BAC Information

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BAC

Clone NameB6Ng01-309C03
Chromosome8 (Build37)
Map Location 43,378,316 - 43,537,420
singlet/doubletdoublet
Overlap geneLOC628212
Upstream genePcm1, Asah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309C03.bB6Ng01-309C03.g
ACCGA101450GA101451
length6181,063
definitionB6Ng01-309C03.b B6Ng01-309C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,536,803 - 43,537,420)(43,378,316 - 43,379,385)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttatag
atttttttttgtactggactcaagcagataccttgccagttcactgtacc
ctatttgacaggaactatacataatcttctggtgatgaaaaactacgatc
ttcagataaaaaaatagattctgattcataataggaagctatttttttac
tttgtggttgtgagaaaataactacagactgggtagcttctacaaagcag
acactgattgctcacacttcttcaagcagacagtctaatatcagtctgcc
aaaaaaatcaggttctcatgatggccccttctatttagagattactatat
tctcattgtaggttcaaatatctattcagtataacttttcatggtaactt
tttttcagttattgttattgtgacttgcccttttcccttttttccccttt
tccccttttccccctttccccttttcctctttcccccccctttccccctt
tccccttttcctctttccccccttttccccttttcccctttacccctttt
ccccttttcaccctttcccctttcccccttttccctttttcccccttccc
ccttaccccttccccttt

gaattcactatatggatttgggtaggtcatgatcagtatataattctgcc
atgaatccaggctgaagttaggctttccagtggattttggaacaatggat
gcctcttctaacccatgttttgtaagtctcagaaactagaaacttccctg
tgaagtttttggtggattagtgaagtactgagataattatggttgctttg
aattaactaggattgatttgtgctgtgtaaaaacacacttatttactgaa
ggttatggagaaactgaaaaatgacttttctctggtttagcccatgaact
gagataatatttggtacctgaacaccatgtaaagtgcctggacacccaga
gcactaagacatacataacaaagaaattcaggtttgctaaacaaaatcaa
ttttttgagaagctccagggacctcagaatcagtacaaagctacagagaa
gacagaagaacttccagtagtgaagcagagagaagaaggactaagaaaaa
gtgctcagattacaatccctatgaatgcaaacactaagaatgtctgccct
tactcttgcatcaatggcagtaaccagaacctttcctgaagagtccggca
atggaaaggaagatactgacatttgtctttgtgttcgatgagttttctgt
gatgtgtccttaattggccaccatgcacaatggagcccgaaatgactatt
cactgcagtacaccgacatgtgagaggtggaacaggaacaatgtgacagc
gctcattctgttggcccattaaaaaacatccagtcgaacagctgttgctg
attttccaataattaccagttatgtttcagactcaatgaaaattacccag
gaggcccaggaaaggaaaggtcaaccctgcctgtgatagttggataggtt
tggtagcagattgtagatgtgtaaagacccttgggaagatgcctagggtc
tgaatcagcaggcagttgaaacagcagatgcaggggagggtagcatgctg
cgtgacgtggacaagaagattgatgatgtagaggagagaagcagagtgga
gatgcaaccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_43536803_43537420
seq2: B6Ng01-309C03.b_45_662 (reverse)

seq1  AAAGGGGAAGGGGGAAGGGGGAAGGGGGAAAAAGGGAAAAGGGGGAAAGG  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAAGGGGTAAGGGGGAAGGGGGAAAAAGGGAAAAGGGGGAAAGG  50

seq1  GGAAAGGGTGAAAAGGGGAAAAGGGGAAAAGGGGAAAAGGGGAAAAGGGG  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAAAGGGTGAAAAGGGGAAAAGGGGTAAAGGGGAAAAGGGGAAAAGGGG  100

seq1  GGAAAGAGGAAAAGGGGAAAGGGGGAAAGGGGGGGGAAAGAGGAAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGGAAAAGGGGAAAGGGGGAAAGGGGGGGGAAAGAGGAAAAGGG  150

seq1  GAAAGGGGGAAAAGGGGAAAAGGGGAAAAAAGGGAAAAGGGCAAGTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGGAAAAGGGGAAAAGGGGAAAAAAGGGAAAAGGGCAAGTCACA  200

seq1  ATAACAATAACTGAAAAAAAGTTACCATGAAAAGTTATACTGAATAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATAACTGAAAAAAAGTTACCATGAAAAGTTATACTGAATAGATA  250

seq1  TTTGAACCTACAATGAGAATATAGTAATCTCTAAATAGAAGGGGCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCTACAATGAGAATATAGTAATCTCTAAATAGAAGGGGCCATCA  300

seq1  TGAGAACCTGATTTTTTTGGCAGACTGATATTAGACTGTCTGCTTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCTGATTTTTTTGGCAGACTGATATTAGACTGTCTGCTTGAAGA  350

seq1  AGTGTGAGCAATCAGTGTCTGCTTTGTAGAAGCTACCCAGTCTGTAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGCAATCAGTGTCTGCTTTGTAGAAGCTACCCAGTCTGTAGTTA  400

seq1  TTTTCTCACAACCACAAAGTAAAAAAATAGCTTCCTATTATGAATCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCACAACCACAAAGTAAAAAAATAGCTTCCTATTATGAATCAGAA  450

seq1  TCTATTTTTTTATCTGAAGATCGTAGTTTTTCATCACCAGAAGATTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTTATCTGAAGATCGTAGTTTTTCATCACCAGAAGATTATGT  500

seq1  ATAGTTCCTGTCAAATAGGGTACAGTGAACTGGCAAGGTATCTGCTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCCTGTCAAATAGGGTACAGTGAACTGGCAAGGTATCTGCTTGAG  550

seq1  TCCAGTACAAAAAAAAATCTATAAACAACCCCATTAAAAAATGGGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACAAAAAAAAATCTATAAACAACCCCATTAAAAAATGGGGCTCA  600

seq1  GAACTGAACAAAGAATTC  618
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  618


seq1: chr8_43378316_43379385
seq2: B6Ng01-309C03.g_67_1129

seq1  GAATTCACTATATGGATTTGGGTAGGTCATGATCAGTATATAATTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATATGGATTTGGGTAGGTCATGATCAGTATATAATTCTGCC  50

seq1  ATGAATCCAGGCTGAAGTTAGGCTTTCCAGTGGATTTTGGAACAATGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCAGGCTGAAGTTAGGCTTTCCAGTGGATTTTGGAACAATGGAT  100

seq1  GCCTCTTCTAACCCATGTTTTGTAAGTCTCAGAAACTAGAAACTTCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTCTAACCCATGTTTTGTAAGTCTCAGAAACTAGAAACTTCCCTG  150

seq1  TGAAGTTTTTGGTGGATTAGTGAAGTACTGAGATAATTATGGTTGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTTTGGTGGATTAGTGAAGTACTGAGATAATTATGGTTGCTTTG  200

seq1  AATTAACTAGGATTGATTTGTGCTGTGTAAAAACACACTTATTTACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTAGGATTGATTTGTGCTGTGTAAAAACACACTTATTTACTGAA  250

seq1  GGTTATGGAGAAACTGAAAAATGACTTTTCTCTGGTTTAGCCCATGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGGAGAAACTGAAAAATGACTTTTCTCTGGTTTAGCCCATGAACT  300

seq1  GAGATAATATTTGGTACCTGAACACCATGTAAAGTGCCTGGACACCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATATTTGGTACCTGAACACCATGTAAAGTGCCTGGACACCCAGA  350

seq1  GCACTAAGACATACATAACAAAGAAATTCAGGTTTGCTAAACAAAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAGACATACATAACAAAGAAATTCAGGTTTGCTAAACAAAATCAA  400

seq1  TTTTTTGAGAAGCTCCAGGGACCTCAGAATCAGTACAAAGCTACAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGAAGCTCCAGGGACCTCAGAATCAGTACAAAGCTACAGAGAA  450

seq1  GACAGAAGAACTTCCAGTAGTGAAGCAGAGAGAAGAAGGACTAAGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGAACTTCCAGTAGTGAAGCAGAGAGAAGAAGGACTAAGAAAAA  500

seq1  GTGCTCAGATTACAATCCCTATGAATGCAAACACTAAGAATGTCTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGATTACAATCCCTATGAATGCAAACACTAAGAATGTCTGCCCT  550

seq1  TACTCTTGCATCAATGGCAGTAACCAGAACCTTTCCTGAAGAGTCCGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGCATCAATGGCAGTAACCAGAACCTTTCCTGAAGAGTCCGGCA  600

seq1  ATGGAAAGGAAGATACTGACATTTGTCTTTGTGTTCGATGAGTTTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGAAGATACTGACATTTGTCTTTGTGTTCGATGAGTTTTCTGT  650

seq1  GATGTGTCCTTAATTGGCCACCATGCACAATGGAGCCCGAAATGACTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCCTTAATTGGCCACCATGCACAATGGAGCCCGAAATGACTATT  700

seq1  CACTGCAGTACACCGACATGTGAGAGGTGGAACAGGAACAATGTGACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGTACACCGACATGTGAGAGGTGGAACAGGAACAATGTGACAGC  750

seq1  GCTCATTCTGTTGGCCCATTAAAAAACATCCAGTCGAACAGCTGTTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCTGTTGGCCCATTAAAAAACATCCAGTCGAACAGCTGTTGCTG  800

seq1  ATTTTCCAATAATTACCAGTTATGTTTCAGACTCAATGAAAATTACCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAATAATTACCAGTTATGTTTCAGACTCAATGAAAATTACCCAG  850

seq1  GAGGCCCAGGAAAGGAAAGGTCAACCCTGCCTGTGATAGTTGGATAAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGGCCCAGGAAAGGAAAGGTCAACCCTGCCTGTGATAGTTGGAT-AGGT  899

seq1  TTGGTAGCAGATTGTAGATGTGTAAAGACC--TTGGAAGATGCCTAGGGT  948
      ||||||||||||||||||||||||||||||  | ||||||||||||||||
seq2  TTGGTAGCAGATTGTAGATGTGTAAAGACCCTTGGGAAGATGCCTAGGGT  949

seq1  CTGAATCAGCAGGCCAGGTGAAACAGCAGGATGCAGGGGAGGGAAGCATG  998
      ||||||||||||| ||| |||||||||| |||||||||||||| ||||| 
seq2  CTGAATCAGCAGG-CAGTTGAAACAGCA-GATGCAGGGGAGGGTAGCAT-  996

seq1  GCTGCGTGGACGTGGACAAG-AGAATGATGAATGTAGAGGAGAGAAGGCA  1047
      ||||||| |||||||||||| ||| ||||| ||||||||||||||| |||
seq2  GCTGCGT-GACGTGGACAAGAAGATTGATG-ATGTAGAGGAGAGAA-GCA  1043

seq1  GAGTGGAGATGCAAACTCCTTCT  1070
      ||||||||||||||   ||||||
seq2  GAGTGGAGATGCAA---CCTTCT  1063


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