BAC Information

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BAC

Clone NameB6Ng01-312I21
Chromosome8 (Build37)
Map Location 85,495,420 - 85,608,411
singlet/doubletdoublet
Overlap geneRnf150
Upstream geneInpp4b, LOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
Downstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312I21.bB6Ng01-312I21.g
ACCGA103995GA103996
length1,0791,161
definitionB6Ng01-312I21.b B6Ng01-312I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,607,321 - 85,608,411)(85,495,420 - 85,496,591)
sequence
gaattcatttatgaaggtgataaactgctaaggctttggaggaaatcagg
gagtcaggcatcttcctgggaagacagggtatcaggttttgttttgtttg
tttgttttttaaactaggcttatagttccacatactctgaactttgtcat
ggtgtcctttggggaattctgagttttagactaaggccctccagtcagag
gacctgcattcctccctgacagttctctcctgctaagatggcccctgaca
gagcgtggcaagtggaagcctatgtagtggagtggaaaatagccagcaag
cagctcagcagatccagaacttagtgtggctgtctggcagctgggctcgc
caaggcccacctattggaggggtttagacacttggtaaaatctgcctttc
cactgtttcagggtgccgaggcaatcctcaaagtcatacacacgtcatat
tgataactcgcgactatgaatctcaagacgtggtataaaccaatcacagg
gccagcaaccagaacttctaagcagacctctgtacatgggctggagtgga
tcaaagggaaaacggagggaatcaatcgatgtaaactacacatcaacttt
aaaaagaagtcgccaagggaatgaaaccatttttcccaaacaagagcaag
aagatgggagaggctgaagtcaagtgaagaaactgtggagttctccttcc
agtctgctgcacgtctacacagacaccaagaaattcagctttcaacttcc
acatcaaggccacagctgttgttgcagagatgggaacccgcatcctgact
cgggagactttggatattgctttcgttaccactccttgacagagtgccct
ggggttgccatggtgatctgaagtcgtgttatccagttcagtcttggagc
atgcttccctcctgtcccctggtctatgtctctcttgtcaatttctacca
tctcagaattcacctcctccgcagtctggtcagtgaaaggttctaaatca
gacagccactcagtgcataattatgagaatgtcagttcactgtctcagtg
ctggccttgaaccaccttgaaggggacaa
gaattccaggaccaccaagaatacatagagagaccctgtatcaagcaaac
aaacatgccttcacttcttgtggctcctgaacatacccaccccaaaggaa
gtctaagcttattggggtctcttcatatgactttccctagccaacttgtg
aaggactttcttgtttctctgatagatgctgaaggctgaggaatagcaca
ggaatacacactggagatttaagggaggaaattcaggagggcccatgagt
ccacatccttcagtgagagagaatcagagaacctacagagcttcccagac
ggtatcagccacgtgccttcctccgagcaagaggcagggtcatgtgactg
cagatcttccggagggatgtggatgactttaagacttttagttcttgaaa
gattgaattggaatttgaactaacgaccagattattgatttgatttaagt
ctctctgaattttgaataatgattctgtagttataccaggaagagaacaa
gtgtgtgttttactgttctctgtatttatagttagtattatttctacata
agttattcttcttctcaaatttcagtaaggatatatttgttcagatttaa
aaaaaaaatctgttacccaacaaccaaagacttaactatcctttgcctta
gtcagaatcatattaaaggttgaagtcctgatatgccacagtgtatgttt
ttagaaaggaaatgaacttttatggttttaatttgttagccttgttttga
gtttttagaaattactatttgtgaaatattttctcaaatgaaagttgtca
gtgagataaagaaaaatagaattttgttgtatttcaggacttcacaatag
tgaaggcagtggtcattacaagaacgagcagacggaaacaattagtatca
gacaataaacactctgcctggtcctggaagtcgacttgcagaaagccttc
agttgaagagagaaagactttggctcccaggtctgaccagggtggatgta
tagtgaatgggactgcattgcaagctctacgcacagcgcatgagcggttt
ttcttttctttttcttttgtaagattattattattattattaatttatta
atgtatgtgagtacctgtcactgtcttccggacacaccagaaaaggccac
tcacatgttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_85607321_85608411
seq2: B6Ng01-312I21.b_46_1124 (reverse)

seq1  TTGTCCCCCTTCAGGTGG-TCAAGAGCCAGCACTGAG-CAGTGACTCTGA  48
      |||||||| |  |||||| ||||| |||||||||||| ||||||  ||||
seq2  TTGTCCCCTTCAAGGTGGTTCAAG-GCCAGCACTGAGACAGTGA-ACTGA  48

seq1  CA-TCTCATTAATTATGGCACTGGAAGTGGGCCTGTCTGATGTAGAACTT  97
      || ||||| ||||||| ||||||  |||||  ||||||||| |||||| |
seq2  CATTCTCA-TAATTAT-GCACTG--AGTGG--CTGTCTGATTTAGAACCT  92

seq1  TCCACTGACCAAGACTGC-GAGGAGGTGAAATCTTGAGATGGTAGAAATG  146
      | |||||||| ||||||| ||||||||||| || ||||||||||||||| 
seq2  TTCACTGACC-AGACTGCGGAGGAGGTGAATTC-TGAGATGGTAGAAATT  140

seq1  GACAAGAGAAGACATAGGAACCAGGGGGACAGGAGGGAAGCATGCTCCAA  196
      |||||||| ||||||||  |||| ||||||||||||||||||||||||||
seq2  GACAAGAG-AGACATAG--ACCA-GGGGACAGGAGGGAAGCATGCTCCAA  186

seq1  GGACTGAACTGGAT-ACACGACCTTCAGATCACCATGGCAACCCCAGGGC  245
       ||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  -GACTGAACTGGATAACACGA-CTTCAGATCACCATGGCAACCCCAGGGC  234

seq1  ACTCTGTTCAAGG-GTGGTAACGAAAGCAATATCCAAAGTCTCCCGAGTC  294
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTCTG-TCAAGGAGTGGTAACGAAAGCAATATCCAAAGTCTCCCGAGTC  283

seq1  AGGATGCGGGTTCCCATCTCTGCAACAACAGCCTGTGGCCTTGATGTGGA  344
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGATGCGGGTTCCCATCTCTGCAACAACAG-CTGTGGCCTTGATGTGGA  332

seq1  AGTTGAAAGCTGAATTTCTTGGTGTCTGTGTAGACGTGCAGCAGACTGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAAGCTGAATTTCTTGGTGTCTGTGTAGACGTGCAGCAGACTGGA  382

seq1  AGGAGAACTCCACAGTTTCTTCACTTGACTTCAGCCTCTCCCATCTTCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACTCCACAGTTTCTTCACTTGACTTCAGCCTCTCCCATCTTCTT  432

seq1  GCTCTTGTTTGGGAAAAATGGTTTCATTCCCTTGGCGACTTCTTTTTAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTTTGGGAAAAATGGTTTCATTCCCTTGGCGACTTCTTTTTAAA  482

seq1  GTTGATGTGTAGTTTACATCGATTGATTCCCTCCGTTTTCCCTTTGATCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTGTAGTTTACATCGATTGATTCCCTCCGTTTTCCCTTTGATCC  532

seq1  ACTCCAGCCCATGTACAGAGGTCTGCTTAGAAGTTCTGGTTGCTGGCCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCCCATGTACAGAGGTCTGCTTAGAAGTTCTGGTTGCTGGCCCT  582

seq1  GTGATTGGTTTATACCACGTCTTGAGATTCATAGTCGCGAGTTATCAATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGGTTTATACCACGTCTTGAGATTCATAGTCGCGAGTTATCAATA  632

seq1  TGACGTGTGTATGACTTTGAGGATTGCCTCGGCACCCTGAAACAGTGGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTGTGTATGACTTTGAGGATTGCCTCGGCACCCTGAAACAGTGGAA  682

seq1  AGGCAGATTTTACCAAGTGTCTAAACCCCTCCAATAGGTGGGCCTTGGCG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTTACCAAGTGTCTAAACCCCTCCAATAGGTGGGCCTTGGCG  732

seq1  AGCCCAGCTGCCAGACAGCCACACTAAGTTCTGGATCTGCTGAGCTGCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCTGCCAGACAGCCACACTAAGTTCTGGATCTGCTGAGCTGCTT  782

seq1  GCTGGCTATTTTCCACTCCACTACATAGGCTTCCACTTGCCACGCTCTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTATTTTCCACTCCACTACATAGGCTTCCACTTGCCACGCTCTGT  832

seq1  CAGGGGCCATCTTAGCAGGAGAGAACTGTCAGGGAGGAATGCAGGTCCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCATCTTAGCAGGAGAGAACTGTCAGGGAGGAATGCAGGTCCTC  882

seq1  TGACTGGAGGGCCTTAGTCTAAAACTCAGAATTCCCCAAAGGACACCATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAGGGCCTTAGTCTAAAACTCAGAATTCCCCAAAGGACACCATG  932

seq1  ACAAAGTTCAGAGTATGTGGAACTATAAGCCTAGTTTAAAAAACAAACAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTCAGAGTATGTGGAACTATAAGCCTAGTTTAAAAAACAAACAA  982

seq1  ACAAAACAAAACCTGATACCCTGTCTTCCCAGGAAGATGCCTGACTCCCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACCTGATACCCTGTCTTCCCAGGAAGATGCCTGACTCCCT  1032

seq1  GATTTCCTCCAAAGCCTTAGCAGTTTATCACCTTCATAAATGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTCCAAAGCCTTAGCAGTTTATCACCTTCATAAATGAATTC  1079

seq1: chr8_85495420_85496591
seq2: B6Ng01-312I21.g_64_1224

seq1  GAATTCCAGGACCACCAAGAATACATAGAGAGACCCTGTATCAAGCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACCACCAAGAATACATAGAGAGACCCTGTATCAAGCAAAC  50

seq1  AAACATGCCTTCACTTCTTGTGGCTCCTGAACATACCCACCCCAAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCCTTCACTTCTTGTGGCTCCTGAACATACCCACCCCAAAGGAA  100

seq1  GTCTAAGCTTATTGGGGTCTCTTCATATGACTTTCCCTAGCCAACTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGCTTATTGGGGTCTCTTCATATGACTTTCCCTAGCCAACTTGTG  150

seq1  AAGGACTTTCTTGTTTCTCTGATAGATGCTGAAGGCTGAGGAATAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTTCTTGTTTCTCTGATAGATGCTGAAGGCTGAGGAATAGCACA  200

seq1  GGAATACACACTGGAGATTTAAGGGAGGAAATTCAGGAGGGCCCATGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACACACTGGAGATTTAAGGGAGGAAATTCAGGAGGGCCCATGAGT  250

seq1  CCACATCCTTCAGTGAGAGAGAATCAGAGAACCTACAGAGCTTCCCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCTTCAGTGAGAGAGAATCAGAGAACCTACAGAGCTTCCCAGAC  300

seq1  GGTATCAGCCACGTGCCTTCCTCCGAGCAAGAGGCAGGGTCATGTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAGCCACGTGCCTTCCTCCGAGCAAGAGGCAGGGTCATGTGACTG  350

seq1  CAGATCTTCCGGAGGGATGTGGATGACTTTAAGACTTTTAGTTCTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTCCGGAGGGATGTGGATGACTTTAAGACTTTTAGTTCTTGAAA  400

seq1  GATTGAATTGGAATTTGAACTAACGACCAGATTATTGATTTGATTTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATTGGAATTTGAACTAACGACCAGATTATTGATTTGATTTAAGT  450

seq1  CTCTCTGAATTTTGAATAATGATTCTGTAGTTATACCAGGAAGAGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAATTTTGAATAATGATTCTGTAGTTATACCAGGAAGAGAACAA  500

seq1  GTGTGTGTTTTACTGTTCTCTGTATTTATAGTTAGTATTATTTCTACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTTTACTGTTCTCTGTATTTATAGTTAGTATTATTTCTACATA  550

seq1  AGTTATTCTTCTTCTCAAATTTCAGTAAGGATATATTTGTTCAGATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCTTCTTCTCAAATTTCAGTAAGGATATATTTGTTCAGATTTAA  600

seq1  AAAAAAAATCTGTTACCCAACAACCAAAGACTTAACTATCCTTTGCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCTGTTACCCAACAACCAAAGACTTAACTATCCTTTGCCTTA  650

seq1  GTCAGAATCATATTAAAGGTTGAAGTCCTGATATGCCACAGTGTATGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATCATATTAAAGGTTGAAGTCCTGATATGCCACAGTGTATGTTT  700

seq1  TTAGAAAGGAAATGAACTTTTATGGTTTTAATTTGTTAGCCTTGTTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGGAAATGAACTTTTATGGTTTTAATTTGTTAGCCTTGTTTTGA  750

seq1  GTTTTTAGAAATTACTATTTGTGAAATATTTTCTCAAATGAAAGTTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGAAATTACTATTTGTGAAATATTTTCTCAAATGAAAGTTGTCA  800

seq1  GTGAGATAAAGAAAAATAGAATTTTGTTGTATTTCAGGACTTCACAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATAAAGAAAAATAGAATTTTGTTGTATTTCAGGACTTCACAATAG  850

seq1  TGAAGGCAGTGGTCATTACAAGAACGAGCAGACGGAAACAATTAGTATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGTGGTCATTACAAGAACGAGCAGACGGAAACAATTAGTATCA  900

seq1  GACAATAAACACTCTGCCTGGTCCTGGAAGTCGACTTGCAGAAAGCCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAAACACTCTGCCTGGTCCTGGAAGTCGACTTGCAGAAAGCCTTC  950

seq1  AGTTGAAGAGAGAAAGACTTTGGCTCCCAGGTCTGACCAGGGTGGATGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGAGAGAAAGACTTTGGCTCCCAGGTCTGACCAGGGTGGATGTA  1000

seq1  TAAGTGAAT-GGACTGCATTGCAAGCTCTAAGGCCACAGCGCATGAGGCG  1049
      | ||||||| |||||||||||||||||||| |  |||||||||||| |||
seq2  T-AGTGAATGGGACTGCATTGCAAGCTCTACG--CACAGCGCATGA-GCG  1046

seq1  GTTTTTCTTTTTCTTTTTTCTTTTTGTTAAGATTTATTTATTTATTTATT  1099
      |||||||||||   ||||||||||   ||||| |||||   |||||   |
seq2  GTTTTTCTTTT--CTTTTTCTTTT--GTAAGA-TTATT--ATTATT--AT  1087

seq1  TATTATTTATTTAATGTATGTGAGTACACTGTCACTGTCTT-CAGACACA  1148
      ||||| ||  ||||||||||||||||| ||||||||||||| | ||||||
seq2  TATTAATTTATTAATGTATGTGAGTAC-CTGTCACTGTCTTCCGGACACA  1136

seq1  CCAGAAAAGGGCA-TCACATGTTTA  1172
      |||||||||| || |||||||||||
seq2  CCAGAAAAGGCCACTCACATGTTTA  1161