BAC Information

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BAC

Clone NameB6Ng01-315O04
Chromosome8 (Build37)
Map Location 109,670,332 - 109,802,725
singlet/doubletdoublet
Overlap geneCyb5b, LOC100042791
Upstream geneLypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
Downstream geneNfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315O04.bB6Ng01-315O04.g
ACCGA106417GA106418
length1,1241,117
definitionB6Ng01-315O04.b B6Ng01-315O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,801,613 - 109,802,725)(109,670,332 - 109,671,462)
sequence
gaattctacatcttgttctggaggcaaacaagactggtttccaggcagct
aggaggagggtcccaacaaggccacacctactccaacaaggccacacctc
ctaatagtgcctctcccaggaccaagcatagtcaaaccaccacagaggcc
ctgtctcaaaaacaaacaatgatgagaaaccaccctgctttgtaaatacc
actggaacaaacatctttgcagctaagtctgtatttatagtcttttaaaa
gtcacttctttggctgaactgtatgacttcaaggccagcctggtttacat
agtgagttccaggacagccagagctatacaatgaaaccctatctcaaaac
aaacaaacaaacaaacaaacaaacaaacattactgcctgtaatctacata
cactccctttatattcattcctcagtaaggtttactttgatgatcagtag
agaggtgtgagtttgaggccagcttgagattcatgagaaacctacatcaa
agtaaatgtttattattattttgataataatatcaaaattattattatcc
agaggtagaacactttcttagcatgtatagggctctgggttcaatcctag
tatcacacacacacacacacacacacacacacacacacacacacacacac
acacacacaaaggaaatgggaaaggtaggcttaatggcttaagcttagtg
gttcctgcctattatcccagcaattataaggcagagaaaagaaggtctgt
acaagtttgaagccagtctgatcgacaaggcaagttctaggccattcagg
gatgcatagggagacccaagctcaggagaacagcacatgcagcaataggg
ggatggagcaagctcacaatagagctttgctgctgtttggacctaaaatg
cattaggcttggcaggttccgaggcttactcagcagaactccagtgttaa
aaatgtcattttccatagcatgacacctggaaattggagttctcacaaga
acattgtgaaaatgctgatgctaaaacttaaaaaaaaaaaaaaattccca
cgaccacagaacttcatgctagattgctatcctacttcttcggtagctgg
actcagaactagcacggagatgcc
gaattccatgcactgagaagaaaaagactgaagccttcccacaggcaata
gggaaaacttgtgtgctggcttgttgtatgtcaatttgacagaagtcatc
tgggaggagggagcctcaattgagaaaatgcctctgtaagactggctttg
ggcaaacctgtagagcactttctttttcttttttctttttctttttttta
aagatttatttatttattatataagtacactgtagctgtcttcagacaca
ccagaagagggtattagatctcattacagatggttatgagccaccatgtg
gttgctggaaattgaatgcaggacctctggaagagctcttaaccactgag
ccgtctttccagcccccgagcattttcttaattagaggttgatgggggag
agcccggcctactgtagatggtaccagtcctgagctaatggtcctggatt
ctgtagaaaagcaggcaggacaagctatgaggaggaagccaataagcagc
acccctccatggcctctgcatcagcttcaggcgtgcaccatcactgcctg
gattacttttctaatgttctttaccagtcaaagctaggtcatgactctct
gggttgaaaggctcctctccaaaaaaacccccaaaagctcatccctgaag
ggcaattttgcatcagctcctgtccagcaccccactcactgccttttttt
ctaacagaaggagaatgcatcccattgcccacctgggatgcatttcttta
gtctttgcttcttactctttcccggggaaccgattgggctttgccacgga
gactttctgtttgaattctactttttatacaaaaatcaataaaatagtct
tgcaaaataaataatgattctcgtggggcaggatctcacatgatacatgc
tctgaaataaattacagagcatgcgtgtcagacccggcagatggcgtgag
gagtgggttcagatctctgtgactaacggcccggggagaggattgcctac
tacataacagtacagtactaaaatatgatgttcaagtgtttcaatggttc
tgtcttcttcgatgtcactttagagtggaccctctataatgtctaagaag
tataacctccatagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109801613_109802725
seq2: B6Ng01-315O04.b_48_1171 (reverse)

seq1  GGCATCT-CGTGCT-GGTCTGAGT-CAGCTACCG-AGAGGTAGGATAGC-  45
      ||||||| |||||| | ||||||| ||||||||| ||| |||||||||| 
seq2  GGCATCTCCGTGCTAGTTCTGAGTCCAGCTACCGAAGAAGTAGGATAGCA  50

seq1  ATCTAAGCATGAAGTTCTGT-GTCGTGTGAA--TTTTTTTTTTTTTAAGT  92
      |||| ||||||||||||||| |||||| |||  |||||||||||||||||
seq2  ATCT-AGCATGAAGTTCTGTGGTCGTGGGAATTTTTTTTTTTTTTTAAGT  99

seq1  TTTAGCATCAGCATTTTCACAATGTTCTGTGGAGAACTCCAATTTCCAGG  142
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  TTTAGCATCAGCATTTTCACAATGTTCTTGTGAGAACTCCAATTTCCAGG  149

seq1  TGTCATGCTATGG-AAATGACATTTTTAACACTGG-GTTCTGCTGAGTAA  190
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TGTCATGCTATGGAAAATGACATTTTTAACACTGGAGTTCTGCTGAGTAA  199

seq1  GCCTCGGAACCTG-CAAGCCTAATGCATTTTAGGTCCAAACAGCAGCAAA  239
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGAACCTGCCAAGCCTAATGCATTTTAGGTCCAAACAGCAGCAAA  249

seq1  GCTCTATTGTGAGCTTGCTCCAT-CCCCTATTGCTGCATGTGCTGTTCTC  288
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTCTATTGTGAGCTTGCTCCATCCCCCTATTGCTGCATGTGCTGTTCTC  299

seq1  CTGAGCTTGGGTCTCCCTATGCATCCCTGAATGGCCTAGAACTTGCCTTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTGGGTCTCCCTATGCATCCCTGAATGGCCTAGAACTTGCCTTG  349

seq1  TCGATCAGACTGGCTTCAAACTTGTACAGACCTTCTTTTCTCTGCCTTAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCAGACTGGCTTCAAACTTGTACAGACCTTCTTTTCTCTGCCTTAT  399

seq1  AATTGCTGGGATAATAGGCAGGAACCACTAAGCTTAAGCCATTAAGCCTA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGGGATAATAGGCAGGAACCACTAAGCTTAAGCCATTAAGCCTA  449

seq1  CCTTTCCCATTTCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCATTTCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  499

seq1  TGTGTGTGTGTGTGTGTGTGTGATACTAGGATTGAACCCAGAGCCCTATA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGATACTAGGATTGAACCCAGAGCCCTATA  549

seq1  CATGCTAAGAAAGTGTTCTACCTCTGGATAATAATAATTTTGATATTATT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAAGAAAGTGTTCTACCTCTGGATAATAATAATTTTGATATTATT  599

seq1  ATCAAAATAATAATAAACATTTACTTTGATGTAGGTTTCTCATGAATCTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATAATAATAAACATTTACTTTGATGTAGGTTTCTCATGAATCTC  649

seq1  AAGCTGGCCTCAAACTCACACCTCTCTACTGATCATCAAAGTAAACCTTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCCTCAAACTCACACCTCTCTACTGATCATCAAAGTAAACCTTA  699

seq1  CTGAGGAATGAATATAAAGGGAGTGTATGTAGATTACAGGCAGTAATGTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATGAATATAAAGGGAGTGTATGTAGATTACAGGCAGTAATGTT  749

seq1  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGATAGGGTTTCATTGTAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGATAGGGTTTCATTGTAT  799

seq1  AGCTCTGGCTGTCCTGGAACTCACTATGTAAACCAGGCTGGCCTTGAAGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGCTGTCCTGGAACTCACTATGTAAACCAGGCTGGCCTTGAAGT  849

seq1  CATACAGTTCAGCCAAAGAAGTGACTTTTAAAAGACTATAAATACAGACT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTTCAGCCAAAGAAGTGACTTTTAAAAGACTATAAATACAGACT  899

seq1  TAGCTGCAAAGATGTTTGTTCCAGTGGTATTTACAAAGCAGGGTGGTTTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCAAAGATGTTTGTTCCAGTGGTATTTACAAAGCAGGGTGGTTTC  949

seq1  TCATCATTGTTTGTTTTTGAGACAGGGCCTCTGTGGTGGTTTGACTATGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTGTTTGTTTTTGAGACAGGGCCTCTGTGGTGGTTTGACTATGC  999

seq1  TTGGTCCTGGGAGAGGCACTATTAGGAGGTGTGGCCTTGTTGGAGTAGGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGGGAGAGGCACTATTAGGAGGTGTGGCCTTGTTGGAGTAGGT  1049

seq1  GTGGCCTTGTTGGGACCCTCCTCCTAGCTGCCTGGAAACCAGTCTTGTTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTGTTGGGACCCTCCTCCTAGCTGCCTGGAAACCAGTCTTGTTT  1099

seq1  GCCTCCAGAACAAGATGTAGAATTC  1113
      |||||||||||||||||||||||||
seq2  GCCTCCAGAACAAGATGTAGAATTC  1124

seq1: chr8_109670332_109671462
seq2: B6Ng01-315O04.g_65_1181

seq1  GAATTCCATGCACTGAGAAGAAAAAGACTGAAGCCTTCCCACAGGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCACTGAGAAGAAAAAGACTGAAGCCTTCCCACAGGCAATA  50

seq1  GGGAAAACTTGTGTGCTGGCTTGTTGTATGTCAATTTGACAGAAGTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACTTGTGTGCTGGCTTGTTGTATGTCAATTTGACAGAAGTCATC  100

seq1  TGGGAGGAGGGAGCCTCAATTGAGAAAATGCCTCTGTAAGACTGGCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGGGAGCCTCAATTGAGAAAATGCCTCTGTAAGACTGGCTTTG  150

seq1  GGCAAACCTGTAGAGCACTTTCTTTTTCTTTTTTCTTTTTCTTTTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACCTGTAGAGCACTTTCTTTTTCTTTTTTCTTTTTCTTTTTTTTA  200

seq1  AAGATTTATTTATTTATTATATAAGTACACTGTAGCTGTCTTCAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTATTTATTATATAAGTACACTGTAGCTGTCTTCAGACACA  250

seq1  CCAGAAGAGGGTATTAGATCTCATTACAGATGGTTATGAGCCACCATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGTATTAGATCTCATTACAGATGGTTATGAGCCACCATGTG  300

seq1  GTTGCTGGAAATTGAATGCAGGACCTCTGGAAGAGCTCTTAACCACTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGAAATTGAATGCAGGACCTCTGGAAGAGCTCTTAACCACTGAG  350

seq1  CCGTCTTTCCAGCCCCCGAGCATTTTCTTAATTAGAGGTTGATGGGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTTTCCAGCCCCCGAGCATTTTCTTAATTAGAGGTTGATGGGGGAG  400

seq1  AGCCCGGCCTACTGTAGATGGTACCAGTCCTGAGCTAATGGTCCTGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGGCCTACTGTAGATGGTACCAGTCCTGAGCTAATGGTCCTGGATT  450

seq1  CTGTAGAAAAGCAGGCAGGACAAGCTATGAGGAGGAAGCCAATAAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAAAGCAGGCAGGACAAGCTATGAGGAGGAAGCCAATAAGCAGC  500

seq1  ACCCCTCCATGGCCTCTGCATCAGCTTCAGGCGTGCACCATCACTGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCCATGGCCTCTGCATCAGCTTCAGGCGTGCACCATCACTGCCTG  550

seq1  GATTACTTTTCTAATGTTCTTTACCAGTCAAAGCTAGGTCATGACTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTTTCTAATGTTCTTTACCAGTCAAAGCTAGGTCATGACTCTCT  600

seq1  GGGTTGAAAGGCTCCTCTCCAAAAAAACCCCCAAAAGCTCATCCCTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAAAGGCTCCTCTCCAAAAAAACCCCCAAAAGCTCATCCCTGAAG  650

seq1  GGCAATTTTGCATCAGCTCCTGTCCAGCACCCCACTCACTGCCTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTTTGCATCAGCTCCTGTCCAGCACCCCACTCACTGCCTTTTTTT  700

seq1  CTAACAGAAGGAGAATGCATCCCATTGCCCACCTGGGATGCATTTCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGAAGGAGAATGCATCCCATTGCCCACCTGGGATGCATTTCTTTA  750

seq1  GTCTTTGCTTCTTACTCTTTCCCGGGGAACCGATTGGGCTTTGCCACGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCTTCTTACTCTTTCCCGGGGAACCGATTGGGCTTTGCCACGGA  800

seq1  GACTTTCTGTTTGAATTCTACTTTTTATACAAAAATCAATAAAATAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGTTTGAATTCTACTTTTTATACAAAAATCAATAAAATAGTCT  850

seq1  TGCAAAATAAATAATGATTCTCGTGGGGCAGGATCTCACATGATACATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATAAATAATGATTCTCGTGGGGCAGGATCTCACATGATACATGC  900

seq1  TCTGAAATAAATTACAGAGCATGCGTGTCAGGACCCGGCAGATGGCGTGG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TCTGAAATAAATTACAGAGCATGCGTGTCA-GACCCGGCAGATGGCGTG-  948

seq1  AGGGAGTGGGTTCAGATCTCTGTGACTTAACGGCCCGGGGAGAGGATTGC  1000
        |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -AGGAGTGGGTTCAGATCTCTGTGAC-TAACGGCCCGGGGAGAGGATTGC  996

seq1  CTACTACATAACAGTAACAGTACTAAAATATTGATGTTCAAAGTGTTTCA  1050
      ||||||||||||||| |||||||||||||| |||||||| ||||||||| 
seq2  CTACTACATAACAGT-ACAGTACTAAAATA-TGATGTTC-AAGTGTTTC-  1042

seq1  AATGGTTCTGTCTTCCTCCGAATGTCACTTAAGAAGTGGACCCCTCTTAT  1100
      ||||||||||||||| ||   ||||||||| || |||||| ||||| |||
seq2  AATGGTTCTGTCTTCTTC--GATGTCACTTTAG-AGTGGA-CCCTC-TAT  1087

seq1  AATGTCTAGAAAGTATAACCTCCCATAGAAT  1131
      ||||||||  ||||||||||| |||||||||
seq2  AATGTCTAAGAAGTATAACCT-CCATAGAAT  1117