BAC Information

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BAC

Clone NameB6Ng01-313J24
Chromosome8 (Build37)
Map Location 124,924,933 - 125,104,576
singlet/doubletdoublet
Overlap gene5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2
Downstream geneTrappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313J24.bB6Ng01-313J24.g
ACCGA104782GA104783
length470345
definitionB6Ng01-313J24.b B6Ng01-313J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,924,933 - 124,925,408)(125,104,232 - 125,104,576)
sequence
ctccatgcttctctccagctttggccttagtgctgctgctgctgctactg
ttctgtgtgtgtgtgtgttactgtgtgtgtgtgtgtgttactgtgtgtgt
gtgtgtgtccgtgcatatcatgtatggtgtgggggtccaaggacagcttt
gtggaattgttgatggttttctagggccaaacacaaagcatctacagcta
gtgtttcactgtccgagccatcctgacagtccttacaggtcttttaagaa
tatgtttctaactcattgagaaaatgccaattcctcttttgttgagtgtt
ttctctagaaatggatacagacggtttctctttgtcttcacctgttaaaa
atcttcttccccccagattgactgatgtgtgctgctgtcctattgcttgt
gttctatccttgtgttcttagctgcagacaccactcggtcagggtgtatt
tttgttatgtgggattggat
ataggctttcttatgggacagtgagtgaagagttacaggtgggagcttgg
aggagggggcactcaaagcacccatgctggaaggtctgtggccagcagag
atgactcctttcctgtgtccttctccacctatgtcctctagcccctcccc
aaggctgcctgtggttagggcagaattgtgtgaacgtgactgggaggaat
ggctaggtaatcaggcgggagagagttccatgattctcatggcagtcctt
aaggagagtccatagtcgctgggtgtggtggcgcacacctttaatcccag
cactcgggaggcagaggcatgcggatttctgatttcaaggctagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_124924933_124925408
seq2: B6Ng01-313J24.b_48_523

seq1  GAATTCCTCCATGCTTCTCTCCAGCTTTGGCCTTAGTGCTGCTGCTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCATGCTTCTCTCCAGCTTTGGCCTTAGTGCTGCTGCTGCTG  50

seq1  CTACTGTTCTGTGTGTGTGTGTGTTACTGTGTGTGTGTGTGTGTTACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTCTGTGTGTGTGTGTGTTACTGTGTGTGTGTGTGTGTTACTGT  100

seq1  GTGTGTGTGTGTGTCCGTGCATATCATGTATGGTGTGGGGGTCCAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTCCGTGCATATCATGTATGGTGTGGGGGTCCAAGGAC  150

seq1  AGCTTTGTGGAATTGTTGATGGTTTTCTAGGGCCAAACACAAAGCATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTGGAATTGTTGATGGTTTTCTAGGGCCAAACACAAAGCATCTA  200

seq1  CAGCTAGTGTTTCACTGTCCGAGCCATCCTGACAGTCCTTACAGGTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGTGTTTCACTGTCCGAGCCATCCTGACAGTCCTTACAGGTCTTT  250

seq1  TAAGAATATGTTTCTAACTCATTGAGAAAATGCCAATTCCTCTTTTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATATGTTTCTAACTCATTGAGAAAATGCCAATTCCTCTTTTGTTG  300

seq1  AGTGTTTTCTCTAGAAATGGATACAGACGGTTTCTCTTTGTCTTCACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTCTCTAGAAATGGATACAGACGGTTTCTCTTTGTCTTCACCTG  350

seq1  TTAAAAATCTTCTTCCCCCCAGATTGACTGATGTGTGCTGCTGTCCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCTTCTTCCCCCCAGATTGACTGATGTGTGCTGCTGTCCTATT  400

seq1  GCTTGTGTTCTATCCTTGTGTTCTTAGCTGCAGACACCACTCGGTCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTTCTATCCTTGTGTTCTTAGCTGCAGACACCACTCGGTCAGGG  450

seq1  TGTATTTTTGTTATGTGGGATTGGAT  476
      ||||||||||||||||||||||||||
seq2  TGTATTTTTGTTATGTGGGATTGGAT  476

seq1: chr8_125104232_125104576
seq2: B6Ng01-313J24.g_73_417 (reverse)

seq1  GCTAGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGG  50
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GCTAGCCTTGAAATCAGAAATCCGCATGCCTCTGCCTCCCGAGTGCTGGG  50

seq1  ATTAAAGGTGTGCGCCACCACACCCAGCGACTATGGACTCTCCTTAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTGCGCCACCACACCCAGCGACTATGGACTCTCCTTAAGGA  100

seq1  CTGCCATGAGAATCATGGAACTCTCTCCCGCCTGATTACCTAGCCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGAGAATCATGGAACTCTCTCCCGCCTGATTACCTAGCCATTCC  150

seq1  TCCCAGTCACGTTCACACAATTCTGCCCTAACCACAGGCAGCCTTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCACGTTCACACAATTCTGCCCTAACCACAGGCAGCCTTGGGGA  200

seq1  GGGGCTAGAGGACATAGGTGGAGAAGGACACAGGAAAGGAGTCATCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAGAGGACATAGGTGGAGAAGGACACAGGAAAGGAGTCATCTCTG  250

seq1  CTGGCCACAGACCTTCCAGCATGGGTGCTTTGAGTGCCCCCTCCTCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACAGACCTTCCAGCATGGGTGCTTTGAGTGCCCCCTCCTCCAAG  300

seq1  CTCCCACCTGTAACTCTTCACTCACTGTCCCATAAGAAAGCCTAT  345
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTGTAACTCTTCACTCACTGTCCCATAAGAAAGCCTAT  345