BAC Information

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BAC

Clone NameB6Ng01-311B09
Chromosome8 (Build37)
Map Location 112,813,499 - 112,992,322
singlet/doubletdoublet
Overlap geneHydin, LOC672398
Upstream geneGm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546
Downstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311B09.bB6Ng01-311B09.g
ACCGA102891GA102892
length977939
definitionB6Ng01-311B09.b B6Ng01-311B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,813,499 - 112,814,326)(112,991,387 - 112,992,322)
sequence
gaattcactcacttttagcgtgagttgtacagcaccatgggatgtggtcc
tggtctgaaggagaaaaagcaggtagatacccaaaggccctctctgattt
ctcagctgccaacacgatgtaaatgtaagcatctatcttgcaggcacagc
tatctgcccccaccaccatgtcttcccaatcatgatagactgcatccctt
tagaccatgaaccaaaataaggctgccttcctataaggtgtttcttatca
ggttttggtaacagcaacaacacgaataaatgacaaaagaaacgcatata
aaaaagttgctgtgataaacctgaccacctctgatgccaccactggcctc
agataccagatgcagagcagggtttggagtttgctctgtggcgtttggtt
tttttccccgctgggtccagctttcccttgctattgccctaatgctcctt
ggttctcaggcttttggaacaggttttaagaggtgtgtggagagtctgga
gctgtaggctagagaagccccagaatgccagagtggagatcaataggcca
ttggggaggagttgagaagaccagaattctgagagcaacgtggaccatgc
tggcctggctcgtggagtttcagaggggaacgaagatttattagaaaatg
tgcttgagagatttatgtaacgtcctggcataagatatttggcattgctc
tgcccacgccatgagatctttcatgaggctgaattcagaaggaatagatt
gcgttgtttagtggagatttccagacagtggaatatccagaccatgatgt
ggttactcatcactgctcatagtcagacctacagcggcccagcagaaaga
tatcaaaaaatacgctgttcagtgagaaagggtgcacgcgtgagtataag
gtttgtaaataaggtaggtgtaggagagacagcctgtcatttttaaagaa
gatagtgaccattaaagagaactttgg
gaattctaactggaaaggaaaggttagtgttgatatgtctgataaaatga
cctttaaccagggtttttctctttttctgatggcacacacagagactttc
tggagggcaggtggcatttttggttctgttatatgtgacatttatgccat
gagcttgtttatttgatgggtgccaggaaactgacagaagagatccttaa
acaagttatgaaaaaaccgtcttcctcttgccacaataaccaggagggga
tgttgactagctcagggtactgccaggctttggggctccagagataccag
ggaggatgcactggccagcctcatggggattcagagccgactggaaggat
ggatgctgagctttaagtacaggtgtgacatacaccaagaaagtcaaggt
accagggctcataggataggctctggccagggcaggagcctcagaggaga
ctcttctgaggaagaacaccgaacctaagactagaggattgactaggagg
aagctaggagagagtggggaagagctttcggcagagaggagacagtgaca
cagaacagctctggatgaggcaggagccagtagtgaaggaggcagaagat
gttcttgtgctgtatattgagaggaagccagctaggaagaatgcagggac
caggctgggccaaggatcactgaatcaccccaggtatcttgcactcaatt
ctgaagagcagaggtagtctgaatcattacggacgtaagccaggggagac
acatgcacgctctttactaggaccctgagcagaaatgagactgtggtgca
cgtgtggaagcagaggacacaggaagggctgtcacaccacccacatcaca
gggtgatgggtgaataaaatagagcagtggagacaaggaagaggcttttt
ataaggtacagcaggtgggttggatgcagtggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112813499_112814326
seq2: B6Ng01-311B09.b_45_872

seq1  GAATTCACTCACTTTTAGCGTGAGTTGTACAGCACCATGGGATGTGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCACTTTTAGCGTGAGTTGTACAGCACCATGGGATGTGGTCC  50

seq1  TGGTCTGAAGGAGAAAAAGCAGGTAGATACCCAAAGGCCCTCTCTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGAAGGAGAAAAAGCAGGTAGATACCCAAAGGCCCTCTCTGATTT  100

seq1  CTCAGCTGCCAACACGATGTAAATGTAAGCATCTATCTTGCAGGCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGCCAACACGATGTAAATGTAAGCATCTATCTTGCAGGCACAGC  150

seq1  TATCTGCCCCCACCACCATGTCTTCCCAATCATGATAGACTGCATCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCCCCACCACCATGTCTTCCCAATCATGATAGACTGCATCCCTT  200

seq1  TAGACCATGAACCAAAATAAGGCTGCCTTCCTATAAGGTGTTTCTTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCATGAACCAAAATAAGGCTGCCTTCCTATAAGGTGTTTCTTATCA  250

seq1  GGTTTTGGTAACAGCAACAACACGAATAAATGACAAAAGAAACGCATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGTAACAGCAACAACACGAATAAATGACAAAAGAAACGCATATA  300

seq1  AAAAAGTTGCTGTGATAAACCTGACCACCTCTGATGCCACCACTGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTGCTGTGATAAACCTGACCACCTCTGATGCCACCACTGGCCTC  350

seq1  AGATACCAGATGCAGAGCAGGGTTTGGAGTTTGCTCTGTGGCGTTTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAGATGCAGAGCAGGGTTTGGAGTTTGCTCTGTGGCGTTTGGTT  400

seq1  TTTTTCCCCGCTGGGTCCAGCTTTCCCTTGCTATTGCCCTAATGCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCGCTGGGTCCAGCTTTCCCTTGCTATTGCCCTAATGCTCCTT  450

seq1  GGTTCTCAGGCTTTTGGAACAGGTTTTAAGAGGTGTGTGGAGAGTCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAGGCTTTTGGAACAGGTTTTAAGAGGTGTGTGGAGAGTCTGGA  500

seq1  GCTGTAGGCTAGAGAAGCCCCAGAATGCCAGAGTGGAGATCAATAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGGCTAGAGAAGCCCCAGAATGCCAGAGTGGAGATCAATAGGCCA  550

seq1  TTGGGGAGGAGTTGAGAAGACCAGAATTCTGAGAGCAACGTGGACCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGGAGTTGAGAAGACCAGAATTCTGAGAGCAACGTGGACCATGC  600

seq1  TGGCCTGGCTCGTGGAGTTTCAGAGGGGAACGAAGATTTATTAGAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGCTCGTGGAGTTTCAGAGGGGAACGAAGATTTATTAGAAAATG  650

seq1  TGCTTGAGAGATTTATGTAACGTCCTGGCATAAGATATTTGGCATTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGAGATTTATGTAACGTCCTGGCATAAGATATTTGGCATTGCTC  700

seq1  TGCCCACGCCATGAGATCTTTCATGAGGCTGAATTCAGAAGGAATAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACGCCATGAGATCTTTCATGAGGCTGAATTCAGAAGGAATAGATT  750

seq1  GCGTTGTTTAGTGGAGATTTCCAGACAGTGGAATATCCAGACCATGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGTTTAGTGGAGATTTCCAGACAGTGGAATATCCAGACCATGATGT  800

seq1  GGTTACTCATCACTGCTCATAGTCAGAC  828
      ||||||||||||||||||||||||||||
seq2  GGTTACTCATCACTGCTCATAGTCAGAC  828

seq1: chr8_112991387_112992322
seq2: B6Ng01-311B09.g_69_1007 (reverse)

seq1  CCCCA-CCCACTGCATCAAACCCACCTGCTGTACCTTAT-AAAAGCCTCT  48
      ||||| ||||||||||| ||||||||||||||||||||| ||||||||||
seq2  CCCCACCCCACTGCATCCAACCCACCTGCTGTACCTTATAAAAAGCCTCT  50

seq1  TCTTTGTCTCCACTGCTCTATTTTATTCA-CCATCA-CCTGTGATGTGGG  96
      || |||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TCCTTGTCTCCACTGCTCTATTTTATTCACCCATCACCCTGTGATGTGGG  100

seq1  TGGTTGTGACAGCCCTTCCTGTGTCCTCTGCTTCCACACGTGCACCACAG  146
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-TGTGACAGCCCTTCCTGTGTCCTCTGCTTCCACACGTGCACCACAG  149

seq1  TCTCATTTCTGCTCAGGGTCCTAGTAAAGAGCGTGCATGTGTCTCCCCTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCTGCTCAGGGTCCTAGTAAAGAGCGTGCATGTGTCTCCCCTG  199

seq1  GCTTACGTCCGTAATGATTCAGACTACCTCTGCTCTTCAGAATTGAGTGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACGTCCGTAATGATTCAGACTACCTCTGCTCTTCAGAATTGAGTGC  249

seq1  AAGATACCTGGGGTGATTCAGTGATCCTTGGCCCAGCCTGGTCCCTGCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACCTGGGGTGATTCAGTGATCCTTGGCCCAGCCTGGTCCCTGCAT  299

seq1  TCTTCCTAGCTGGCTTCCTCTCAATATACAGCACAAGAACATCTTCTGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAGCTGGCTTCCTCTCAATATACAGCACAAGAACATCTTCTGCC  349

seq1  TCCTTCACTACTGGCTCCTGCCTCATCCAGAGCTGTTCTGTGTCACTGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACTACTGGCTCCTGCCTCATCCAGAGCTGTTCTGTGTCACTGTC  399

seq1  TCCTCTCTGCCGAAAGCTCTTCCCCACTCTCTCCTAGCTTCCTCCTAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTGCCGAAAGCTCTTCCCCACTCTCTCCTAGCTTCCTCCTAGTC  449

seq1  AATCCTCTAGTCTTAGGTTCGGTGTTCTTCCTCAGAAGAGTCTCCTCTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTAGTCTTAGGTTCGGTGTTCTTCCTCAGAAGAGTCTCCTCTGA  499

seq1  GGCTCCTGCCCTGGCCAGAGCCTATCCTATGAGCCCTGGTACCTTGACTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGCCCTGGCCAGAGCCTATCCTATGAGCCCTGGTACCTTGACTT  549

seq1  TCTTGGTGTATGTCACACCTGTACTTAAAGCTCAGCATCCATCCTTCCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGTATGTCACACCTGTACTTAAAGCTCAGCATCCATCCTTCCAG  599

seq1  TCGGCTCTGAATCCCCATGAGGCTGGCCAGTGCATCCTCCCTGGTATCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTCTGAATCCCCATGAGGCTGGCCAGTGCATCCTCCCTGGTATCTC  649

seq1  TGGAGCCCCAAAGCCTGGCAGTACCCTGAGCTAGTCAACATCCCCTCCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCCAAAGCCTGGCAGTACCCTGAGCTAGTCAACATCCCCTCCTG  699

seq1  GTTATTGTGGCAAGAGGAAGACGGTTTTTTCATAACTTGTTTAAGGATCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTGGCAAGAGGAAGACGGTTTTTTCATAACTTGTTTAAGGATCT  749

seq1  CTTCTGTCAGTTTCCTGGCACCCATCAAATAAACAAGCTCATGGCATAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCAGTTTCCTGGCACCCATCAAATAAACAAGCTCATGGCATAAA  799

seq1  TGTCACATATAACAGAACCAAAAATGCCACCTGCCCTCCAGAAAGTCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATATAACAGAACCAAAAATGCCACCTGCCCTCCAGAAAGTCTCT  849

seq1  GTGTGTGCCATCAGAAAAAGAGAAAAACCCTGGTTAAAGGTCATTTTATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCCATCAGAAAAAGAGAAAAACCCTGGTTAAAGGTCATTTTATC  899

seq1  AGACATATCAACACTAACCTTTCCTTTCCAGTTAGAATTC  936
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATCAACACTAACCTTTCCTTTCCAGTTAGAATTC  939