATCTCTTCCTTCCAAAGAAACAGGTGTGGACATGATCTTCCTTA  500

seq1  ACCATGACTCTTCTGTGACTCCTCACTTCTCTAGAAGGTGAGGGTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACTCTTCTGTGACTCCTCACTTCTCTAGAAGGTGAGGGTGTGGT  550

seq1  TTGATAGAGATTCACATCTCAATGGGACATGCGAAATATGCAATTGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAGATTCACATCTCAATGGGACATGCGAAATATGCAATTGCTTA  600

seq1  TTTTCTTATTTTTTAAAAAGTAATTTTAAATAAATTACTTATTCCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATTTTTTAAAAAGTAATTTTAAATAAATTACTTATTCCCTTTT  650

seq1  GAAAGAGGCATTCCAAGATAGGTTAGAGAGACTCCTTCCCATTTTCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGCATTCCAAGATAGGTTAGAGAGACTCCTTCCCATTTTCCTTC  700

seq1  TTGTCTAACATTTGTATTTGGGGGACGTTTTGTTTTATTGACAGTCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAACATTTGTATTTGGGGGACGTTTTGTTTTATTGACAGTCTCAC  750

seq1  CAAGCCCAGGTTGGCCTTGAACTTCATACAAAGCCAGCTGTGAACAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCAGGTTGGCCTTGAACTTCATACAAAGCCAGCTGTGAACAGGAA  800

seq1  TACATGATCTTGTGGCTTTCACCTCTCAGTGCTGGGCTTTAGGAGTGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATCTTGTGGCTTTCACCTCTCAGTGCTGGGCTTTAGGAGTGGCA  850

seq1  CAGG-TTATGTTCAGGACATAATCCAGGGTTTAGTGCTTCACTGGACAGG  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATGTTCAGGACATAATCCAGGGTTTAGTGCTTCACTGGACAGG  900

seq1  TGCTCTCT--CTTCCTACCAAACTACTTCCTCCACTCTATTTGTGCTCAC  947
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTCTTTCCTACCAAACTACTTCCTCCACTCTATTTGTGCTCAC  950

seq1  AGTGGAGGTCA-TGATCCAAAATAAAGTT-CTG-ACACATATTGGCTCCT  994
      ||||||||||| |||| | |||||||||| ||| ||||||||||||||||
seq2  AGTGGAGGTCATTGATTCCAAATAAAGTTCCTGAACACATATTGGCTCCT  1000

seq1  GCCCATCATCCTTAAGATGTAATGTTTCTCTTCAGGCTATCTCCTATGAA  1044
      | ||||||||||| ||||||||||||||||| || ||||||| ||||| |
seq2  G-CCATCATCCTTTAGATGTAATGTTTCTCTCCA-GCTATCT-CTATG-A  1046

seq1  TATTAACCTAAAACCACCTCAGTCTAATAAAACTGAGCAAAAGAGAAAGT  1094
      |||  |||||||||||||||||||||  ||| |||| ||||  |||||||
seq2  TAT--ACCTAAAACCACCTCAGTCTATAAAACCTGACCAAAGAAGAAAGT  1094

seq1  AAATTTGAAACTTAATAGATCTTTTAATAT-CTATG--ATCCT-ATGAGA  1140
       || ||||| |||| |||||||||| |||| |||||  ||||| ||||||
seq2  TAAATTGAACCTTAGTAGATCTTTT-ATATCCTATGGTATCCTAATGAGA  1143

seq1  A  1141
      |
seq2  A  1144


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