BAC Information

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BAC

Clone NameB6Ng01-309G19
Chromosome8 (Build37)
Map Location 88,335,792 - 88,485,107
singlet/doubletdoublet
Overlap geneItfg1, LOC100040798, Phkb
Upstream geneDand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2
Downstream geneLOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309G19.bB6Ng01-309G19.g
ACCGA101669GA101670
length1,1041,130
definitionB6Ng01-309G19.b B6Ng01-309G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,335,792 - 88,336,905)(88,483,979 - 88,485,107)
sequence
gaattctcacgagagatttcctgtgctcatggattggcagaattaacata
gtaaaaatggccatcctaccaaaaacaatctacaaactcagagcagtccc
catcaaccccaagacagttcttcaaagacacggaaacagcaattctcaaa
gtcatctagaaaaggaaagaacccagaacagccaaaacaattcttaacaa
tcaaagaacttccagcgcaattacaaacatttcttgaccatttgtagttt
ttcactggggaaataacttttcaaatcatctgctgatatttaaattgtac
ttttattgctttattattgattcatatgcgttctttggatattagctatc
ttttagtctgtctcccagtctcagggctgtttttcagtttcctgatggtg
atctcagaaaaccagttttgggtgttgatacagcccgctccttctctttt
cattttagtacctattcttttagtactacaaggtcataacggttttcctg
ctgtcgtctaaaagacatttcgtgttagctcatagtggcctagcaagcaa
tgttttttcccacacagtggtttaaaggacaatgatttcctggagcctga
gaatggatctgtcatctgtctatgtgcacactatgtgcataatattaagt
gtacccaaagcttaaactacaatattcctacaaggaaatgcaagggaaac
aataacggctttggatatggtaattaaaaaaaagttgttttttttttttt
tttttttttttttctttttttcctgagacagagtctcaatatgtatccaa
ggctggcatagaaaccacagacatctacctgtctttgcctcctcagtgca
gggattaaaaatatgtgacatcatacccttggcaaagaatttataaatct
tgtctcccttgtccccacatgacacacacagcaaatgaacggtgctggag
agttagctgagtggtttggaagagttactctgcagaaggctgggctttga
ttccagaacccatctgcagtcatattcaagccatactatagggatccata
cctattctgaactcctcaagcctaggcatgcatgtggataacttacatat
attc
gaattcatgcttagtgttataaacctggtcaaaagcccatgactgggggc
ttccttcaggaatcctgtgtgctggaggaatggcagacatgaaactgtga
gcagtgtaagagcagaggttgaggtcaagaggcacaccccccccacacac
acaaggtgtttacagttaaagaaaagataccacatagccaacatttgaaa
ggagcacacagtaaaatttatttcttaaagacaaaagaagaaaagctatt
aggtggggacagttcctcataatagacaaataatatagacagcttggcaa
ggatgtttggaggatgggaatttgcagtttgctgatgaaacagccatgat
aagagtaacgaaagattggtcaagactgagtcacactttcggtaatcttt
ggattcagcttttatagggggttagacatgaaaatgtaaaaatatgtact
tgtatccaatgacaaatactgcaaccataggactgagtcctgaagatctt
ctcttatgtgtgatggtgactggatatgatcctataagactagacattaa
ttaaaaactgattttggagctggacatagtggcacacacctttaactcag
tactagaagcagaggcaagcaggatctttgagttcaacattagcctagtc
tataatagtgaattctaggctagccagggctacacagagaaattccatct
aaaaagcaacaaactctacttgtacttgacacaatataatcattatgaga
gctggtgttttgttggttttattatttgaagagaccatgactcgagagaa
cctactactaagcttatcttggtaaatggacatgctgccaatgccctctt
catagtgtttatatgtacacccatagattagtgttgcttccaaccttagt
cagcaaagctgctttctatagtggacagtggttaaacagtgacctataac
cagtcaaagagtgactcagtcataaaagagacattctctatcactctctc
acctgcctgccgcttcagtgctcaggtatattgtacaagcggacaggaaa
gagttgggagatgcaaggagtatttcacatgtccatttggccattgccac
ttcaagaatgcacaataagcctgtggatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88335792_88336905
seq2: B6Ng01-309G19.b_47_1150

seq1  GAATTCTCACGAGAGATTTCCTGTGCTCATGGATTGGCAGAATTAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACGAGAGATTTCCTGTGCTCATGGATTGGCAGAATTAACATA  50

seq1  GTAAAAATGGCCATCCTACCAAAAACAATCTACAAACTCAGAGCAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATGGCCATCCTACCAAAAACAATCTACAAACTCAGAGCAGTCCC  100

seq1  CATCAACCCCAAGACAGTTCTTCAAAGACACGGAAACAGCAATTCTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACCCCAAGACAGTTCTTCAAAGACACGGAAACAGCAATTCTCAAA  150

seq1  GTCATCTAGAAAAGGAAAGAACCCAGAACAGCCAAAACAATTCTTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTAGAAAAGGAAAGAACCCAGAACAGCCAAAACAATTCTTAACAA  200

seq1  TCAAAGAACTTCCAGCGCAATTACAAACATTTCTTGACCATTTGTAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACTTCCAGCGCAATTACAAACATTTCTTGACCATTTGTAGTTT  250

seq1  TTCACTGGGGAAATAACTTTTCAAATCATCTGCTGATATTTAAATTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGGGAAATAACTTTTCAAATCATCTGCTGATATTTAAATTGTAC  300

seq1  TTTTATTGCTTTATTATTGATTCATATGCGTTCTTTGGATATTAGCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGCTTTATTATTGATTCATATGCGTTCTTTGGATATTAGCTATC  350

seq1  TTTTAGTCTGTCTCCCAGTCTCAGGGCTGTTTTTCAGTTTCCTGATGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCTGTCTCCCAGTCTCAGGGCTGTTTTTCAGTTTCCTGATGGTG  400

seq1  ATCTCAGAAAACCAGTTTTGGGTGTTGATACAGCCCGCTCCTTCTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAAAACCAGTTTTGGGTGTTGATACAGCCCGCTCCTTCTCTTTT  450

seq1  CATTTTAGTACCTATTCTTTTAGTACTACAAGGTCATAACGGTTTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGTACCTATTCTTTTAGTACTACAAGGTCATAACGGTTTTCCTG  500

seq1  CTGTCGTCTAAAAGACATTTCGTGTTAGCTCATAGTGGCCTAGCAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGTCTAAAAGACATTTCGTGTTAGCTCATAGTGGCCTAGCAAGCAA  550

seq1  TGTTTTTTCCCACACAGTGGTTTAAAGGACAATGATTTCCTGGAGCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCCCACACAGTGGTTTAAAGGACAATGATTTCCTGGAGCCTGA  600

seq1  GAATGGATCTGTCATCTGTCTATGTGCACACTATGTGCATAATATTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATCTGTCATCTGTCTATGTGCACACTATGTGCATAATATTAAGT  650

seq1  GTACCCAAAGCTTAAACTACAATATTCCTACAAGGAAATGCAAGGGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAAAGCTTAAACTACAATATTCCTACAAGGAAATGCAAGGGAAAC  700

seq1  AATAACGGCTTTGGATATGGTAATTAAAAAAAAGTTGTTTTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATAACGGCTTTGGATATGGTAATTAAAAAAAAGTTG-TTTTTTTTTTTT  749

seq1  TTTTTTTTTTTTTTCTTTTTTTCCTGAGACAGAGTCTCAATATGTATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTCTTTTTTTCCTGAGACAGAGTCTCAATATGTATCCA  799

seq1  AGGCTGGCATAGAAACCACAGACATCTACCTGTCTTTGCCTCCTCAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCATAGAAACCACAGACATCTACCTGTCTTTGCCTCCTCAGTGC  849

seq1  AGGGATTAAAAATATGTGACATCATACCCTTGGCAAAGAATTTATAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTAAAAATATGTGACATCATACCCTTGGCAAAGAATTTATAAATC  899

seq1  TTGTCTCCCTTGTCCCCACATGACACACACAGCAAATGAACGGGTGCTGG  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTCTCCCTTGTCCCCACATGACACACACAGCAAATGAAC-GGTGCTGG  948

seq1  AGAGTTAGCTGAGTGGTTTGGAAGAGTTACTCTTGCAGAGGGCTGGGCTT  1000
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  AGAGTTAGCTGAGTGGTTTGGAAGAGTTACTC-TGCAGAAGGCTGGGCTT  997

seq1  TGATTCCCAGAACCCATCTGGCAGTTCATA-TCAAGCCATAACTATAGGG  1049
      ||||| ||||||||||||| |||| ||||| ||||||||| |||||| ||
seq2  TGATT-CCAGAACCCATCT-GCAG-TCATATTCAAGCCAT-ACTATA-GG  1042

seq1  GATTCAATTACCTATTCTGAACTCCTCAAGCACTAGGCATGCATGT-GAT  1098
      ||| ||  ||||||||||||||||||||||| |||||||||||||| |||
seq2  GATCCA--TACCTATTCTGAACTCCTCAAGC-CTAGGCATGCATGTGGAT  1089

seq1  ACACTAACATATATTC  1114
      | ||| ||||||||||
seq2  A-ACTTACATATATTC  1104

seq1: chr8_88483979_88485107
seq2: B6Ng01-309G19.g_65_1194 (reverse)

seq1  GTATCCACA-GCTTA-TGTGCATTCCTG-AGT-GCAATGGCCCAAATGAC  46
      ||||||||| ||||| ||||||||| || ||| ||||||||| ||  |||
seq2  GTATCCACAGGCTTATTGTGCATTCTTGAAGTGGCAATGGCCAAATGGAC  50

seq1  ATGTGAAATACTCCTCGCCATCCTCCCACTCTTT-CTGTCCCGCTTTGTA  95
      ||||||||||||||| | ||||  || ||||||| |||| |||| |||||
seq2  ATGTGAAATACTCCTTG-CATCTCCCAACTCTTTCCTGT-CCGC-TTGTA  97

seq1  C-ATATACCCTGAGCACTGAGGCGGCAGGCAGGTGAGAGAGTGATAGAG-  143
      | ||||| |||||||||||| |||||||||||||||||||||||||||| 
seq2  CAATATA-CCTGAGCACTGAAGCGGCAGGCAGGTGAGAGAGTGATAGAGA  146

seq1  ATGTCTCTTTTATGACTGAGTCACTTCTTTTGACTGGTTATAGGTCACTG  193
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  ATGTCTCTTTTATGACTGAGTCACT--CTTTGACTGGTTATAGGTCACTG  194

seq1  TTTAACCACTGTCCACTATAGAAAGCAGCTTTGCTGACTAAGGTTGGAAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCACTGTCCACTATAGAAAGCAGCTTTGCTGACTAAGGTTGGAAG  244

seq1  CAACACTAATCTATGGGTGTACATATAAACACTATGAAGAGGGCATTGGC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAATCTATGGGTGTACATATAAACACTATGAAGAGGGCATTGGC  294

seq1  AGCATGTCCATTTACCAAGATAAGCTTAGTAGTAGGTTCTCTCGAGTCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCCATTTACCAAGATAAGCTTAGTAGTAGGTTCTCTCGAGTCAT  344

seq1  GGTCTCTTCAAATAATAAAACCAACAAAACACCAGCTCTCATAATGATTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTCAAATAATAAAACCAACAAAACACCAGCTCTCATAATGATTA  394

seq1  TATTGTGTCAAGTACAAGTAGAGTTTGTTGCTTTTTAGATGGAATTTCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTCAAGTACAAGTAGAGTTTGTTGCTTTTTAGATGGAATTTCTC  444

seq1  TGTGTAGCCCTGGCTAGCCTAGAATTCACTATTATAGACTAGGCTAATGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTAGCCTAGAATTCACTATTATAGACTAGGCTAATGT  494

seq1  TGAACTCAAAGATCCTGCTTGCCTCTGCTTCTAGTACTGAGTTAAAGGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAAAGATCCTGCTTGCCTCTGCTTCTAGTACTGAGTTAAAGGTG  544

seq1  TGTGCCACTATGTCCAGCTCCAAAATCAGTTTTTAATTAATGTCTAGTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACTATGTCCAGCTCCAAAATCAGTTTTTAATTAATGTCTAGTCT  594

seq1  TATAGGATCATATCCAGTCACCATCACACATAAGAGAAGATCTTCAGGAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATCATATCCAGTCACCATCACACATAAGAGAAGATCTTCAGGAC  644

seq1  TCAGTCCTATGGTTGCAGTATTTGTCATTGGATACAAGTACATATTTTTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTATGGTTGCAGTATTTGTCATTGGATACAAGTACATATTTTTA  694

seq1  CATTTTCATGTCTAACCCCCTATAAAAGCTGAATCCAAAGATTACCGAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATGTCTAACCCCCTATAAAAGCTGAATCCAAAGATTACCGAAA  744

seq1  GTGTGACTCAGTCTTGACCAATCTTTCGTTACTCTTATCATGGCTGTTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTCAGTCTTGACCAATCTTTCGTTACTCTTATCATGGCTGTTTC  794

seq1  ATCAGCAAACTGCAAATTCCCATCCTCCAAACATCCTTGCCAAGCTGTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAAACTGCAAATTCCCATCCTCCAAACATCCTTGCCAAGCTGTCT  844

seq1  ATATTATTTGTCTATTATGAGGAACTGTCCCCACCTAATAGCTTTTCTTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTGTCTATTATGAGGAACTGTCCCCACCTAATAGCTTTTCTTC  894

seq1  TTTTGTCTTTAAGAAATAAATTTTACTGTGTGCTCCTTTCAAATGTTGGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTTAAGAAATAAATTTTACTGTGTGCTCCTTTCAAATGTTGGC  944

seq1  TATGTGGTATCTTTTCTTTAACTGTAAACACCTTGTGTGTGTGGGGGGGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTATCTTTTCTTTAACTGTAAACACCTTGTGTGTGTGGGGGGGG  994

seq1  TGTGCCTCTTGACCTCAACCTCTGCTCTTACACTGCTCACAGTTTCATGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCTTGACCTCAACCTCTGCTCTTACACTGCTCACAGTTTCATGT  1044

seq1  CTGCCATTCCTCCAGCACACAGGATTCCTGAAGGAAGCCCCCAGTCATGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTCCTCCAGCACACAGGATTCCTGAAGGAAGCCCCCAGTCATGG  1094

seq1  GCTTTTGACCAGGTTTATAACACTAAGCATGAATTC  1129
      ||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGACCAGGTTTATAACACTAAGCATGAATTC  1130