BAC Information

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BAC

Clone NameB6Ng01-313F18
Chromosome8 (Build37)
Map Location 24,618,324 - 24,821,995
singlet/doubletdoublet
Overlap geneLOC100040931, Zmat4
Upstream geneSlc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313F18.bB6Ng01-313F18.g
ACCGA104596GA104597
length1,191617
definitionB6Ng01-313F18.b B6Ng01-313F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,618,324 - 24,619,519)(24,821,379 - 24,821,995)
sequence
gaattccaagctgagagttttgactcctggagccaaagaatcctttgttc
tgaggattacatcacagaactatttttagaggccaagtctgctttgccag
gggccgagggttactgccttccccctctgccttccaactccagaattttt
tattccccttgtccatttctcttcttcccagaattgatcgtatgaatggc
caaggataaatgaaggccttatgaaggccaccttgggtgtaggtgccacc
tctgggtggttccagagaggtgagtacagggactatatatcataagacct
tacccagtagagaacattttacagtgtctgaaacccgaggccaggactct
ggagagatggtggagtcttcctgccgcctctgtgcccagctaaaacaaga
tatatctagttcagcaaccaaggagaacaacagccagctgggaagggtct
ctgtttgcaagatggctttctacagcagcaagatctgacttagaaaggac
aggcctacgaacagagggatgtctcctctcctcagttgggtatgagcagt
tctagctttttcctgtccacttcaccctcttcgttcaatgtgggcctctg
tgtaccaaagcaggatgggacattgaggtgctaagggtgctgagaaccag
acagcataagtcactgtccctagttgttgaaactattagccaactcttct
gtctttgaatgtagcgttctttccagtaaaccaagcagggttccctagct
ggagaagaggaattcttggtaaatgcctgtctagaggaggaaggttcacc
ttttggcctggcttatcctacctaccttagggaccagcacagttggacca
catccttcagcagctggagacatcttccctcttgctggaaaatggttact
gttgcctgtgttctcccttatgttttagaggacagtgcttctatgggtaa
cccaaagcccagggccatgcagaaattactgacacagcagcatgctgcac
ttttgtgtgaattagccaatggaatctcttcagcaaacagtgccacagca
aagtcaacacagttgaggagaatgtaacatgatccggtcattttggtaga
gtcagagaagtaccggctcgttacgaggaaaggtcttcccattaccaggc
ctggaaatgagaagttcgttttcctgatttctaagcttctc
gaattctcagcagggtcagacacaaatgtgaaattcaaacacaatgaaag
atcctgatgaaagattcttaaaaaaaaaaaaaactattttttgagtgtgg
acacaagcaaagaagagctgccaaaaacaaaataacagaagggggggggg
ggaataagacttttactaaaatcaaaggctctcaaacacacacagcgaga
gtggcagataccaccttccatccttccatcctgacagtgctttgagaatc
aaagtctatgacataatgaattcgtgagtgtggaatcaaatgcacacata
gaacccagagctgacgtcccctgatcaagttctccttcaaaccaggaagt
ctcccgcacgtcccacctggatgcccgctaaggctcgtagagttctgtgt
ggtaaagttacagaggagtggggtgtggccagtggcaacaaggccctcaa
ggatgaatgaggatttttaccttctggggcaaccctgtgaggactatcaa
gcctctcccgtagcaggtcctcccaggaggagcacgttggtctggcatct
ttctacgctacatgaatgattggaaagcacagccatattgtccccaccta
cagtttttgcagggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_24618324_24619519
seq2: B6Ng01-313F18.b_47_1237

seq1  GAATTCCAAGCTGAGAGTTTTGACTCCTGGAGCCAAAGAATCCTTTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTGAGAGTTTTGACTCCTGGAGCCAAAGAATCCTTTGTTC  50

seq1  TGAGGATTACATCACAGAACTATTTTTAGAGGCCAAGTCTGCTTTGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTACATCACAGAACTATTTTTAGAGGCCAAGTCTGCTTTGCCAG  100

seq1  GGGCCGAGGGTTACTGCCTTCCCCCTCTGCCTTCCAACTCCAGAATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGAGGGTTACTGCCTTCCCCCTCTGCCTTCCAACTCCAGAATTTTT  150

seq1  TATTCCCCTTGTCCATTTCTCTTCTTCCCAGAATTGATCGTATGAATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCTTGTCCATTTCTCTTCTTCCCAGAATTGATCGTATGAATGGC  200

seq1  CAAGGATAAATGAAGGCCTTATGAAGGCCACCTTGGGTGTAGGTGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATAAATGAAGGCCTTATGAAGGCCACCTTGGGTGTAGGTGCCACC  250

seq1  TCTGGGTGGTTCCAGAGAGGTGAGTACAGGGACTATATATCATAAGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGGTTCCAGAGAGGTGAGTACAGGGACTATATATCATAAGACCT  300

seq1  TACCCAGTAGAGAACATTTTACAGTGTCTGAAACCCGAGGCCAGGACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTAGAGAACATTTTACAGTGTCTGAAACCCGAGGCCAGGACTCT  350

seq1  GGAGAGATGGTGGAGTCTTCCTGCCGCCTCTGTGCCCAGCTAAAACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGTGGAGTCTTCCTGCCGCCTCTGTGCCCAGCTAAAACAAGA  400

seq1  TATATCTAGTTCAGCAACCAAGGAGAACAACAGCCAGCTGGGAAGGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTAGTTCAGCAACCAAGGAGAACAACAGCCAGCTGGGAAGGGTCT  450

seq1  CTGTTTGCAAGATGGCTTTCTACAGCAGCAAGATCTGACTTAGAAAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCAAGATGGCTTTCTACAGCAGCAAGATCTGACTTAGAAAGGAC  500

seq1  AGGCCTACGAACAGAGGGATGTCTCCTCTCCTCAGTTGGGTATGAGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTACGAACAGAGGGATGTCTCCTCTCCTCAGTTGGGTATGAGCAGT  550

seq1  TCTAGCTTTTTCCTGTCCACTTCACCCTCTTCGTTCAATGTGGGCCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTTTTCCTGTCCACTTCACCCTCTTCGTTCAATGTGGGCCTCTG  600

seq1  TGTACCAAAGCAGGATGGGACATTGAGGTGCTAAGGGTGCTGAGAACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAAAGCAGGATGGGACATTGAGGTGCTAAGGGTGCTGAGAACCAG  650

seq1  ACAGCATAAGTCACTGTCCCTAGTTGTTGAAACTATTAGCCAACTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATAAGTCACTGTCCCTAGTTGTTGAAACTATTAGCCAACTCTTCT  700

seq1  GTCTTTGAATGTAGCGTTCTTTCCAGTAAACCAAGCAGGGTTCCCTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAATGTAGCGTTCTTTCCAGTAAACCAAGCAGGGTTCCCTAGCT  750

seq1  GGAGAAGAGGAATTCTTGGTAAATGCCTGTCTAGAGGAGGAAGGTTCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGGAATTCTTGGTAAATGCCTGTCTAGAGGAGGAAGGTTCACC  800

seq1  -TTTGGCCTGGCTTATCCTACCTACCTTAGGGACCAGCACAGTTGGACCA  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCTGGCTTATCCTACCTACCTTAGGGACCAGCACAGTTGGACCA  850

seq1  CATCCTTCAGCAGCTGGAGACATCTTCCCTCTTGCTGGAAAATGGTTACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCAGCAGCTGGAGACATCTTCCCTCTTGCTGGAAAATGGTTACT  900

seq1  GTTGCCTGTGTTCTCCCTTATGTTTTAGAGGACAGTGCTTCTAT-GGTAA  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTGCCTGTGTTCTCCCTTATGTTTTAGAGGACAGTGCTTCTATGGGTAA  950

seq1  CCCAAAGCCCAGGGGCATGCAG-AATTACTGACACAGCAGCATGCTGCAC  997
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  CCCAAAGCCCAGGGCCATGCAGAAATTACTGACACAGCAGCATGCTGCAC  1000

seq1  TTTTGTGTGAATTAGCCAATGGAATCTCCTTCAGGCAAACAGTGCCACAG  1047
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TTTTGTGTGAATTAGCCAATGGAATCT-CTTCA-GCAAACAGTGCCACAG  1048

seq1  CAAAGTCACACA-AGTTGAGGGAGAATGTAACATGGATCCCGTCATTTT-  1095
      |||||||| ||| |||||| |||||||||||||| ||||| |||||||| 
seq2  CAAAGTCA-ACACAGTTGA-GGAGAATGTAACAT-GATCCGGTCATTTTG  1095

seq1  GTAGGGAGTCAGAGAAAGTACCCGCTCGGTAACGAGGAAAGGGTTCTTCC  1145
      |||  ||||||||| ||||||| |||| || |||||||||||  ||||||
seq2  GTA--GAGTCAGAG-AAGTACCGGCTC-GTTACGAGGAAAGG--TCTTCC  1139

seq1  ACATAACCA-GCCT-GAATAGAG-AGTTCGTTTTCTCTGTTTTCTAAGCT  1192
       ||| |||| |||| |||  ||| ||||||||||| ||| ||||||||||
seq2  -CATTACCAGGCCTGGAAATGAGAAGTTCGTTTTC-CTGATTTCTAAGCT  1187

seq1  TCTC  1196
      ||||
seq2  TCTC  1191

seq1: chr8_24821379_24821995
seq2: B6Ng01-313F18.g_66_682 (reverse)

seq1  AGTCCCTGCAAAAACTGTAGGTGGGGACAATATGGCTGTGCTTTCCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGCAAAAACTGTAGGTGGGGACAATATGGCTGTGCTTTCCAATC  50

seq1  ATTCATGTAGCGTAGAAAGATGCCAGACCAACGTGCTCCTCCTGGGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTAGCGTAGAAAGATGCCAGACCAACGTGCTCCTCCTGGGAGGA  100

seq1  CCTGCTACGGGAGAGGCTTGATAGTCCTCACAGGGTTGCCCCAGAAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTACGGGAGAGGCTTGATAGTCCTCACAGGGTTGCCCCAGAAGGTA  150

seq1  AAAATCCTCATTCATCCTTGAGGGCCTTGTTGCCACTGGCCACACCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTCATTCATCCTTGAGGGCCTTGTTGCCACTGGCCACACCCCAC  200

seq1  TCCTCTGTAACTTTACCACACAGAACTCTACGAGCCTTAGCGGGCATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTAACTTTACCACACAGAACTCTACGAGCCTTAGCGGGCATCCA  250

seq1  GGTGGGACGTGCGGGAGACTTCCTGGTTTGAAGGAGAACTTGATCAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACGTGCGGGAGACTTCCTGGTTTGAAGGAGAACTTGATCAGGGG  300

seq1  ACGTCAGCTCTGGGTTCTATGTGTGCATTTGATTCCACACTCACGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAGCTCTGGGTTCTATGTGTGCATTTGATTCCACACTCACGAATTC  350

seq1  ATTATGTCATAGACTTTGATTCTCAAAGCACTGTCAGGATGGAAGGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCATAGACTTTGATTCTCAAAGCACTGTCAGGATGGAAGGATGG  400

seq1  AAGGTGGTATCTGCCACTCTCGCTGTGTGTGTTTGAGAGCCTTTGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGTATCTGCCACTCTCGCTGTGTGTGTTTGAGAGCCTTTGATTTT  450

seq1  AGTAAAAGTCTTATTCCCCCCCCCCCCTTCTGTTATTTTGTTTTTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGTCTTATTCCCCCCCCCCCCTTCTGTTATTTTGTTTTTGGCAG  500

seq1  CTCTTCTTTGCTTGTGTCCACACTCAAAAAATAGTTTTTTTTTTTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTGCTTGTGTCCACACTCAAAAAATAGTTTTTTTTTTTTTTAA  550

seq1  GAATCTTTCATCAGGATCTTTCATTGTGTTTGAATTTCACATTTGTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTCATCAGGATCTTTCATTGTGTTTGAATTTCACATTTGTGTCT  600

seq1  GACCCTGCTGAGAATTC  617
      |||||||||||||||||
seq2  GACCCTGCTGAGAATTC  617