BAC Information

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BAC

Clone NameB6Ng01-308M22
Chromosome8 (Build37)
Map Location 102,262,518 - 102,393,879
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308M22.bB6Ng01-308M22.g
ACCGA101215GA101216
length1,0741,034
definitionB6Ng01-308M22.b B6Ng01-308M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,262,518 - 102,263,601)(102,392,855 - 102,393,879)
sequence
gaattccagccctgaggactacattagggaaaaagagaaccagcttctac
aggctgtggttttgcttccatctgcaaaccatggcacttatgtacacata
aatgaacaaacagttggacagacagataaataaataaatacataaataca
taaatacataaataaattttaaagcttaaaacctagctttatatggagat
ggaaagtgtgaatttatcattgactgtattgtgtaaaaccacaaatatat
gaaattttaagatgatatccaaatagttacagaaaaactgcatcattaat
aatcacattttaacagtatatatttataatgtatggtgattttaataatt
tcagagcatatcacaatgttgtattatgcaagaagcttttgaaaaaagtc
atctattaatatttgtaaaaagcacaaaaagaagtgtacatgatctaagg
caaagtggactctaattctgaatcctaaactagattataacaaaaaggcc
taagtaacattgttgggagacccaacaagtgactatgcatgcttctcata
gcatgaacttttccagatactaaaacaagtggggtcaactaaggaaacaa
tagttcaagaagaaggaattgtaatctttgctattaatacagcagacagt
ttaatatttagagtatccaatgaactaaaaaaaaaacaaagtaaaagaaa
agaaaacaaacaaacaaacaaaatgttcatcatcttcagaaatttggaaa
ttgcagttaaaacatctttcagattctatcacatcacagtcaaaatgggg
ataaataaattaagaaaaaaatccataaataaatattctggtaaaaactt
actataataggaatgcaaactttgaggctactctggaaatcagaaaagaa
aatcctcaaaaagcttaatgaataaatgataaataaataaataaataata
aataaataaataatttattcttatacccagctattctattttttgcatgt
gcttaaagaacttgacatagattctgctcagccacatatatggctgttgt
attcacgtagctagaatgaaaaca
gaattctctcaataacaatctgaggcagcccctgaaacatgaggttttca
tatgcttattgttcaaaaacctatttgtgtccacaaggccctgaacctac
ctggtcaattataaacccaagataaggaagaagggcacttgaagactaga
atcaaaatccaaggttagttatgtgatggttcacacacacacacacacac
acacacacacacacacacacacacacacacacatacacacacacacacac
acacacacacacacacacacacacacacaaaccaaaacaaaaaaacaaaa
caaaacaaaaaatcccgtgtgtttggaacttgcctactaacttttatgga
ggaatacagcaacactggaggtcactaagtgtgtcccatagtaagaatgc
atagctcaccagagggaattatgccactgtacttaccattgtttgacaca
ggtgaaagctgacagcttgaaagtaaatgtttcttagattaaaagctaaa
agtgtagaagtgatgttttttcctcatcaataatgttggagcacatagct
gcattctttacacagcactaggacattcaatgaggtgtaaacagttttca
caagatggttgtactaattcatgctttctgttagtaaatttggtggaatg
tcttctgtgaaaaatgagagaaataataattaatgcttaatctgactcct
gaaaggttttaaaaaacagatgctatattttgattaaattatttctaatt
tcttttcttttcttattttttactcttacagtgtcatgtaactaagactg
tgagattttatttgtataaagaattattctgccatgcagtttcttcaagg
atgttcattctatgatcttgttcccaatttcaaaaattgcaaatcatacc
atggtaccagcttctcaagagtagtacaaaaactgaaaaagccaaacaga
attcttcacaggagttattgctaacaaaaataagtcttgcttatcagtag
ttccttcaatattgattcctattaaagtggatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102262518_102263601
seq2: B6Ng01-308M22.b_49_1122

seq1  GAATTCCAGCCCTGAGGACTACATTAGGGAAAAAGAGAACCAGCTTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCTGAGGACTACATTAGGGAAAAAGAGAACCAGCTTCTAC  50

seq1  AGGCTGTGGTTTTGCTTCCATCTGCAAACCATGGCACTTATGTACACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGGTTTTGCTTCCATCTGCAAACCATGGCACTTATGTACACATA  100

seq1  AATGAACAAACAGTTGGACAGACAGATAAATAAATAAATACATAAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAACAGTTGGACAGACAGATAAATAAATAAATACATAAATACA  150

seq1  TAAATACATAAATAAATTTTAAAGCTTAAAACCTAGCTTTATATGGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATAAATAAATTTTAAAGCTTAAAACCTAGCTTTATATGGAGAT  200

seq1  GGAAAGTGTGAATTTATCATTGACTGTATTGTGTAAAACCACAAATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGTGAATTTATCATTGACTGTATTGTGTAAAACCACAAATATAT  250

seq1  GAAATTTTAAGATGATATCCAAATAGTTACAGAAAAACTGCATCATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTAAGATGATATCCAAATAGTTACAGAAAAACTGCATCATTAAT  300

seq1  AATCACATTTTAACAGTATATATTTATAATGTATGGTGATTTTAATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATTTTAACAGTATATATTTATAATGTATGGTGATTTTAATAATT  350

seq1  TCAGAGCATATCACAATGTTGTATTATGCAAGAAGCTTTTGAAAAAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCATATCACAATGTTGTATTATGCAAGAAGCTTTTGAAAAAAGTC  400

seq1  ATCTATTAATATTTGTAAAAAGCACAAAAAGAAGTGTACATGATCTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAATATTTGTAAAAAGCACAAAAAGAAGTGTACATGATCTAAGG  450

seq1  CAAAGTGGACTCTAATTCTGAATCCTAAACTAGATTATAACAAAAAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGACTCTAATTCTGAATCCTAAACTAGATTATAACAAAAAGGCC  500

seq1  TAAGTAACATTGTTGGGAGACCCAACAAGTGACTATGCATGCTTCTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACATTGTTGGGAGACCCAACAAGTGACTATGCATGCTTCTCATA  550

seq1  GCATGAACTTTTCCAGATACTAAAACAAGTGGGGTCAACTAAGGAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAACTTTTCCAGATACTAAAACAAGTGGGGTCAACTAAGGAAACAA  600

seq1  TAGTTCAAGAAGAAGGAATTGTAATCTTTGCTATTAATACAGCAGACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAAGAAGAAGGAATTGTAATCTTTGCTATTAATACAGCAGACAGT  650

seq1  TTAATATTTAGAGTATCCAATGAACTAAAAAAAAAACAAAGTAAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTAGAGTATCCAATGAACTAAAAAAAAAACAAAGTAAAAGAAA  700

seq1  AGAAAACAAACAAACAAACAAAATGTTCATCATCTTCAGAAATTTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAACAAACAAACAAAATGTTCATCATCTTCAGAAATTTGGAAA  750

seq1  TTGCAGTTAAAACATCTTTCAGATTCTATCACATCACAGTCAAAATGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTAAAACATCTTTCAGATTCTATCACATCACAGTCAAAATGGGG  800

seq1  ATAAATAAATTAAGAAAAAAATCCATAAATAAATATTCTGGTAAAAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATTAAGAAAAAAATCCATAAATAAATATTCTGGTAAAAACTT  850

seq1  ACTATAATAGGAATGCAAACTTTGAGGCTACTCTGGAAATCAGAAAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATAGGAATGCAAACTTTGAGGCTACTCTGGAAATCAGAAAAGAA  900

seq1  AATCCTCAAAAAGCTTAAATGAATAAATGAATAAATAAATAAATAAATAA  950
      |||||||||||||||| |||||||||||| |||||||||||||||||| |
seq2  AATCCTCAAAAAGCTT-AATGAATAAATG-ATAAATAAATAAATAAAT-A  947

seq1  ATAAATAAATAAAATAAATTTATCTTATAACCCAGCTATTCTATTTTTTG  1000
      |||||||||| |||||| ||  |||||| |||||||||||||||||||| 
seq2  ATAAATAAAT-AAATAATTTATTCTTAT-ACCCAGCTATTCTATTTTTT-  994

seq1  GCATGTGCTTAAAGAACTTGACATAGATTCTTGCTCAGCCACATATATGG  1050
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCATGTGCTTAAAGAACTTGACATAGATTC-TGCTCAGCCACATATATGG  1043

seq1  CTGTTGTATTCACGGTAGCTAGGAAATGAAAACA  1084
      ||||||||||||| ||||||||  ||||||||||
seq2  CTGTTGTATTCAC-GTAGCTAG--AATGAAAACA  1074

seq1: chr8_102392855_102393879
seq2: B6Ng01-308M22.g_66_1099 (reverse)

seq1  TCAT-CACTTTAATAGGAATC-ATA-TGAA-GAACTACTGATAAGCAAGA  46
      |||| |||||||||||||||| ||| |||| |||||||||||||||||||
seq2  TCATCCACTTTAATAGGAATCAATATTGAAGGAACTACTGATAAGCAAGA  50

seq1  CTTATTTT--GTAGCAATAACT-CTGTGAAGAATTCTGTTTGGCTTTTTC  93
      ||||||||   ||||||||||| |||||||||||||||||||||||||||
seq2  CTTATTTTTGTTAGCAATAACTCCTGTGAAGAATTCTGTTTGGCTTTTTC  100

seq1  AG-TTTTGTACTACTCTTGAG-AGCTGGTACCATGGTATGATTTGCAATT  141
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTTTTTGTACTACTCTTGAGAAGCTGGTACCATGGTATGATTTGCAATT  150

seq1  TTTGAAATTGGGAACAAGATCATAGAATGAACATCCTTGAAGAAACTGCA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTGGGAACAAGATCATAGAATGAACATCCTTGAAGAAACTGCA  200

seq1  TGGCAGAATAATTCTTTATACAAATAAAATCTCACAGTCTTAGTTACATG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAATAATTCTTTATACAAATAAAATCTCACAGTCTTAGTTACATG  250

seq1  ACACTGTAAGAGTAAAAAATAAGAAAAGAAAAGAAATTAGAAATAATTTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAAGAGTAAAAAATAAGAAAAGAAAAGAAATTAGAAATAATTTA  300

seq1  ATCAAAATATAGCATCTGTTTTTTAAAACCTTTCAGGAGTCAGATTAAGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATATAGCATCTGTTTTTTAAAACCTTTCAGGAGTCAGATTAAGC  350

seq1  ATTAATTATTATTTCTCTCATTTTTCACAGAAGACATTCCACCAAATTTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTATTATTTCTCTCATTTTTCACAGAAGACATTCCACCAAATTTA  400

seq1  CTAACAGAAAGCATGAATTAGTACAACCATCTTGTGAAAACTGTTTACAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGAAAGCATGAATTAGTACAACCATCTTGTGAAAACTGTTTACAC  450

seq1  CTCATTGAATGTCCTAGTGCTGTGTAAAGAATGCAGCTATGTGCTCCAAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGAATGTCCTAGTGCTGTGTAAAGAATGCAGCTATGTGCTCCAAC  500

seq1  ATTATTGATGAGGAAAAAACATCACTTCTACACTTTTAGCTTTTAATCTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGATGAGGAAAAAACATCACTTCTACACTTTTAGCTTTTAATCTA  550

seq1  AGAAACATTTACTTTCAAGCTGTCAGCTTTCACCTGTGTCAAACAATGGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTTACTTTCAAGCTGTCAGCTTTCACCTGTGTCAAACAATGGT  600

seq1  AAGTACAGTGGCATAATTCCCTCTGGTGAGCTATGCATTCTTACTATGGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGTGGCATAATTCCCTCTGGTGAGCTATGCATTCTTACTATGGG  650

seq1  ACACACTTAGTGACCTCCAGTGTTGCTGTATTCCTCCATAAAAGTTAGTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTAGTGACCTCCAGTGTTGCTGTATTCCTCCATAAAAGTTAGTA  700

seq1  GGCAAGTTCCAAACACACGGGATTTTTTGTTTTGTTTTGTTTTTTTGTTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTTCCAAACACACGGGATTTTTTGTTTTGTTTTGTTTTTTTGTTT  750

seq1  TGGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  800

seq1  ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  850

seq1  GTGAACCATCACATAACTAACCTTGGATTTTGATTCTAGTCTTCAAGTGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCATCACATAACTAACCTTGGATTTTGATTCTAGTCTTCAAGTGC  900

seq1  CCTTCTTCCTTATCTTGGGTTTATAATTGACCAGGTAGGTTCAGGGCCTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCTTATCTTGGGTTTATAATTGACCAGGTAGGTTCAGGGCCTT  950

seq1  GTGGACACAAATAGGTTTTTGAACAATAAGCATATGAAAACCTCATGTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACAAATAGGTTTTTGAACAATAAGCATATGAAAACCTCATGTTT  1000

seq1  CAGGGGCTGCCTCAGATTGTTATTGAGAGAATTC  1025
      ||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTGCCTCAGATTGTTATTGAGAGAATTC  1034