BAC Information

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BAC

Clone NameB6Ng01-315C10
Chromosome8 (Build37)
Map Location 86,990,179 - 86,991,313
singlet/doubletsinglet
Overlap geneCacna1a
Upstream geneLOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315C10.bB6Ng01-315C10.g
ACCGA105876GA105877
length1,2051,151
definitionB6Ng01-315C10.b B6Ng01-315C10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacagttctgtagtctttggttttttcaaaacctactttaaataa
tggttctcaaatgctttaacctcccttctagcccaccaaccaccagagat
agtggaaaagaaaggttattaggatatggggacgtaaacctctttggagc
aaatccaatctgcattgtctggatatcagcagttcggttcacacagatca
gcagtagcagctccatccactggcaaacaccattcatgaatcagcaacag
gtcaattcagaagaagcttcgaggctctgctgtaccctgttagacggtgt
tccttaggggtgatttcagtgtccaattgtcaggataccagcagtccatt
tcagtagtgtcaggagagcaaacaccaatcagcagcagtggcttctgctg
gatcagcatgagtcatcagagatgaccaggagcagcagggacaccaggag
aagttctctgccatgactctctcaacaaggtgaaaatcagtgaagacaag
acttgagaacaacaaagtgttgcaaaacacgctgtcactgtccattgagt
cctatttatactccctccagacatcacctgttgtctcttgggtcttgtct
cagcaaaataccatgtgagtctatattagcaaaactccactagagtctat
atcagctgacatatccagaaacttctactttgctctgccaataggcctga
gttcacagaagcagcaagaagctgccagaacaccaccagaaggttttttt
ggtgcatttctttctatgaagtcacagcaaatgatgactagtaaggaatg
gcaaggcttatcaataccatcagcattgtccaccatctgttgggttatat
ttatactccttaacatcatgtatccttttcacatgtttgctttagcaaaa
catccttttcactgtgtctgcttcagtgaaacgttcctttcattgtgtct
gctttagcaaaaacatcaaagaaactcagaagttttccacttcacagttc
cttctcaagcaccatatctgcttagatgcttcatgcttcccaccatgatg
aatatggactgaatcttctgaacttgttaaggcagcctatttaaatgttt
ttcttttataaagagttgcctttgaccatgctgatctctttccaagcaat
agaatcccttatgcattggactgctattcaccaaaaaggaaactttctca
actga
gaattctctttctttcccttttttcattcacatttcttaaatgtccatcc
tgcatgtttttgttttaatcctcagaatttcaataaatgcccccaaagcc
aacaaatctatggttaagatacttcccaccaaacctcacacaagacaaag
gcaaaaagccctgactgtccacaagacccagttgctgactgaacactgca
ggcctctcaggaatggaagacagccagctaatcagcaaaagctcattaaa
gccaccacttgtctcagtgcccaatccatccccaagtccctctctctcca
aggcagaatttagcactgaatcaccactgctgacagggtagagggctggc
tctgcggggtttctcctgcacagctcagcagacagagccccagcaagacc
cagggatgggatgggagcactggacctgagttaagaaaagttaccagaca
acaaggaagcatgctgatcagataaacaagcaagaaaaatagggaggtgg
gctgtacagatgggaaagaaaatgagaacgaggcaggtacagggagtagg
aggagaagcatctgaggctgggcagtagggaggtccccaaatcagaaaga
aatacagattagcaaaacatgtgcacacacacatgctcacagagtcaaag
actacagaccaaagatgcattcacccacactgttcaccacacataaacca
cacaccctacacataaacatgtataaacacacacgcacatcacacataca
aacacatgtatacatacacatatacatacagaccacacaaacacacacac
aaatacaaacaacatatatacacagatacacacagacacaaatcaccctg
tggcaaaattgggagtggataacaacactcatctggtacggatgtggaga
accaaacacaagtcccctgtagacagcaagtgcttttaaccaccaagcat
ctcccccagtccctgctatacattttttattaacaacacctggaccactg
ggttgtttaaaagaatgagtttccttagcaacagaaacggaaaagttatt
cttgaattcctatgttcaagtatcaagaagcctgccaaggaccaagccca
acaagccttaacatggaagaaaacagctgccttccgcaagtctagaactc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86990179_86991313
seq2: B6Ng01-315C10.g_68_1218 (reverse)

seq1  AGAGTTCTTGGGTTTGCGGAGGGCAAGCTG--TTCTT-CATGTTAAGGCT  47
      ||||||| | |  ||||||| ||| |||||  ||||| ||||||||||||
seq2  AGAGTTC-TAGACTTGCGGAAGGC-AGCTGTTTTCTTCCATGTTAAGGCT  48

seq1  TGT--GGCTTGGGCCCTTGGCAGGC-TCTTGATACTTG-ACATA-GAAT-  91
      |||  ||||| || ||||||||||| |||||||||||| ||||| |||| 
seq2  TGTTGGGCTT-GGTCCTTGGCAGGCTTCTTGATACTTGAACATAGGAATT  97

seq1  -CAGA--TACTTTTCC-CTTCTGTTGCT-AGGAAACTCAT--CTTTAAAC  134
        |||   ||||||||  |||||||||| |||||||||||   |||||||
seq2  CAAGAATAACTTTTCCGTTTCTGTTGCTAAGGAAACTCATTCTTTTAAAC  147

seq1  AACCCAGTGGTCCAGGTG-TGTTAAT-AAAAATGTATAGCAGGGACT-GG  181
      |||||||||||||||||| ||||||| |||||||||||||||||||| ||
seq2  AACCCAGTGGTCCAGGTGTTGTTAATAAAAAATGTATAGCAGGGACTGGG  197

seq1  GGAGATGCTTGGTGGTTAAAAGCACTTGCTGTCTACAGGGGACTTGTGTT  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCTTGGTGGTTAAAAGCACTTGCTGTCTACAGGGGACTTGTGTT  247

seq1  TGGTTCTCCACATCCGTACCAGATGAGTGTTGTTATCCACTCCCAATTTT  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCCACATCCGTACCAGATGAGTGTTGTTATCCACTCCCAATTTT  297

seq1  GCCACAGGGTGATTTGTGTCTGTGTGTATCTGTGTATATATGTTGTTTGT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGGTGATTTGTGTCTGTGTGTATCTGTGTATATATGTTGTTTGT  347

seq1  ATTTGTGTGTGTGTTTGTGTGGTCTGTATGTATATGTGTATGTATACATG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGTGTGTTTGTGTGGTCTGTATGTATATGTGTATGTATACATG  397

seq1  TGTTTGTATGTGTGATGTGCGTGTGTGTTTATACATGTTTATGTGTAGGG  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATGTGTGATGTGCGTGTGTGTTTATACATGTTTATGTGTAGGG  447

seq1  TGTGTGGTTTATGTGTGGTGAACAGTGTGGGTGAATGCATCTTTGGTCTG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTTTATGTGTGGTGAACAGTGTGGGTGAATGCATCTTTGGTCTG  497

seq1  TAGTCTTTGACTCTGTGAGCATGTGTGTGTGCACATGTTTTGCTAATCTG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTGACTCTGTGAGCATGTGTGTGTGCACATGTTTTGCTAATCTG  547

seq1  TATTTCTTTCTGATTTGGGGACCTCCCTACTGCCCAGCCTCAGATGCTTC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTCTGATTTGGGGACCTCCCTACTGCCCAGCCTCAGATGCTTC  597

seq1  TCCTCCTACTCCCTGTACCTGCCTCGTTCTCATTTTCTTTCCCATCTGTA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTACTCCCTGTACCTGCCTCGTTCTCATTTTCTTTCCCATCTGTA  647

seq1  CAGCCCACCTCCCTATTTTTCTTGCTTGTTTATCTGATCAGCATGCTTCC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCACCTCCCTATTTTTCTTGCTTGTTTATCTGATCAGCATGCTTCC  697

seq1  TTGTTGTCTGGTAACTTTTCTTAACTCAGGTCCAGTGCTCCCATCCCATC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCTGGTAACTTTTCTTAACTCAGGTCCAGTGCTCCCATCCCATC  747

seq1  CCTGGGTCTTGCTGGGGCTCTGTCTGCTGAGCTGTGCAGGAGAAACCCCG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCTTGCTGGGGCTCTGTCTGCTGAGCTGTGCAGGAGAAACCCCG  797

seq1  CAGAGCCAGCCCTCTACCCTGTCAGCAGTGGTGATTCAGTGCTAAATTCT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGCCCTCTACCCTGTCAGCAGTGGTGATTCAGTGCTAAATTCT  847

seq1  GCCTTGGAGAGAGAGGGACTTGGGGATGGATTGGGCACTGAGACAAGTGG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAGAGAGAGGGACTTGGGGATGGATTGGGCACTGAGACAAGTGG  897

seq1  TGGCTTTAATGAGCTTTTGCTGATTAGCTGGCTGTCTTCCATTCCTGAGA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAATGAGCTTTTGCTGATTAGCTGGCTGTCTTCCATTCCTGAGA  947

seq1  GGCCTGCAGTGTTCAGTCAGCAACTGGGTCTTGTGGACAGTCAGGGCTTT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCAGTGTTCAGTCAGCAACTGGGTCTTGTGGACAGTCAGGGCTTT  997

seq1  TTGCCTTTGTCTTGTGTGAGGTTTGGTGGGAAGTATCTTAACCATAGATT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTGTCTTGTGTGAGGTTTGGTGGGAAGTATCTTAACCATAGATT  1047

seq1  TGTTGGCTTTGGGGGCATTTATTGAAATTCTGAGGATTAAAACAAAAACA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTTTGGGGGCATTTATTGAAATTCTGAGGATTAAAACAAAAACA  1097

seq1  TGCAGGATGGACATTTAAGAAATGTGAATGAAAAAAGGGAAAGAAAGAGA  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATGGACATTTAAGAAATGTGAATGAAAAAAGGGAAAGAAAGAGA  1147

seq1  ATTC  1135
      ||||
seq2  ATTC  1151