BAC Information

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BAC

Clone NameB6Ng01-314K22
Chromosome8 (Build37)
Map Location 38,465,747 - 38,593,809
singlet/doubletdoublet
Overlap geneLOC621149, Sgcz
Upstream gene6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314K22.bB6Ng01-314K22.g
ACCGA105543GA105544
length1,1381,032
definitionB6Ng01-314K22.b B6Ng01-314K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,465,747 - 38,466,877)(38,592,765 - 38,593,809)
sequence
gaattcatatcatatatgaacttctcaagcaataaattaaaatatttgtt
cagaaatgaaacaaatctctaggtagaatctttcagaacaagagatatgg
tgcttgttagtgattcttccttctgaaatcaaatcaaacttcacttgtct
taaaaaaaagattattgctctctgggaaattttttatatcttatgattaa
tgaattttaaaataagccatataattatgtttatcttctcatgtgtactt
tgaaaactattttctgtttgttcaatcctctatgaggtcttcatagtaca
gaatatgtcaccaagccagtttcctttcctgccatgcttgagggctgcta
aggaattatgtaagtatttgcttttttacatatttcaatgcctaaatctg
ggagaatcattcaaggaaaatacattgaaagttcagtgacaattgctact
accatattttaagacactgcaaaaatatattagtgagagcatttaaggat
ctttccagataacttactgttccccatccttatgtaacaagttataagta
attctatattacgcctatctaattttgaaagtgacaaataaaatgcatat
aaatgttcaatgtaattgtagctctcaaccagttatcagtgttttccaga
tgcagaaggaacttagtaacacttgatgacatttgataaaatacttctca
cctttcaaaacacttctgcatgcataagtaattcagagtatgtgtaattt
gtagagttcatttgctaatagcctaaacaccttttaatttaatatatgtt
attttgataattaactctactggcccaaatttgtagcaaacaaatccatc
catttaatattgaaacataaacaaaggcttttaaaagaagagttaaccga
tgaatgtttctagatgttctggctggttttgtgtatcaacttgaaaggca
ttttctcagttagtgatcaatgggagagagtctagctcattgtggggtgg
ttccattccctgtgctagtagtcttagttcttataagaagagcagctgag
caagccaggggaagttaagggaaggtagagcattcctccatgggcctttc
tgcatcagatcctgcctcaaggctctaccttgtgtgag

gaattctctcattatattgatatgacttttgcacatagtaattaattttc
gctagtttatgcttcaattcctgttttgctctttgagagtaattggcatg
acaatagaatttgcagtaccaagatcaatgtaagagatgtttttctattg
tcctatcatttatagcatacctcctagaagtgcctgggaaatattatttt
gaaataatgaatagaatgcataattacagtgtccaacctattttgataag
ctgtcatgactagttaagtgtttcttacttcaaatctttgaaactctgtc
tagatctatttgttcaatactgtagtttgcagactctttgaaagcgtgaa
gaaactttagtgtaaatgcaacgtttgtcttaattatacccaaaatatag
aaaaacttatccctcttctggtttacctgagggacagtacccagaggata
taatagagaactgatttctctattcaattcaaggtacaagagacaatgag
tcactccagatagttaaatacttgcatctttgtgacatgcatacaataac
aaatactgaggtagataactcagataaactgtatctctatatgttcaaaa
tgtaattttcccattcccaaaagttgtaatttgaatggctctggatccat
atgtcaggttaatatgttattacatgatttccccccaaaaatgtttattt
ttatgtatttatttgtattcaggaaagtttatcaaaatgcttaagattgg
ctcaattttcatgtacctaagaaacacttgagaactgccaaccattatgt
tcaacattaaatcaaaatataagtaagaattcctaaaacttgtctaataa
attttattatatatactctttaaataaattttatttttgtaattagcttg
aaattatttgtgtacactacttgtttcacatgggcttgtattcagaacag
aatatgccactttatacacttgcatttttttacatatacattatctatca
atcctagcaagtacacatgagactatttaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38465747_38466877
seq2: B6Ng01-314K22.b_45_1182

seq1  GAATTCATATCATATATGAACTTCTCAAGCAATAAATTAAAATATTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCATATATGAACTTCTCAAGCAATAAATTAAAATATTTGTT  50

seq1  CAGAAATGAAACAAATCTCTAGGTAGAATCTTTCAGAACAAGAGATATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAAACAAATCTCTAGGTAGAATCTTTCAGAACAAGAGATATGG  100

seq1  TGCTTGTTAGTGATTCTTCCTTCTGAAATCAAATCAAACTTCACTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTAGTGATTCTTCCTTCTGAAATCAAATCAAACTTCACTTGTCT  150

seq1  TAAAAAAAAGATTATTGCTCTCTGGGAAATTTTTTATATCTTATGATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAGATTATTGCTCTCTGGGAAATTTTTTATATCTTATGATTAA  200

seq1  TGAATTTTAAAATAAGCCATATAATTATGTTTATCTTCTCATGTGTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTAAAATAAGCCATATAATTATGTTTATCTTCTCATGTGTACTT  250

seq1  TGAAAACTATTTTCTGTTTGTTCAATCCTCTATGAGGTCTTCATAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTATTTTCTGTTTGTTCAATCCTCTATGAGGTCTTCATAGTACA  300

seq1  GAATATGTCACCAAGCCAGTTTCCTTTCCTGCCATGCTTGAGGGCTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTCACCAAGCCAGTTTCCTTTCCTGCCATGCTTGAGGGCTGCTA  350

seq1  AGGAATTATGTAAGTATTTGCTTTTTTACATATTTCAATGCCTAAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTATGTAAGTATTTGCTTTTTTACATATTTCAATGCCTAAATCTG  400

seq1  GGAGAATCATTCAAGGAAAATACATTGAAAGTTCAGTGACAATTGCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCATTCAAGGAAAATACATTGAAAGTTCAGTGACAATTGCTACT  450

seq1  ACCATATTTTAAGACACTGCAAAAATATATTAGTGAGAGCATTTAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTTTAAGACACTGCAAAAATATATTAGTGAGAGCATTTAAGGAT  500

seq1  CTTTCCAGATAACTTACTGTTCCCCATCCTTATGTAACAAGTTATAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGATAACTTACTGTTCCCCATCCTTATGTAACAAGTTATAAGTA  550

seq1  ATTCTATATTACGCCTATCTAATTTTGAAAGTGACAAATAAAATGCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATATTACGCCTATCTAATTTTGAAAGTGACAAATAAAATGCATAT  600

seq1  AAATGTTCAATGTAATTGTAGCTCTCAACCAGTTATCAGTGTTTTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCAATGTAATTGTAGCTCTCAACCAGTTATCAGTGTTTTCCAGA  650

seq1  TGCAGAAGGAACTTAGTAACACTTGATGACATTTGATAAAATACTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGGAACTTAGTAACACTTGATGACATTTGATAAAATACTTCTCA  700

seq1  CCTTTCAAAACACTTCTGCATGCATAAGTAATTCAGAGTATGTGTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAAACACTTCTGCATGCATAAGTAATTCAGAGTATGTGTAATTT  750

seq1  GTAGAGTTCATTTGCTAATAGCCTAAACACCTTTTAATTTAATATATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTCATTTGCTAATAGCCTAAACACCTTTTAATTTAATATATGTT  800

seq1  ATTTTGATAATTAACTCTACTGGCCCAAATTTGTAGCAAACAAATCCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATAATTAACTCTACTGGCCCAAATTTGTAGCAAACAAATCCATC  850

seq1  CATTTAATATTGAAACATAAAC-AAGGCTTTTAAAAGAAGAGTTAACCGA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATTTAATATTGAAACATAAACAAAGGCTTTTAAAAGAAGAGTTAACCGA  900

seq1  TGAATGTTTCTAGATGTTCTGGCTGGTTTTGTGTATCAACTTG-AAGGCA  948
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAATGTTTCTAGATGTTCTGGCTGGTTTTGTGTATCAACTTGAAAGGCA  950

seq1  TTTTCTCAGTTAGTGATCAATGGGAGAGAGTCTAGCTCATTGT-GGGTGG  997
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTCTCAGTTAGTGATCAATGGGAGAGAGTCTAGCTCATTGTGGGGTGG  1000

seq1  TTCCATT-CCTGTGCTAGTAGTCTTAGGTTCTATAAG-AGAGCAAGCTGA  1045
      ||||||| ||||||||||||||||||| |  |||||| ||||| ||||||
seq2  TTCCATTCCCTGTGCTAGTAGTCTTAGTTCTTATAAGAAGAGC-AGCTGA  1049

seq1  GCAAGCCAGGGGAAGT--AAGGAAGTAAGGAGCATTCCTCCATGG---CT  1090
      ||||||||||||||||  | |||||  | ||||||||||||||||    |
seq2  GCAAGCCAGGGGAAGTTAAGGGAAGGTA-GAGCATTCCTCCATGGGCCTT  1098

seq1  TCTGCATCAGATCCTGCCTCCAAGCTCCTACCTTGTGTGAG  1131
      |||||||||||||||||||| | ||| ||||||||||||||
seq2  TCTGCATCAGATCCTGCCTCAAGGCT-CTACCTTGTGTGAG  1138


seq1: chr8_38592765_38593809
seq2: B6Ng01-314K22.g_65_1096 (reverse)

seq1  AATTAAATAAGTCTCAATTGTGTACTTTGCTAGGATTGATAGAATTAAAT  50
      |||||||| |||||||  ||||||| |||||||||||||||||    |||
seq2  AATTAAAT-AGTCTCA--TGTGTAC-TTGCTAGGATTGATAGA---TAAT  43

seq1  GTAATAATTGTAAAAAAATGCAAGTGTTATTAAAGTGGCATATTCTGTTC  100
      || |||  |||||||||||||||||||   ||||||||||||||||||||
seq2  GT-ATA--TGTAAAAAAATGCAAGTGT--ATAAAGTGGCATATTCTGTTC  88

seq1  TGAATAACAAG-CCATGTTGAAACAAGTAGTGTACACAAATAATTTCAAG  149
      ||||| ||||| ||||| ||||||||||||||||||||||||||||||||
seq2  TGAAT-ACAAGCCCATG-TGAAACAAGTAGTGTACACAAATAATTTCAAG  136

seq1  CTAATTACAAAAATAAAATTTATTTAAAGAGTATATATAATAAAATTTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTACAAAAATAAAATTTATTTAAAGAGTATATATAATAAAATTTAT  186

seq1  TAGACAAGTTTTAGGAATTCTTACTTATATTTTGATTTAATGTTGAACAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGTTTTAGGAATTCTTACTTATATTTTGATTTAATGTTGAACAT  236

seq1  AATGGTTGGCAGTTCTCAAGTGTTTCTTAGGTACATGAAAATTGAGCCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGGCAGTTCTCAAGTGTTTCTTAGGTACATGAAAATTGAGCCAA  286

seq1  TCTTAAGCATTTTGATAAACTTTCCTGAATACAAATAAATACATAAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCATTTTGATAAACTTTCCTGAATACAAATAAATACATAAAAAT  336

seq1  AAACATTTTTGGGGGGAAATCATGTAATAACATATTAACCTGACATATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTTGGGGGGAAATCATGTAATAACATATTAACCTGACATATGG  386

seq1  ATCCAGAGCCATTCAAATTACAACTTTTGGGAATGGGAAAATTACATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGCCATTCAAATTACAACTTTTGGGAATGGGAAAATTACATTTT  436

seq1  GAACATATAGAGATACAGTTTATCTGAGTTATCTACCTCAGTATTTGTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATAGAGATACAGTTTATCTGAGTTATCTACCTCAGTATTTGTTA  486

seq1  TTGTATGCATGTCACAAAGATGCAAGTATTTAACTATCTGGAGTGACTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGCATGTCACAAAGATGCAAGTATTTAACTATCTGGAGTGACTCA  536

seq1  TTGTCTCTTGTACCTTGAATTGAATAGAGAAATCAGTTCTCTATTATATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTTGTACCTTGAATTGAATAGAGAAATCAGTTCTCTATTATATC  586

seq1  CTCTGGGTACTGTCCCTCAGGTAAACCAGAAGAGGGATAAGTTTTTCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTACTGTCCCTCAGGTAAACCAGAAGAGGGATAAGTTTTTCTAT  636

seq1  ATTTTGGGTATAATTAAGACAAACGTTGCATTTACACTAAAGTTTCTTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGTATAATTAAGACAAACGTTGCATTTACACTAAAGTTTCTTCA  686

seq1  CGCTTTCAAAGAGTCTGCAAACTACAGTATTGAACAAATAGATCTAGACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCAAAGAGTCTGCAAACTACAGTATTGAACAAATAGATCTAGACA  736

seq1  GAGTTTCAAAGATTTGAAGTAAGAAACACTTAACTAGTCATGACAGCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCAAAGATTTGAAGTAAGAAACACTTAACTAGTCATGACAGCTTA  786

seq1  TCAAAATAGGTTGGACACTGTAATTATGCATTCTATTCATTATTTCAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAGGTTGGACACTGTAATTATGCATTCTATTCATTATTTCAAAA  836

seq1  TAATATTTCCCAGGCACTTCTAGGAGGTATGCTATAAATGATAGGACAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTCCCAGGCACTTCTAGGAGGTATGCTATAAATGATAGGACAAT  886

seq1  AGAAAAACATCTCTTACATTGATCTTGGTACTGCAAATTCTATTGTCATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACATCTCTTACATTGATCTTGGTACTGCAAATTCTATTGTCATG  936

seq1  CCAATTACTCTCAAAGAGCAAAACAGGAATTGAAGCATAAACTAGCGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTACTCTCAAAGAGCAAAACAGGAATTGAAGCATAAACTAGCGAAA  986

seq1  ATTAATTACTATGTGCAAAAGTCATATCAATATAATGAGAGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTACTATGTGCAAAAGTCATATCAATATAATGAGAGAATTC  1032


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