BAC Information

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BAC

Clone NameB6Ng01-313G22
Chromosome8 (Build37)
Map Location 80,145,260 - 80,309,310
singlet/doubletdoublet
Overlap geneEdnra
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34
Downstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313G22.bB6Ng01-313G22.g
ACCGA104648GA104649
length1,0721,047
definitionB6Ng01-313G22.b B6Ng01-313G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,308,228 - 80,309,310)(80,145,260 - 80,146,299)
sequence
gaattccatatttgccagagacatgaccgcccacaagactgaagcagatg
ctttctgacatctaacaggacaaactaacaaccttcgaacaaaacttctt
aactgtctgtgatagcctatttacacttgaaatatcttaaacaataataa
tattgcatcattatttattaattagaacagttacatgttatcactgtatt
tcataattatctggatattgctgcattaaaagtgagttctaagatgctgt
atacagccatctcacaaacatatccacagattcaggtaactaacagagag
acctaatagtgtctaaaacagcacagaacacactagttccaattcacttt
ttgattttttttttgtttggttttggctttggttttggtttctgcgaaaa
gggagtttctacctaggcaatgctggttcttaactcatgctttgcacttc
tctgcttgcccaggatggtcctgaactcctgttttccactcctctactat
cccaggctggactcgaactcatgatttctggtcctcagctgactctgtgc
tagaatgtcaggcaagttctaacaatctcaggatctcatttagtttttaa
taacgctctcaatcaactgccccatcacacacttgatgatttattttatt
ttataatgtttagtgtgctgtaaacataatctagtgtttagtgaaggtca
aaaggcacttgattagttcttaaacataatcaaaatttgctagtatcaaa
aatatctctgtaggaactggtgagatcactgtgctcaagagaacaaaccg
ctctttcagagaacctgaacttagttcccaccacccagatggcttggctc
acaactgccaataactccagctccaggagacttgatgtgctcattcggtc
tccgtgtgtgctccatacacataatttaaaaatatttgcctattagactt
ttcattatacatttggatatatgacatacattttaaactgttttttctgc
tgatgatctttacacatatcatgtataacatgggatttatctagatctta
catattaagtatgaatatttaa
gaattcctttgttataagctgagtactgcattctgttctggatgcttggg
ctgtgaattatgttctatgcatggttctgggttatagtaagaatgagatt
tataaagacagagggagactaagacagccattctcaggtcaccatggtca
gaaggatgggtgagcctctatttgttccggacttcgaggccagcctggtc
tacagagggagttccagggtagctagggcttacacagagaaatcctgtct
agaaaacaaacaagtaaacagaagagagaaagaaaaaaagaaagaaagaa
agaaagaaagaaagaaaaaaaaatagagagaaagagaagaggaagagagg
aagaggaggaggaaaacagaacaaaatggggaaaatgagtggaggacctg
cactcttttgtgtgtgtttcctgactgcaatgtgaccagataaataagct
acctagtcccctctacaagctcacagctcctcagcggtgagatcaaaggg
aatgagagttgaaaagccgtcccaaccgtgaaaaggaccatgaccataga
gaggaatcaaagcaaagcaaacatcaaaccaaccaacccaggtgagtgag
acaggacagttagcaaagcacacggagtaggcagagatctggaggagaga
tttgaaaacacaaggccaggcacgtctttaatcccagcactcgggaggca
gaggtaggcagatttctgagttccaggccagcctggtctacagagtgagt
tccaggacagccagggctacacagagaaactctttgtctcgaaaaacata
caaacaaaacagaaaaaccaactcaaaccccacacagtggaaaaatccag
aaaggttattcaaagtctagaaaagagccaaacagtgttcaaaacttgaa
agggccagtcacttcaaagaatcaagcattcatcaatcaccaggcagggc
ctaagtagaaggactactttttagaggcagtttaagagaagggttggaga
catacacattacatgaacgaaaaaagaattaaaattctcaaaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_80308228_80309310
seq2: B6Ng01-313G22.b_47_1118 (reverse)

seq1  TTAAATATTTCCATAATAAATATGGTAAGGATCTAAGATAAATCCCATGT  50
      |||||||||  |||| | ||||| |||| ||||| |||||||||||||||
seq2  TTAAATATT--CATACTTAATAT-GTAA-GATCT-AGATAAATCCCATGT  45

seq1  TATACATGATAATGTGTAAAGATTTATCAACCAGAAAAAACAAGTTAAAA  100
      |||||||||| ||||||||||| | ||| | |||||||||| |||| |||
seq2  TATACATGAT-ATGTGTAAAGA-TCATC-AGCAGAAAAAAC-AGTTTAAA  91

seq1  ATGTTATGTCATATAATCCAAATGTATAATGAAAAGTCTAATAGGCAAAT  150
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATG-TATGTCATAT-ATCCAAATGTATAATGAAAAGTCTAATAGGCAAAT  139

seq1  ATTTTTAAATTATGTGTATGGAGCACACACGGAGACCGAATGAGCACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATTATGTGTATGGAGCACACACGGAGACCGAATGAGCACATC  189

seq1  AAGTCTCCTGGAGCTGGAGTTATTGGCAGTTGTGAGCCAAGCCATCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCTGGAGCTGGAGTTATTGGCAGTTGTGAGCCAAGCCATCTGGG  239

seq1  TGGTGGGAACTAAGTTCAGGTTCTCTGAAAGAGCGGTTTGTTCTCTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGAACTAAGTTCAGGTTCTCTGAAAGAGCGGTTTGTTCTCTTGAG  289

seq1  CACAGTGATCTCACCAGTTCCTACAGAGATATTTTTGATACTAGCAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGATCTCACCAGTTCCTACAGAGATATTTTTGATACTAGCAAATT  339

seq1  TTGATTATGTTTAAGAACTAATCAAGTGCCTTTTGACCTTCACTAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATGTTTAAGAACTAATCAAGTGCCTTTTGACCTTCACTAAACAC  389

seq1  TAGATTATGTTTACAGCACACTAAACATTATAAAATAAAATAAATCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTATGTTTACAGCACACTAAACATTATAAAATAAAATAAATCATCA  439

seq1  AGTGTGTGATGGGGCAGTTGATTGAGAGCGTTATTAAAAACTAAATGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGATGGGGCAGTTGATTGAGAGCGTTATTAAAAACTAAATGAGA  489

seq1  TCCTGAGATTGTTAGAACTTGCCTGACATTCTAGCACAGAGTCAGCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGATTGTTAGAACTTGCCTGACATTCTAGCACAGAGTCAGCTGAG  539

seq1  GACCAGAAATCATGAGTTCGAGTCCAGCCTGGGATAGTAGAGGAGTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAAATCATGAGTTCGAGTCCAGCCTGGGATAGTAGAGGAGTGGAA  589

seq1  AACAGGAGTTCAGGACCATCCTGGGCAAGCAGAGAAGTGCAAAGCATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGTTCAGGACCATCCTGGGCAAGCAGAGAAGTGCAAAGCATGAG  639

seq1  TTAAGAACCAGCATTGCCTAGGTAGAAACTCCCTTTTCGCAGAAACCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCAGCATTGCCTAGGTAGAAACTCCCTTTTCGCAGAAACCAAA  689

seq1  ACCAAAGCCAAAACCAAACAAAAAAAAAATCAAAAAGTGAATTGGAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCCAAAACCAAACAAAAAAAAAATCAAAAAGTGAATTGGAACTA  739

seq1  GTGTGTTCTGTGCTGTTTTAGACACTATTAGGTCTCTCTGTTAGTTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCTGTGCTGTTTTAGACACTATTAGGTCTCTCTGTTAGTTACCT  789

seq1  GAATCTGTGGATATGTTTGTGAGATGGCTGTATACAGCATCTTAGAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTGGATATGTTTGTGAGATGGCTGTATACAGCATCTTAGAACTC  839

seq1  ACTTTTAATGCAGCAATATCCAGATAATTATGAAATACAGTGATAACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATGCAGCAATATCCAGATAATTATGAAATACAGTGATAACATG  889

seq1  TAACTGTTCTAATTAATAAATAATGATGCAATATTATTATTGTTTAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTCTAATTAATAAATAATGATGCAATATTATTATTGTTTAAGAT  939

seq1  ATTTCAAGTGTAAATAGGCTATCACAGACAGTTAAGAAGTTTTGTTCGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGTGTAAATAGGCTATCACAGACAGTTAAGAAGTTTTGTTCGAA  989

seq1  GGTTGTTAGTTTGTCCTGTTAGATGTCAGAAAGCATCTGCTTCAGTCTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTAGTTTGTCCTGTTAGATGTCAGAAAGCATCTGCTTCAGTCTTG  1039

seq1  TGGGCGGTCATGTCTCTGGCAAATATGGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  TGGGCGGTCATGTCTCTGGCAAATATGGAATTC  1072

seq1: chr8_80145260_80146299
seq2: B6Ng01-313G22.g_67_1113

seq1  GAATTCCTTTGTTATAAGCTGAGTACTGCATTCTGTTCTGGATGCTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGTTATAAGCTGAGTACTGCATTCTGTTCTGGATGCTTGGG  50

seq1  CTGTGAATTATGTTCTATGCATGGTTCTGGGTTATAGTAAGAATGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATTATGTTCTATGCATGGTTCTGGGTTATAGTAAGAATGAGATT  100

seq1  TATAAAGACAGAGGGAGACTAAGACAGCCATTCTCAGGTCACCATGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGACAGAGGGAGACTAAGACAGCCATTCTCAGGTCACCATGGTCA  150

seq1  GAAGGATGGGTGAGCCTCTATTTGTTCCGGACTTCGAGGCCAGCCTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGGGTGAGCCTCTATTTGTTCCGGACTTCGAGGCCAGCCTGGTC  200

seq1  TACAGAGGGAGTTCCAGGGTAGCTAGGGCTTACACAGAGAAATCCTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGGAGTTCCAGGGTAGCTAGGGCTTACACAGAGAAATCCTGTCT  250

seq1  AGAAAACAAACAAGTAAACAGAAGAGAGAAAGAAAAAAAGAAAGAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAACAAGTAAACAGAAGAGAGAAAGAAAAAAAGAAAGAAAGAA  300

seq1  AGAAAGAAAGAAAGAAAAAAAAATAGAGAGAAAGAGAAGAGGAAGAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAAAAAAATAGAGAGAAAGAGAAGAGGAAGAGAGG  350

seq1  AAGAGGAGGAGGAAAACAGAACAAAATGGGGAAAATGAGTGGAGGACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGGAGGAAAACAGAACAAAATGGGGAAAATGAGTGGAGGACCTG  400

seq1  CACTCTTTTGTGTGTGTTTCCTGACTGCAATGTGACCAGATAAATAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTTGTGTGTGTTTCCTGACTGCAATGTGACCAGATAAATAAGCT  450

seq1  ACCTAGTCCCCTCTACAAGCTCACAGCTCCTCAGCGGTGAGATCAAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTCCCCTCTACAAGCTCACAGCTCCTCAGCGGTGAGATCAAAGGG  500

seq1  AATGAGAGTTGAAAAGCCGTCCCAACCGTGAAAAGGACCATGACCATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGTTGAAAAGCCGTCCCAACCGTGAAAAGGACCATGACCATAGA  550

seq1  GAGGAATCAAAGCAAAGCAAACATCAAACCAACCAACCCAGGTGAGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATCAAAGCAAAGCAAACATCAAACCAACCAACCCAGGTGAGTGAG  600

seq1  ACAGGACAGTTAGCAAAGCACACGGAGTAGGCAGAGATCTGGAGGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAGTTAGCAAAGCACACGGAGTAGGCAGAGATCTGGAGGAGAGA  650

seq1  TTTGAAAACACAAGGCCAGGCACGTCTTTAATCCCAGCACTCGGGAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACACAAGGCCAGGCACGTCTTTAATCCCAGCACTCGGGAGGCA  700

seq1  GAGGTAGGCAGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAGAGTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGCAGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAGAGTGAGT  750

seq1  TCCAGGACAGCCAGGGCTACACAGAGAAACTC-TTGTCTCGAAAAACATA  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTACACAGAGAAACTCTTTGTCTCGAAAAACATA  800

seq1  CAAACAAAACAGAAAAACCAACTCAAACCCCACACAGTGGAAAAATCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACAGAAAAACCAACTCAAACCCCACACAGTGGAAAAATCCAG  850

seq1  AAAGGTTATTCAAAGTCTAGAAAAGAGCCAAACAGTG-TCAAAAC-TGAA  897
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  AAAGGTTATTCAAAGTCTAGAAAAGAGCCAAACAGTGTTCAAAACTTGAA  900

seq1  AGGGCCAGTCAC-TCAAAGAATCAAGCA-TCATCAATCACCAGGCAGGG-  944
      |||||||||||| ||||||||||||||| |||||||||||||||||||| 
seq2  AGGGCCAGTCACTTCAAAGAATCAAGCATTCATCAATCACCAGGCAGGGC  950

seq1  CTAAGTAGAAGGACCAC-TTTTAGAGGCAGTTAAGGAGA--GGGTGGAGA  991
      |||||||||||||| || |||||||||||||| | ||||  || ||||||
seq2  CTAAGTAGAAGGACTACTTTTTAGAGGCAGTTTAAGAGAAGGGTTGGAGA  1000

seq1  CAATAACACA-TACATAAAGAAAAAAATAAAATTTAAAA--ATCAAAATT  1038
      ||   ||||| ||||| ||  |||||| ||   ||||||   ||||||||
seq2  CA--TACACATTACATGAACGAAAAAAGAA---TTAAAATTCTCAAAATT  1045

seq1  TC  1040
      ||
seq2  TC  1047