BAC Information

Click to search

BAC

Clone NameB6Ng01-310C15
Chromosome8 (Build37)
Map Location 39,931,706 - 39,932,894
singlet/doubletsinglet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310C15.bB6Ng01-310C15.g
ACCGA102216GA102217
length1,2121,195
definitionB6Ng01-310C15.b B6Ng01-310C15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagtgctttatatatattggatattaatccc
ctatctgatttaggataggtaaagatcctttcccaatgtgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttattgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagggtctctggttttatgtggagttcttaat
ccacttagatttaaccttagtacaaggagatagaaatggatcaattcaca
ttcttctacatgataactgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatctctgggtcttcaattctgttccattggt
ctacttgtctgtcactataccagtaccatgcagttttgatcacagttgct
ctgtagtacagttttaggtctggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctcggttttttgttattccagatga
atctgccgattgccctttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagtcatttt
tacaatgttgatcctgccaatccatgagcatgggacatctttccatcttc
tgagatcttctttaatttctttctttagagacttgaagttcttatcatat
agatctttcacttccttagttagagtcacgccaaggtattttatatgatt
tgtgactattgagaaggtgttgtttccctaatttcttttctcagcctgtt
tatcctttgtataacagaaaggcccattgactggtgagagtaatttatta
ttccagctactttccactgaagctgtttatcagcttagggagttcctctg
gtgattttagggtcacgtataataactatcaatccattgcaaagggaatt
tggactctgcattccaattgaatcccattgatccctttgttgctaaatgc
cctgggcaaaga

gaattcctgttggcttctggaggggcccttgagataacaggcataaagaa
gaatagaggttaatcaataggaacacagcaagagtcaaaatgtagaatac
taacatgtgggacaaaatctttcttcaatgtcttgaaggtaactcatggt
gggaaaattgaggtatgtatagtaaacaacacatttacttcattgtggtc
agccattctgatagataaatagggatgtctggtttcctgtttgttttgtt
tttacattacagcaaataaactctctctgtctctgtctctgtctgtctgt
ctgtctgtctgtctgtctctctctctctctctctctctctctgtgtctat
aaatgaaactgaggcactttcatagaagcaattaaaaacattttcagctt
tgattcactcctttccaatattttagttttacatccgacacttcagtact
gtataaaaatagtaagccaatttcttaactgaaaatataatttaaaggct
aaatatgcttaaattatatttagaataaatcgaaattagcctcatattgt
aagttttttaaaatgcttacaaattatgaagatagtttgatttaatgtca
ctaagtgactttttaaggtaggccaattatttttaatactaatatgaaat
ttagtgttagaaaaaattatatttggtgttaatatttttctgcatgttta
catatgaagggaaactagatctttgaaacagcaagcaacttctgaattaa
taataccatttccaagaaatcatatagtcatttcagctttgggtttatct
gaaataactctgagaactttggactcagaattgaagaagattataatatt
ctcacagatctcctttgaattatgtaaagtgtagtttgaaccaatatatg
gaaagcaagattaaaacctttctactttataagggaccaagttaataaga
cttcatcaatcccttagatgaccaatggtgagtcaagagcctttagacat
cattcatttctctgctgatgctctgtccttgtaaagaaaaactatttcta
agtacaggaagccactggagaaacaacattgaatacttttgttcttcctc
atcgtatcaacaaataacccagagagaacaaagtaaagtggattcagatc
tattcgttaaaaaagctaaacaaaaaaaacctctctttctcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39931706_39932894
seq2: B6Ng01-310C15.g_66_1260 (reverse)

seq1  CACTGA-----AGAGGTTTTTTTTTGTTTTTTGTTTTTTTTTAAGGATAG  45
      ||||||     |||||||||||    || |||   |||||| | | ||||
seq2  CACTGAGAAAGAGAGGTTTTTT----TTGTTTAGCTTTTTTAACGAATAG  46

seq1  ATCTTGAAATCAAACTTACTTTG---TCTCTTGGTTATTGTTTGGATACG  92
      ||||   |||| |  ||||||||   ||||| ||||||| | | ||||||
seq2  ATCT--GAATCCACTTTACTTTGTTCTCTCTGGGTTATT-TGTTGATACG  93

seq1  ATGAG--AGAACAAAAGTATTCAATGTTG-TTCTCCAGTGGCTTCCTGTA  139
      |||||  |||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGAGGAAGAACAAAAGTATTCAATGTTGTTTCTCCAGTGGCTTCCTGTA  143

seq1  CTTAGAAATAG-TTTTCTTTACAAGGACAGAGCATCAGCAGGAGAAATGA  188
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  CTTAGAAATAGTTTTTCTTTACAAGGACAGAGCATCAGCA-GAGAAATGA  192

seq1  ATGATGTCTAAAGGCTCTTGACTCACCATTGGTCATCTAA-GGATTGATG  237
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGATGTCTAAAGGCTCTTGACTCACCATTGGTCATCTAAGGGATTGATG  242

seq1  AAGTCTTATTAACTTGGT-CCTTATAAAGTAGAAAGGTTTTAATCTTGCT  286
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTCTTATTAACTTGGTCCCTTATAAAGTAGAAAGGTTTTAATCTTGCT  292

seq1  TTCCATATATTGGTTCAAACTACACTTTACATAATTC-AAGGAGATCTGT  335
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCCATATATTGGTTCAAACTACACTTTACATAATTCAAAGGAGATCTGT  342

seq1  GAGAATATTATAATCTTCTTCAATTCCTGAGTCCAAAGTTCTCAGAGTTA  385
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGAATATTATAATCTTCTTCAATT-CTGAGTCCAAAGTTCTCAGAGTTA  391

seq1  TTTCAGATAAACCCAAAGCTGAAATGACTATATGATTTCTTGGAAATGGT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATAAACCCAAAGCTGAAATGACTATATGATTTCTTGGAAATGGT  441

seq1  ATTATTAATTCAGAAGTTGCTTGCTGTTTCAAAGATCTAGTTTCCCTTCA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAATTCAGAAGTTGCTTGCTGTTTCAAAGATCTAGTTTCCCTTCA  491

seq1  TATGTAAACATGCAGAAAAATATTAACACCAAATATAATTTTTTCTAACA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAACATGCAGAAAAATATTAACACCAAATATAATTTTTTCTAACA  541

seq1  CTAAATTTCATATTAGTATTAAAAATAATTGGCCTACCTTAAAAAGTCAC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTCATATTAGTATTAAAAATAATTGGCCTACCTTAAAAAGTCAC  591

seq1  TTAGTGACATTAAATCAAACTATCTTCATAATTTGTAAGCATTTTAAAAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGACATTAAATCAAACTATCTTCATAATTTGTAAGCATTTTAAAAA  641

seq1  ACTTACAATATGAGGCTAATTTCGATTTATTCTAAATATAATTTAAGCAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAATATGAGGCTAATTTCGATTTATTCTAAATATAATTTAAGCAT  691

seq1  ATTTAGCCTTTAAATTATATTTTCAGTTAAGAAATTGGCTTACTATTTTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCTTTAAATTATATTTTCAGTTAAGAAATTGGCTTACTATTTTT  741

seq1  ATACAGTACTGAAGTGTCGGATGTAAAACTAAAATATTGGAAAGGAGTGA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTACTGAAGTGTCGGATGTAAAACTAAAATATTGGAAAGGAGTGA  791

seq1  ATCAAAGCTGAAAATGTTTTTAATTGCTTCTATGAAAGTGCCTCAGTTTC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCTGAAAATGTTTTTAATTGCTTCTATGAAAGTGCCTCAGTTTC  841

seq1  ATTTATAGACACAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGACACAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAG  891

seq1  ACAGACAGACAGACAGAGACAGAGACAGAGAGAGTTTATTTGCTGTAATG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGACAGAGACAGAGACAGAGAGAGTTTATTTGCTGTAATG  941

seq1  TAAAAACAAAACAAACAGGAAACCAGACATCCCTATTTATCTATCAGAAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAACAAACAGGAAACCAGACATCCCTATTTATCTATCAGAAT  991

seq1  GGCTGACCACAATGAAGTAAATGTGTTGTTTACTATACATACCTCAATTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCACAATGAAGTAAATGTGTTGTTTACTATACATACCTCAATTT  1041

seq1  TCCCACCATGAGTTACCTTCAAGACATTGAAGAAAGATTTTGTCCCACAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCATGAGTTACCTTCAAGACATTGAAGAAAGATTTTGTCCCACAT  1091

seq1  GTTAGTATTCTACATTTTGACTCTTGCTGTGTTCCTATTGATTAACCTCT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTATTCTACATTTTGACTCTTGCTGTGTTCCTATTGATTAACCTCT  1141

seq1  ATTCTTCTTTATGCCTGTTATCTCAAGGGCCCCTCCAGAAGCCAACAGGA  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTTATGCCTGTTATCTCAAGGGCCCCTCCAGAAGCCAACAGGA  1191

seq1  ATTC  1189
      ||||
seq2  ATTC  1195


| Home | SequenceCutter | Blast | Download |