BAC Information

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BAC

Clone NameB6Ng01-314N10
Chromosome8 (Build37)
Map Location 113,339,755 - 113,466,963
singlet/doubletdoublet
Overlap geneSf3b3, Cog4, Fuk, St3gal2
Upstream geneAp1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
Downstream geneDdx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314N10.bB6Ng01-314N10.g
ACCGA105645GA105646
length1,1521,087
definitionB6Ng01-314N10.b B6Ng01-314N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,339,755 - 113,340,911)(113,465,869 - 113,466,963)
sequence
gaattcagtaagatctaagatccaagagaattgaaggtttgttctcacct
tgtgcagaaactccaacttctccccgttgttcacaagcttgtacgtatac
acaaagccccctgccacagatcgagggctcagtatcaagtccttggcaac
acccaccagcacataccaatcttcaccagtgttggagaacctacacactg
ccacactaaaaatagaccaagaaggcaaagtcaggcattagttaaaaccc
caagaaccctgctcacaccaccaaactcccgactgccctcaggtccttac
ctaaaggctgcctcgttttgctccaactggacaaggtctagtgtattccc
ctggatagggttcatcacccgaatcacagaggcccactgcccattgccag
ccttgggagctccaaaaatggattctgggaggttttcattgaggaatgct
gctgccatttctgcagccaactcccgctcatcctcccctgctgcttctac
catttcctaaacccaaaaagcaagaacagatgagatgagatgtgaaggag
caaagaagactgttgcctagcaccacggttccctcaaacagagattcgaa
aggaagggccttcaaacagccccactggtagaggcacttgtgacctgaca
ggtatttagcttcaacaaatggtgcagcaggtctgcactaaaacacttag
atacacaatttaaaagggggggaaaaagattcaagggagaaacgcaaaat
aaagagatcattaaaaggaaaaagaaatactagtagttatatctgagaaa
aaaaaaaaagccaaacagaacattaaccgtgacaaatattttcatgtcta
aaaactcagaaatgaaaacctggttgattcacatagtatctccaggcttc
ctatgggtttctgcatgcttgggtgctagttgggtttttgctggcaaata
atttttgggatgagctggtgctgaggggaaatctgaaagctgtgtgtcag
gcttgaatccaggcgtcatgtaacacaccctactgtgagctcaagacaga
aaaaacaagttctacacaggtactggaatcgagtacaaggtcagcatatt
ggtcccagttcacaaaaaagctgtaaagcagaatagaaccaggacaaaaa
ac
gaattcctagcctgtatccccacagccctggagagcatcctgaggcataa
gccctgcacataacccactagttgaccccacgccaggtcaatcagctctc
caaccctgagaacaatctcccccgggggaagcagtcttgcttcccagccc
ccagctctgaccaatcacaggcactgttaccccttggtgataggtacggg
cttccaggaacacagagatctcagaggcagatatgccttggtggaccctt
actcctacatagaacagaagccatatgctcactgtggggcagattgtcag
ctcttagcccagctgccacagagatcctacatagctcccccgagacccat
ctcacgcctgtagctctctagtcattaagtcaacagtaggattctaggaa
agccaggagggtttcccgtgaggtcatgaggagacatgaggagaaccaga
ggatgcatagaaactttaaagggaggagagagggagaaatcacataagac
aggacacaatcagagtatggcggtagactgaaggagagaaatccaaggct
ctcgggagggtttttagaagaagtagaaattaagctgaagaaatgctagc
ggaagaaaagccagacagaagcttgcgtggcccagacttgaggttttcat
ctgcaacctgagctttctcttcatttcttttcttttcttctttttttttt
ttttttttggtttttcgagacagggtttctctgtgtagccctgactgtcc
tggaactcactctatagaagaccaggctggccttgaactcagaaatccgc
ctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccacaccc
agcccacctgagctttctggacacctttcaatgagcagtaacacctggcc
acagcttcttcaagatgaagaaaccagggctggggagatggctcagcggt
taagagcactgactgctcttccagagtcctgagttcaaatccggcaacac
atgttgctcacacattctgtattggatcaaatgtccctctgtgtgactgg
agacaggtacacgtactccaatacatttaattaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113339755_113340911
seq2: B6Ng01-314N10.b_49_1200

seq1  GAATTCAGTAAGATCTAAGATCCAAGAGAATTGAAGGTTTGTTCTCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGATCTAAGATCCAAGAGAATTGAAGGTTTGTTCTCACCT  50

seq1  TGTGCAGAAACTCCAACTTCTCCCCGTTGTTCACAAGCTTGTACGTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAAACTCCAACTTCTCCCCGTTGTTCACAAGCTTGTACGTATAC  100

seq1  ACAAAGCCCCCTGCCACAGATCGAGGGCTCAGTATCAAGTCCTTGGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCCCCTGCCACAGATCGAGGGCTCAGTATCAAGTCCTTGGCAAC  150

seq1  ACCCACCAGCACATACCAATCTTCACCAGTGTTGGAGAACCTACACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCAGCACATACCAATCTTCACCAGTGTTGGAGAACCTACACACTG  200

seq1  CCACACTAAAAATAGACCAAGAAGGCAAAGTCAGGCATTAGTTAAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTAAAAATAGACCAAGAAGGCAAAGTCAGGCATTAGTTAAAACCC  250

seq1  CAAGAACCCTGCTCACACCACCAAACTCCCGACTGCCCTCAGGTCCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCCTGCTCACACCACCAAACTCCCGACTGCCCTCAGGTCCTTAC  300

seq1  CTAAAGGCTGCCTCGTTTTGCTCCAACTGGACAAGGTCTAGTGTATTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGCTGCCTCGTTTTGCTCCAACTGGACAAGGTCTAGTGTATTCCC  350

seq1  CTGGATAGGGTTCATCACCCGAATCACAGAGGCCCACTGCCCATTGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAGGGTTCATCACCCGAATCACAGAGGCCCACTGCCCATTGCCAG  400

seq1  CCTTGGGAGCTCCAAAAATGGATTCTGGGAGGTTTTCATTGAGGAATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAGCTCCAAAAATGGATTCTGGGAGGTTTTCATTGAGGAATGCT  450

seq1  GCTGCCATTTCTGCAGCCAACTCCCGCTCATCCTCCCCTGCTGCTTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATTTCTGCAGCCAACTCCCGCTCATCCTCCCCTGCTGCTTCTAC  500

seq1  CATTTCCTAAACCCAAAAAGCAAGAACAGATGAGATGAGATGTGAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAAACCCAAAAAGCAAGAACAGATGAGATGAGATGTGAAGGAG  550

seq1  CAAAGAAGACTGTTGCCTAGCACCACGGTTCCCTCAAACAGAGATTCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGACTGTTGCCTAGCACCACGGTTCCCTCAAACAGAGATTCGAA  600

seq1  AGGAAGGGCCTTCAAACAGCCCCACTGGTAGAGGCACTTGTGACCTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGCCTTCAAACAGCCCCACTGGTAGAGGCACTTGTGACCTGACA  650

seq1  GGTATTTAGCTTCAACAAATGGTGCAGCAGGTCTGCACTAAAACACTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTAGCTTCAACAAATGGTGCAGCAGGTCTGCACTAAAACACTTAG  700

seq1  ATACACAATTTAAAA-GGGGGGAAAAAGATTCAAGGGAGAAACGCAAAAT  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATACACAATTTAAAAGGGGGGGAAAAAGATTCAAGGGAGAAACGCAAAAT  750

seq1  AAAGAGATCATTAAAAGGAAAAAGAAATACTAGTAGTTATATCTGAG-AA  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAGATCATTAAAAGGAAAAAGAAATACTAGTAGTTATATCTGAGAAA  800

seq1  AAAAAAAAAGCCAAACAGAACATTAACCGTGACAAATATTTTCATGTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGCCAAACAGAACATTAACCGTGACAAATATTTTCATGTCTA  850

seq1  AAAACTCAGAAATGAAAACCTGGTTGATTCACATAGTATCTCCAGGCTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAGAAATGAAAACCTGGTTGATTCACATAGTATCTCCAGGCTTC  900

seq1  CTAT-GGTTTCTGCATGCTT-GGTGCTAGTT-GGTTTTTGCTGGCAAATA  945
      |||| ||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CTATGGGTTTCTGCATGCTTGGGTGCTAGTTGGGTTTTTGCTGGCAAATA  950

seq1  ATTTTT-GGATGAGCTGGTGCTGAGGGGAAATCTGAAAGCTGTGTGTCAG  994
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTTTTGGGATGAGCTGGTGCTGAGGGGAAATCTGAAAGCTGTGTGTCA-  999

seq1  GGCTTGAATCCAGGCGTCATGTAACACACCCTACTGTGGAGGCTCAAGGA  1044
      ||||||||||||||||||||||||||||||||||||||   |||||||  
seq2  GGCTTGAATCCAGGCGTCATGTAACACACCCTACTGTG--AGCTCAAGAC  1047

seq1  CCAGAAAAC-AGTTCTACACAGGGAACTGAATTCCGAGTAACCAAGGTCA  1093
        | ||||| ||||||||||||| |   ||||  ||||||  ||||||||
seq2  AGAAAAAACAAGTTCTACACAGGTACTGGAAT--CGAGTA--CAAGGTCA  1093

seq1  GCATATTTGTCCCAGGTCACAAAAAAAGCTTGTAAAAGGGAGAAATAGAA  1143
      ||||||| ||||||| |||| |||||||| ||||||  | || |||||||
seq2  GCATATTGGTCCCAGTTCAC-AAAAAAGC-TGTAAA--GCAG-AATAGAA  1138

seq1  ACAGGACAAAAAAC  1157
       |||||||||||||
seq2  CCAGGACAAAAAAC  1152

seq1: chr8_113465869_113466963
seq2: B6Ng01-314N10.g_66_1152 (reverse)

seq1  TATTT-ATTTAATGTATGTGAGTACGTTGTAACTGTCTTCAGTCACACCA  49
      ||||| ||| |||||||  ||||||| |||| |||||| |||||||| ||
seq2  TATTTAATTAAATGTATTGGAGTACG-TGTACCTGTCTCCAGTCACA-CA  48

seq1  GAAGGGGACATTTGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTT  99
      ||  |||||||||||| ||| ||||||  | |||||| || ||||| |||
seq2  GA--GGGACATTTGAT-CCAATACAGAATG-TGTGAG-CAACATGT-GTT  92

seq1  GCCGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACC  149
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCC-GGATTTGAACTCAGGA-CTCTGGAAGAGCAGTCAGTGCTCTTAACC  140

seq1  GCTGAGCCATCTCCCCAGCCCTGGTTTCTTCATCTTGAAGAAGCTGTGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCATCTCCCCAGCCCTGGTTTCTTCATCTTGAAGAAGCTGTGGC  190

seq1  CAGGTGTTACTGCTCATTG-AAGGTGTCCAGAAAGCTCAGGTGGGCTGGG  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGGTGTTACTGCTCATTGAAAGGTGTCCAGAAAGCTCAGGTGGGCTGGG  240

seq1  TGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCG  290

seq1  GATTTCTGAGTTCAAGGCCAGCCTGGTCTTCTATAGAGTGAGTTCCAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCAAGGCCAGCCTGGTCTTCTATAGAGTGAGTTCCAGGA  340

seq1  CAGTCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAA  390

seq1  AAAAAAAGAAGAAAAGAAAAGAAATGAAGAGAAAGCTCAGGTTGCAGATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAGAAAAGAAAAGAAATGAAGAGAAAGCTCAGGTTGCAGATG  440

seq1  AAAACCTCAAGTCTGGGCCACGCAAGCTTCTGTCTGGCTTTTCTTCCGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCAAGTCTGGGCCACGCAAGCTTCTGTCTGGCTTTTCTTCCGCT  490

seq1  AGCATTTCTTCAGCTTAATTTCTACTTCTTCTAAAAACCCTCCCGAGAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCTTCAGCTTAATTTCTACTTCTTCTAAAAACCCTCCCGAGAGC  540

seq1  CTTGGATTTCTCTCCTTCAGTCTACCGCCATACTCTGATTGTGTCCTGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTTCTCTCCTTCAGTCTACCGCCATACTCTGATTGTGTCCTGTC  590

seq1  TTATGTGATTTCTCCCTCTCTCCTCCCTTTAAAGTTTCTATGCATCCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGATTTCTCCCTCTCTCCTCCCTTTAAAGTTTCTATGCATCCTCT  640

seq1  GGTTCTCCTCATGTCTCCTCATGACCTCACGGGAAACCCTCCTGGCTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCCTCATGTCTCCTCATGACCTCACGGGAAACCCTCCTGGCTTTC  690

seq1  CTAGAATCCTACTGTTGACTTAATGACTAGAGAGCTACAGGCGTGAGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCCTACTGTTGACTTAATGACTAGAGAGCTACAGGCGTGAGATG  740

seq1  GGTCTCGGGGGAGCTATGTAGGATCTCTGTGGCAGCTGGGCTAAGAGCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCGGGGGAGCTATGTAGGATCTCTGTGGCAGCTGGGCTAAGAGCTG  790

seq1  ACAATCTGCCCCACAGTGAGCATATGGCTTCTGTTCTATGTAGGAGTAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTGCCCCACAGTGAGCATATGGCTTCTGTTCTATGTAGGAGTAAG  840

seq1  GGTCCACCAAGGCATATCTGCCTCTGAGATCTCTGTGTTCCTGGAAGCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACCAAGGCATATCTGCCTCTGAGATCTCTGTGTTCCTGGAAGCCC  890

seq1  GTACCTATCACCAAGGGGTAACAGTGCCTGTGATTGGTCAGAGCTGGGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTATCACCAAGGGGTAACAGTGCCTGTGATTGGTCAGAGCTGGGGG  940

seq1  CTGGGAAGCAAGACTGCTTCCCCCGGGGGAGATTGTTCTCAGGGTTGGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGCAAGACTGCTTCCCCCGGGGGAGATTGTTCTCAGGGTTGGAG  990

seq1  AGCTGATTGACCTGGCGTGGGGTCAACTAGTGGGTTATGTGCAGGGCTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTGACCTGGCGTGGGGTCAACTAGTGGGTTATGTGCAGGGCTTA  1040

seq1  TGCCTCAGGATGCTCTCCAGGGCTGTGGGGATACAGGCTAGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGGATGCTCTCCAGGGCTGTGGGGATACAGGCTAGGAATTC  1087