BAC Information

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BAC

Clone NameB6Ng01-314C15
Chromosome8 (Build37)
Map Location 38,171,811 - 38,299,298
singlet/doubletdoublet
Overlap geneLOC641121
Upstream geneD8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik
Downstream geneLOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314C15.bB6Ng01-314C15.g
ACCGA105181GA105182
length6221,140
definitionB6Ng01-314C15.b B6Ng01-314C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,171,811 - 38,172,327)(38,298,166 - 38,299,298)
sequence
gaattcagtttacaagtgttttattgaattttttgtatctatattcacca
gggacatttgtttataattttctttttgtttttgtgtgtgtaatgctggt
tttgccaatactttatagaatagtttgagaaacactggttgtagttcttt
tactaaagtctggtaaaactttgagtcaattataacgtgggccttttttt
tccttttggttaggaagttttaagattgctgcttcaacctcattgcctat
ccatttaaagattttaaaatgtcatcttagttcaaccttaggaggttata
tgtatttaggaatttatgcagttcatttagtttttccaatttggtagaat
agaggttgttgaagtgtgtacttgcgatcatctggatttcaatggcggct
gctgtcctatctccctttgtcctctagtcttacatatatagatagataga
tagatagatatagatatagatatatagatatatagatatagatatgtaga
tatgtatgtatgtgtaggggtctatgttagtatgtgtatttctctggatt
cctactaagaagacagaagcagtttcctacttttgcatctgaggaagact
cgctctttcactgggtattgaa

gaattcctgtcggctttctaattattttctcagtttgaaataagaccttg
tctttaataagagagagagatttctgtcacaggattgttttcagtgtgaa
cacaacaatgcaaagaaagagttcatgaagagaacagccacaagatctca
aaaacggagggaggtgttttgtataaatctccctataaattagcaaaata
taacatcctgcagtaaaatgctatcatcttcagagagacagattttaaaa
gagaaaatgaaagaaaatactttcaccttctttttggatggtagtatttt
cataattactattcagaaggtcacacaattgctgcagcagtcaaatactc
cctaacaaaggcatcaagtttagagcatggtatttgttatatttctttct
agctatttttaaagagcacatacaaagaaaatatatgcattgctggaaag
atgttttgcattttggaaaccacagagagactgaccatataactcggtca
ccctgttaaactacattggccatttatccatactcaacataaacacctag
cagatatctccatacatccttccaactagagcattaggagagaagcatct
gcctgtatttttactgtctggtacaatagccacatgagatagcatcttga
aatgtggccagtgaagtaccttcatcaagcacagtaggtataaaattaaa
ctcacagagaatacaatgtggcagtctgcctgggaagacatgcaaagata
tccctacagtggaaaaccatagctttcattcatgcaggtatgcactgtgc
attgtgcataccttctccataactcaataactttgcttttcatactcctc
tcccatcagtcctctctcttcatctagatgctcttacttttactcttcca
gcacatatgctgatatactttcatgcaactgcatcaaatacactatctca
gtgaatgagagaaaattcacaagatctgtcttttatggagactagcttaa
ttgttttctttaacaatttatctgcatctgtgttatttttgtaaacacat
atacttctctcttatgactgaaaaaatccaacatgtgtatgccatatact
tcctttatcgaattcacctctgctgtctcattggaccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38171811_38172327
seq2: B6Ng01-314C15.b_149_665

seq1  CAATACTTTATAGAATAGTTTGAGAAACACTGGTTGTAGTTCTTTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTTATAGAATAGTTTGAGAAACACTGGTTGTAGTTCTTTTACTA  50

seq1  AAGTCTGGTAAAACTTTGAGTCAATTATAACGTGGGCCTTTTTTTTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGTAAAACTTTGAGTCAATTATAACGTGGGCCTTTTTTTTCCTT  100

seq1  TTGGTTAGGAAGTTTTAAGATTGCTGCTTCAACCTCATTGCCTATCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGGAAGTTTTAAGATTGCTGCTTCAACCTCATTGCCTATCCATT  150

seq1  TAAAGATTTTAAAATGTCATCTTAGTTCAACCTTAGGAGGTTATATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTTTAAAATGTCATCTTAGTTCAACCTTAGGAGGTTATATGTAT  200

seq1  TTAGGAATTTATGCAGTTCATTTAGTTTTTCCAATTTGGTAGAATAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATTTATGCAGTTCATTTAGTTTTTCCAATTTGGTAGAATAGAGG  250

seq1  TTGTTGAAGTGTGTACTTGCGATCATCTGGATTTCAATGGCGGCTGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAGTGTGTACTTGCGATCATCTGGATTTCAATGGCGGCTGCTGT  300

seq1  CCTATCTCCCTTTGTCCTCTAGTCTTACATATATAGATAGATAGATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCCCTTTGTCCTCTAGTCTTACATATATAGATAGATAGATAGAT  350

seq1  AGATATAGATATAGATATATAGATATATAGATATAGATATGTAGATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGATATAGATATATAGATATATAGATATAGATATGTAGATATGT  400

seq1  ATGTATATGTAGATATATATGTAAATATGTATATATATTTGGATAATTTC  450
      |||||| |||||   | ||||| | ||||| ||| | | |||||   | |
seq2  ATGTATGTGTAGGGGTCTATGTTAGTATGTGTATTTCTCTGGATTCCTAC  450

seq1  GGATAAGACAGAAAATGTTCACTATTTCTTCTTCT-TGGAAGACATTGCT  499
        | |||||||||   |||  ||| || | | |||  ||||||| | |||
seq2  TAAGAAGACAGAAGCAGTTTCCTACTTTTGCATCTGAGGAAGAC-TCGCT  499

seq1  CTTTCACTGGGTATTGAA  517
      ||||||||||||||||||
seq2  CTTTCACTGGGTATTGAA  517


seq1: chr8_38298166_38299298
seq2: B6Ng01-314C15.g_66_1205 (reverse)

seq1  GATGG-CCAAT--GACAGCAGA-GTGAA-TCGATAAAGAAAGTATAT-GC  44
      ||||| |||||  ||||||||| ||||| ||||||||| |||||||| ||
seq2  GATGGTCCAATGAGACAGCAGAGGTGAATTCGATAAAGGAAGTATATGGC  50

seq1  ATACACATGTTGGATTTTTTCAGTCATAAAGAAGAAGAAAGTTATATTGT  94
      |||||||||||||||||||||||||||||   |||||     |||| |||
seq2  ATACACATGTTGGATTTTTTCAGTCATAAGAGAGAAG-----TATA-TGT  94

seq1  GTTTACAAAAATAAACACAGATGCAGAT-AATTGT--AAG-AAACAATTA  140
      |||||||||||| ||||||||||||||| ||||||  ||| |||||||||
seq2  GTTTACAAAAAT-AACACAGATGCAGATAAATTGTTAAAGAAAACAATTA  143

seq1  AGCTAGTCT-CAT-AAAGACAGATCTTGTG-ATTTTCTCTCATTCACTGA  187
      ||||||||| ||| |||||||||||||||| |||||||||||||||||||
seq2  AGCTAGTCTCCATAAAAGACAGATCTTGTGAATTTTCTCTCATTCACTGA  193

seq1  GATAGTGTATTTGATGCAGTTGCATGAAAGTATATCAGCATATGTGCTGG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTATTTGATGCAGTTGCATGAAAGTATATCAGCATATGTGCTGG  243

seq1  AAGAGTAAAAGTAAGAGCATCTAGATGAAGAGAGAGGACTGATGGGAGAG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAAAGTAAGAGCATCTAGATGAAGAGAGAGGACTGATGGGAGAG  293

seq1  GAGTATG-AAAGCAAAGTTATTGAGTTATGGAGAAGGTATGCACAATGCA  336
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGAAAAGCAAAGTTATTGAGTTATGGAGAAGGTATGCACAATGCA  343

seq1  CAGTGCATACCTGCATGAATGAAAGCTATGGTTTTCCACTGTAGGGATAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATACCTGCATGAATGAAAGCTATGGTTTTCCACTGTAGGGATAT  393

seq1  CTTTGCATGTCTTCCCAGGCAGACTGCCACATTGTATTCTCTGTGAGTTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATGTCTTCCCAGGCAGACTGCCACATTGTATTCTCTGTGAGTTT  443

seq1  AATTTTATACCTACTGTGCTTGATGAAGGTACTTCACTGGCCACATTTCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATACCTACTGTGCTTGATGAAGGTACTTCACTGGCCACATTTCA  493

seq1  AGATGCTATCTCATGTGGCTATTGTACCAGACAGTAAAAATACAGGCAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTATCTCATGTGGCTATTGTACCAGACAGTAAAAATACAGGCAGA  543

seq1  TGCTTCTCTCCTAATGCTCTAGTTGGAAGGATGTATGGAGATATCTGCTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCTCCTAATGCTCTAGTTGGAAGGATGTATGGAGATATCTGCTA  593

seq1  GGTGTTTATGTTGAGTATGGATAAATGGCCAATGTAGTTTAACAGGGTGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTATGTTGAGTATGGATAAATGGCCAATGTAGTTTAACAGGGTGA  643

seq1  CCGAGTTATATGGTCAGTCTCTCTGTGGTTTCCAAAATGCAAAACATCTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTTATATGGTCAGTCTCTCTGTGGTTTCCAAAATGCAAAACATCTT  693

seq1  TCCAGCAATGCATATATTTTCTTTGTATGTGCTCTTTAAAAATAGCTAGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAATGCATATATTTTCTTTGTATGTGCTCTTTAAAAATAGCTAGA  743

seq1  AAGAAATATAACAAATACCATGCTCTAAACTTGATGCCTTTGTTAGGGAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATAACAAATACCATGCTCTAAACTTGATGCCTTTGTTAGGGAG  793

seq1  TATTTGACTGCTGCAGCAATTGTGTGACCTTCTGAATAGTAATTATGAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACTGCTGCAGCAATTGTGTGACCTTCTGAATAGTAATTATGAAA  843

seq1  ATACTACCATCCAAAAAGAAGGTGAAAGTATTTTCTTTCATTTTCTCTTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACCATCCAAAAAGAAGGTGAAAGTATTTTCTTTCATTTTCTCTTT  893

seq1  TAAAATCTGTCTCTCTGAAGATGATAGCATTTTACTGCAGGATGTTATAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGTCTCTCTGAAGATGATAGCATTTTACTGCAGGATGTTATAT  943

seq1  TTTGCTAATTTATAGGGAGATTTATACAAAACACCTCCCTCCGTTTTTGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAATTTATAGGGAGATTTATACAAAACACCTCCCTCCGTTTTTGA  993

seq1  GATCTTGTGGCTGTTCTCTTCATGAACTCTTTCTTTGCATTGTTGTGTTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGTGGCTGTTCTCTTCATGAACTCTTTCTTTGCATTGTTGTGTTC  1043

seq1  ACACTGAAAACAATCCTGTGACAGAAATCTCTCTCTCTTATTAAAGACAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAACAATCCTGTGACAGAAATCTCTCTCTCTTATTAAAGACAA  1093

seq1  GGTCTTATTTCAAACTGAGAAAATAATTAGAAAGCCGACAGGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATTTCAAACTGAGAAAATAATTAGAAAGCCGACAGGAATTC  1140


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