BAC Information

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BAC

Clone NameB6Ng01-313O21
Chromosome8 (Build37)1 (Build37)
Map Location 43,686,813 - 43,688,00316,905,331 - 16,906,051
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039376, Gm1815, LOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313O21.bB6Ng01-313O21.g
ACCGA105007GA105008
length1,229975
definitionB6Ng01-313O21.b B6Ng01-313O21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,686,813 - 43,688,003)(16,905,331 - 16,906,051)
sequence
gaattctttggctaaccactttcaaactgagatactgtgttagaatattc
atcaaaaagtccatttacatctccattagtattttatttgcagcttggat
tcacaatgcaggaggcagtgggaagcaataacagctaaccatagacaacc
aagaacccagtgctctactgtatgagagctattttgttgttagagaagaa
accattcaatagaattaagtagaaataatttattttattttaataactga
ataaacagaggaggaagaaagagcaagatcaaagacagaaggcaaatcag
taactcatcaaacaaagccagtagtttccaagtcttttaaatgatttctt
tattatttcatttactgctaaagtaaatctttcaattgattcagaaatac
tgactaataactgaaaaaaaaactaatgctgccttatataataggttttt
acaaatgagaattatatttttacccaaagtccaacaaatagccacactta
tttcaattatggatatagaacaggaaaaaaaatctacttttcagttctag
agataataagtttaaactttttgcttttaccaacaacttgttgctacacc
aagtgtttccaaataaacatacttttattaacaaatatagtatttctata
gttaacgaataggataatatttaaagatatgatcaaaactaatatcattt
atgagaacatcgtatgagcctctctataaaggggttaggaatttgcaact
ttaatcttattctggaaagccattgaacaatttcataggagcattctagc
taatgaaaccaaagtcataaccaagagttgtatagaggtattagattaca
gaaaatgaaacagataattaatagtaatagaatctgatcttagattgggt
tctccactgaagatgaaaataaatcaattacactgatagttattttgggg
aaactgggctcctgctggtataatactgtggattagatatcgtgagaagt
gtggatttaagtgttcttgcatagatgcttgctttccaatatgccattat
gtgatgtcagaatgaggtgaatcctcaggtgccatgacatcagaagaata
atgttaccctctctttggatactgactctcatgaagagactttataaaag
agaataatactgatccctgcctagtcttggaacggtctggcttgccaggc
aatcaattaagaaatgtcgctgccttgcc

gaattcaacttatgcagaaaaaccttgaaatcaaaggttcagaggctcaa
ctccgtggctggagattggagatagcatttctttgaactggttgcatgat
tgcacatgatgtcattagagcttgcctttccagcgagtgaatgagaaagg
agagttgtctaggagctggcatacatagaagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagtgctttactaggcaa
acttcttaaagtttccaccccctctaagaaattccaagctgagaatgaag
accttaacacatgagcatttataggatgttacggactcaaacaatatcat
tgttcacaaattatattcaataaatacatagatttttctctaaaatatta
ttttaatatatcttaaacaaatgattataataaccacctggagaggtctg
tgaacatttatttctttcacttactataaagaggtatacaggctagaatt
taaaaatgaagtaaattgcagctacccaatgaagctggctctatcggtat
tattttttaagtttttaaaattagatatttttttatttacatttcaaatg
ttatcccctttcctagtttcccctctgaaaacccccatcccctcctctgt
ctccctgttcaccaacccacttactcttgcttcctggctctggcattacc
ttatactggggcatagaaacttcacaggaccaagggcctctcctcccatt
gatgaccaactaggccatcctctgctacatatgcagctagagccacaagt
tccaccatgtgttttctttggttggtggtttagtcccagggagctctgga
gatactggttagtttcatattgttgctcctcctatggggcatcaacatct
tcccctctttgggtactttctctagctccttctttggtgaccccatgctc
taaccaatggatggctgtgagcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_43686813_43688003
seq2: B6Ng01-313O21.b_47_1275

seq1  GAATTCTTTGGCTAACCACTTTCAAACTGAGATACTGTGTTAGAATATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGCTAACCACTTTCAAACTGAGATACTGTGTTAGAATATTC  50

seq1  ATCAAAAAGTCCATTTACATCTCCATTAGTATTTTATTTGCAGCTTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAGTCCATTTACATCTCCATTAGTATTTTATTTGCAGCTTGGAT  100

seq1  TCACAATGCAGGAGGCAGTGGGAAGCAATAACAGCTAACCATAGACAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGCAGGAGGCAGTGGGAAGCAATAACAGCTAACCATAGACAACC  150

seq1  AAGAACCCAGTGCTCTACTGTATGAGAGCTATTTTGTTGTTAGAGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCAGTGCTCTACTGTATGAGAGCTATTTTGTTGTTAGAGAAGAA  200

seq1  ACCATTCAATAGAATTAAGTAGAAATAATTTATTTTATTTTAATAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCAATAGAATTAAGTAGAAATAATTTATTTTATTTTAATAACTGA  250

seq1  ATAAACAGAGGAGGAAGAAAGAGCAAGATCAAAGACAGAAGGCAAATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGAGGAGGAAGAAAGAGCAAGATCAAAGACAGAAGGCAAATCAG  300

seq1  TAACTCATCAAACAAAGCCAGTAGTTTCCAAGTCTTTTAAATGATTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATCAAACAAAGCCAGTAGTTTCCAAGTCTTTTAAATGATTTCTT  350

seq1  TATTATTTCATTTACTGCTAAAGTAAATCTTTCAATTGATTCAGAAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTCATTTACTGCTAAAGTAAATCTTTCAATTGATTCAGAAATAC  400

seq1  TGACTAATAACTGAAAAAAAAACTAATGCTGCCTTATATAATAGGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATAACTGAAAAAAAAACTAATGCTGCCTTATATAATAGGTTTTT  450

seq1  ACAAATGAGAATTATATTTTTACCCAAAGTCCAACAAATAGCCACACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAGAATTATATTTTTACCCAAAGTCCAACAAATAGCCACACTTA  500

seq1  TTTCAATTATGGATATAGAACAGGAAAAAAAATCTACTTTTCAGTTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTATGGATATAGAACAGGAAAAAAAATCTACTTTTCAGTTCTAG  550

seq1  AGATAATAAGTTTAAACTTTTTGCTTTTACCAACAACTTGTTGCTACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAAGTTTAAACTTTTTGCTTTTACCAACAACTTGTTGCTACACC  600

seq1  AAGTGTTTCCAAATAAACATACTTTTATTAACAAATATAGTATTTCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTCCAAATAAACATACTTTTATTAACAAATATAGTATTTCTATA  650

seq1  GTTAACGAATAGGATAATATTTAAAGATATGATCAAAACTAATATCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACGAATAGGATAATATTTAAAGATATGATCAAAACTAATATCATTT  700

seq1  ATGAGAACATCGTATGAGCCTCTCTATAAAGGGGTTAGGAATTTGCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACATCGTATGAGCCTCTCTATAAAGGGGTTAGGAATTTGCAACT  750

seq1  TTAATCTTATTCTGGAAAGCCATTGAACAATTTCATAGGAGCATTCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTATTCTGGAAAGCCATTGAACAATTTCATAGGAGCATTCTAGC  800

seq1  TAATGAAACCAAAGTCATAACCAAGAGTTGTATAGAGGTATTAGATTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACCAAAGTCATAACCAAGAGTTGTATAGAGGTATTAGATTACA  850

seq1  GAAAATGAAACAGATAATTAATAGTAATAGAATCTGATCTTAGATTGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAAACAGATAATTAATAGTAATAGAATCTGATCTTAGATTGGGT  900

seq1  TCTCCACTGAAGATGAAAATAAATCAATTACACTGATAGTTATTTTGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTGAAGATGAAAATAAATCAATTACACTGATAGTTATTTTGGGG  950

seq1  AAACTGGGCTCCTGCTGGTAT-ATACTGTGGATTAGATATCGTGAG-AGT  998
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  AAACTGGGCTCCTGCTGGTATAATACTGTGGATTAGATATCGTGAGAAGT  1000

seq1  GTGGATTTTAAGTGTTCTTGCATAGATGCTTGCTTTCCAATATGCCCATT  1048
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGGA-TTTAAGTGTTCTTGCATAGATGCTTGCTTTCCAATATG-CCATT  1048

seq1  ATGGTGATGTCAG-ATGAGGTGAAT-CTCA-GTGGCATGACCATCAGAAG  1095
      || |||||||||| ||||||||||| |||| ||| ||||| |||||||||
seq2  AT-GTGATGTCAGAATGAGGTGAATCCTCAGGTGCCATGA-CATCAGAAG  1096

seq1  GAATTAATG-TACCC-CTCTTTGAGTACTGACTCTCATG-AGAGACTTT-  1141
        | ||||| ||||| |||||||  |||||||||||||| ||||||||| 
seq2  --AATAATGTTACCCTCTCTTTGGATACTGACTCTCATGAAGAGACTTTA  1144

seq1  TATAA-AGAATAATACTGATCCCTTGCTAGTCTT-GAACGTCCTGCCTTG  1189
      || || ||||||||||||||||||  |||||||| |||||  ||| ||||
seq2  TAAAAGAGAATAATACTGATCCCTGCCTAGTCTTGGAACGGTCTGGCTTG  1194

seq1  CC---------------------------------  1191
      ||                                 
seq2  CCAGGCAATCAATTAAGAAATGTCGCTGCCTTGCC  1229


seq1: chr1_16905331_16906051
seq2: B6Ng01-313O21.g_629_996 (reverse)

seq1  AAGGAGCTAGAGAAAGTACCAAAGAAGCTAAAGGGATCTGCAACCCTATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTGCATATGCATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCATAAAAGGGGATCGGGTGGGTAGGGGAGAGGGGGTGGGTGGCTATGGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGACTTTTGGTATAGCATTGCAAATGTAAATGAGC----GAAA-TACCTA  295
                                  || ||||    |||| ||||  
seq2  ----------------------------AAGGAGCTAGAGAAAGTACC--  20

seq1  ATAAAAAATGGAAAAAAAAAAAAAGAGTTGAT--TTTAAAACAGGTGCCA  343
         ||| | || || |          ||||||     | |  ||| || |
seq2  --CAAAGAGGGGAAGA---------TGTTGATGCCCCATAGGAGGAGCAA  59

seq1  C-GTCTGAATGTAGCAGAATACCTTCTTTCAGCTTGTTCTTCATATGCTG  392
      |  | ||||  || |  | || || |    ||||             |||
seq2  CAATATGAAACTAAC-CAGTATCTCC--AGAGCT-----------CCCTG  95

seq1  GGAGAGCTAGGGCAATAGACAATGTTTCTAATTTTTTTAAATTTAAAAAC  442
      |||   |||   ||  |  ||| |                    ||| ||
seq2  GGA---CTAAACCACCAACCAAAG-------------------AAAACAC  123

seq1  AATGTGTTACTTAAAATTATATCTTGAGCATGTGAAATTTTCTTAAAATT  492
      |  |||  ||||     | || ||   |||| ||                
seq2  ATGGTGGAACTTGTGGCTCTAGCT---GCATATG----------------  154

seq1  TGATTGTTAGAAAACACATGGTGGAACTAACTTGTGGCTCTAGGGGAGCA  542
             |||    || | | |||  |  | |||    || | ||||| |
seq2  -------TAG----CAGAGGATGG--CCTAGTTGGTCATCAATGGGAGGA  191

seq1  GAGGCCCTTATTCCTGTGAAGGCT------CCCAGTGTAGGGAAATGCCA  586
      |||||||||  ||||||||||  |      |||||| || || |||||||
seq2  GAGGCCCTTGGTCCTGTGAAGTTTCTATGCCCCAGTATAAGGTAATGCCA  241

seq1  G-GACTGGGAATGGGAGTGGGTGGATTGGGGAGCAGGGGGCGGTGGGAGG  635
      | | | || |    ||||  |||| |||| || ||||| |     |||||
seq2  GAGCCAGGAAGCAAGAGTAAGTGGGTTGGTGAACAGGGAGACAGAGGAGG  291

seq1  AGATAGGGCATTTTTGGAGGGGAAACTAGGAAAGGGGATAACATTTGAAA  685
       ||| |||  ||||  ||||||||||||||||||||||||||||||||||
seq2  GGAT-GGGGGTTTTCAGAGGGGAAACTAGGAAAGGGGATAACATTTGAAA  340

seq1  TGTAAATAAAGAAAATATCTAATAATTTTTTTTAAA  721
      |||||||||| |||||||||||       |||||||
seq2  TGTAAATAAA-AAAATATCTAA-------TTTTAAA  368


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