BAC Information

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BAC

Clone NameB6Ng01-308H09
Chromosome8 (Build37)
Map Location 26,807,666 - 26,969,279
singlet/doubletdoublet
Overlap geneWhsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1
Upstream geneAdam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416
Downstream geneHgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308H09.bB6Ng01-308H09.g
ACCGA100959GA100960
length510858
definitionB6Ng01-308H09.b B6Ng01-308H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,807,666 - 26,808,181)(26,968,427 - 26,969,279)
sequence
tattggaattctgaagaaaatatatttctagataattgcaaccatattgt
aaattgtttgcatgaagagttgagtttagagtatattaaacataagcagt
ctgtgtccatgtttttacatgttatctcccttttggaggataggacagaa
tcttcctggcctaactaacctcttgcttaagtggtcctcctgccccagcc
tctcaagtgggtgagaccaccattgttggcacttcttcttgctttgttgt
tggaggaattttgtatttttgttttgtttttgtttttgttttttagtggg
agctggagaagtggctcggcagtgcgagcactgactgcttttacagtggc
acgcacagctgtctgtaacttcaggtcctgctccacacctagcacacaca
cagggtgcatacatgtaagccagacattcaaacacatacaagtaaatttt
aaaaagtgtgtgtgcgtgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtg
gaattcttaatttttaccccaggtgggtataccccacctcagcactagca
atggaggtggcaagatacagagtgtaatgatttctatatgcttggaccag
ggagtggcaggattagaaggtgtggccctgttggagtgggcctgtcagtg
tgggcatgggctttaagaccctcaccctagctgcctggaagtcagtactc
cactaagagccttcagatgaagatgtagaactctcagctctgcctgcacc
atgcctgcctggatgctgccatgctcccacctttatgataatggattgaa
cctctgaacctgtaagccagccccaattaaatgttgtcctttataagact
tgccttggtcatggtgtctgttcacagcagtaaaaccctaactaagacac
agggcaaagacatgcatttatacacagaactggagttagtgcttactgag
agagagctactaggacatggctaccatttcattgacttctgtggggggag
gcgttgagggggggcggtgtgcgtacgtgagagcaaagctgcatttgaca
tccctgaagagaaaattctaaagcaattaagtttctcataaagcaggcaa
gagtggccggggtttttactcactccattgaattgatgaaatagatcaca
agagacccgatgcttagtacaaagacaaggatcacctacaaacggaaaag
gacagagggcgagagatgcaagtttattttatggtatggagtaaacaaag
ctcacaaaattgtgttttctgcttttaaaatgaggtaaatgctgttgtgt
attttttattatatgcaggcagggaaggggagaaaatgggtttgccatac
ctttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26807666_26808181
seq2: B6Ng01-308H09.b_46_561

seq1  GAATTCTATTGGAATTCTGAAGAAAATATATTTCTAGATAATTGCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGGAATTCTGAAGAAAATATATTTCTAGATAATTGCAACCA  50

seq1  TATTGTAAATTGTTTGCATGAAGAGTTGAGTTTAGAGTATATTAAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAAATTGTTTGCATGAAGAGTTGAGTTTAGAGTATATTAAACATA  100

seq1  AGCAGTCTGTGTCCATGTTTTTACATGTTATCTCCCTTTTGGAGGATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTGTGTCCATGTTTTTACATGTTATCTCCCTTTTGGAGGATAGG  150

seq1  ACAGAATCTTCCTGGCCTAACTAACCTCTTGCTTAAGTGGTCCTCCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCTTCCTGGCCTAACTAACCTCTTGCTTAAGTGGTCCTCCTGCC  200

seq1  CCAGCCTCTCAAGTGGGTGAGACCACCATTGTTGGCACTTCTTCTTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTCAAGTGGGTGAGACCACCATTGTTGGCACTTCTTCTTGCTT  250

seq1  TGTTGTTGGAGGAATTTTGTATTTTTGTTTTGTTTTTGTTTTTGTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGGAGGAATTTTGTATTTTTGTTTTGTTTTTGTTTTTGTTTTTT  300

seq1  AGTGGGAGCTGGAGAAGTGGCTCGGCAGTGCGAGCACTGACTGCTTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGCTGGAGAAGTGGCTCGGCAGTGCGAGCACTGACTGCTTTTAC  350

seq1  AGTGGCACGCACAGCTGTCTGTAACTTCAGGTCCTGCTCCACACCTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACGCACAGCTGTCTGTAACTTCAGGTCCTGCTCCACACCTAGCA  400

seq1  CACACACAGGGTGCATACATGTAAGCCAGACATTCAAACACATACAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGGGTGCATACATGTAAGCCAGACATTCAAACACATACAAGTA  450

seq1  AATTTTAAAAAGTGTGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAAAGTGTGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGTG  500

seq1  TGTGTGTGTGTGTGTG  516
      ||||||||||||||||
seq2  TGTGTGTGTGTGTGTG  516

seq1: chr8_26968427_26969279
seq2: B6Ng01-308H09.g_70_927 (reverse)

seq1  AAGGAAAGGTAAGGCAAAACCATTTTCTCCCCTTCCCTGCCTGCATATAA  50
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  AAGGAAAGGTATGGCAAACCCATTTTCTCCCCTTCCCTGCCTGCATATAA  50

seq1  T-AAAAATACACAACAGCATTTACCTCATTT--AAAGCAGAAAACACAAT  97
      | |||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TAAAAAATACACAACAGCATTTACCTCATTTTAAAAGCAGAAAACACAAT  100

seq1  TTTGTGGGC-TTGTTTACTCCATACCATAAAATAAACTTGCATCTCTCG-  145
      |||||| || ||||||||||||||||||||||||||||||||||||||| 
seq2  TTTGTGAGCTTTGTTTACTCCATACCATAAAATAAACTTGCATCTCTCGC  150

seq1  CCTCTGTCCTTTTCCGTTTGTAGGTGATCCTTGTCTTTGTACTAAGCATC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCCTTTTCCGTTTGTAGGTGATCCTTGTCTTTGTACTAAGCATC  200

seq1  GGGTCTCTTGTGATCTATTTCATCAATTCAATGGAGTGAGTAAAAACCCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTTGTGATCTATTTCATCAATTCAATGGAGTGAGTAAAAACCCC  250

seq1  GGCCACTCTTGCCTGCTTTATGAGAAACTTAATTGCTTTAGAATTTTCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTCTTGCCTGCTTTATGAGAAACTTAATTGCTTTAGAATTTTCTC  300

seq1  TTCAGGGATGTCAAATGCAGCTTTGCTCTCACGTACGCACACCGCCCCCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATGTCAAATGCAGCTTTGCTCTCACGTACGCACACCGCCCCCC  350

seq1  CTCAACGCCTCCCCCCACAGAAGTCAATGAAATGGTAGCCATGTCCTAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACGCCTCCCCCCACAGAAGTCAATGAAATGGTAGCCATGTCCTAGT  400

seq1  AGCTCTCTCTCAGTAAGCACTAACTCCAGTTCTGTGTATAAATGCATGTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTCTCAGTAAGCACTAACTCCAGTTCTGTGTATAAATGCATGTC  450

seq1  TTTGCCCTGTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTGTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGA  500

seq1  CCAAGGCAAGTCTTATAAAGGACAACATTTAATTGGGGCTGGCTTACAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCAAGTCTTATAAAGGACAACATTTAATTGGGGCTGGCTTACAGG  550

seq1  TTCAGAGGTTCAATCCATTATCATAAAGGTGGGAGCATGGCAGCATCCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGTTCAATCCATTATCATAAAGGTGGGAGCATGGCAGCATCCAG  600

seq1  GCAGGCATGGTGCAGGCAGAGCTGAGAGTTCTACATCTTCATCTGAAGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATGGTGCAGGCAGAGCTGAGAGTTCTACATCTTCATCTGAAGGC  650

seq1  TCTTAGTGGAGTACTGACTTCCAGGCAGCTAGGGTGAGGGTCTTAAAGCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGGAGTACTGACTTCCAGGCAGCTAGGGTGAGGGTCTTAAAGCC  700

seq1  CATGCCCACACTGACAGGCCCACTCCAACAGGGCCACACCTTCTAATCCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCACACTGACAGGCCCACTCCAACAGGGCCACACCTTCTAATCCT  750

seq1  GCCACTCCCTGGTCCAAGCATATAGAAATCATTACACTCTGTATCTTGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCCCTGGTCCAAGCATATAGAAATCATTACACTCTGTATCTTGCC  800

seq1  ACCTCCATTGCTAGTGCTGAGGTGGGGTATACCCACCTGGGGTAAAAATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATTGCTAGTGCTGAGGTGGGGTATACCCACCTGGGGTAAAAATT  850

seq1  AAGAATTC  853
      ||||||||
seq2  AAGAATTC  858