BAC Information

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BAC

Clone NameB6Ng01-316A04
Chromosome8 (Build37)
Map Location 39,085,498 - 39,235,293
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
Downstream geneTusc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316A04.bB6Ng01-316A04.g
ACCGA106512GA106513
length1,1331,111
definitionB6Ng01-316A04.b B6Ng01-316A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,234,155 - 39,235,293)(39,085,498 - 39,086,615)
sequence
gaattcagttaccaaatcattaatttgaattggccttatattaatgtaca
ttttgcaaaaattcttagggcctgtacaaaagttttttttctagatttca
gtgtatgtgaaagcttgactaaagttgtatacctaaaaatatcatctgtc
catgtgctttgaacattaaatcttatgtctgatgagcatttttttatttt
attttttacagtccagtcattactccctcccacattctccatcccattcc
tcctccccactgtctccaagaggatatccccatgaccccacctccaccag
acctcaccactccatgtggtctcaagtctctcaagggttaggtgcatctt
ccctcactgagactagagcaggtattgggggtagtattagcagagaagcc
ctgaggactagtagaataaatggatgtgtgcaacctcaggaggtgggaaa
tgggggaatcttctagaatgtatcagagacctgggagatggaattttctt
aggacacaaaaggaggggccttagatgaaatgcccaacagtggggagaga
acaattgtagagtctacctccagtagaaagacatggcatcaagtgtaggg
atgtggttgctatcccgcaatcaaacactttcacccaaaattattcctgt
ataaaaggaatgaagggacaaaaataaagaagagaatgagggaaaggagg
tgcagtgactggcccaacttggtatccatttaggggaggcttcaaggcct
gacaatattattgatggggtgatgtgcttacatatgggagcctagcatga
ctgtcctctgagaggctcaacaagcagttaactgagacagctgcagatac
ttacatgcaaccaatggattgaagaccaggacccctgtcattgaattagg
aaaaggctggaagaagctgaggagggcaaccacatagggaccagcagtct
caactaacccagacccctaagatctctcagatactaagcaactaaccagg
cagcataacctggctagctgaggccccaaacatatataagcagaagtata
tgagcttttatcatattgcatattatatcatacttacttttatggtctcg
tttgtaaggttttctttttcttaaaaattaatc

gaattcatagaggtttgattttagatcaagaactatttaaattatgagaa
aaaacaaccaagaattacagaattatatgatatagcattcttctatttct
ttatgttttttgagataaagtatttgataaaacatagttcctaagcaggt
aagaccatagtaaaatagtctatgtgacagtgctaggatattctttgagg
aagaaataatactgtcatatgattactgataaaaatgtacactaggaagc
aagaaggctcttactgaattcattataaatggttgtaacttgttttaaaa
ttctaaatattagataaatttttaaaagacatcactttttataccacttt
ccagacttgagaactgaaatataagcaggcaatgccctagatagctgcct
tctttcctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttttttct
ttctttctcctcctcctccacctccctcttcttcctctcctccacttttt
ttcttttaattttattctttttctttcacttaaaactttacacatctatt
caatatctttaatatcacagatgaaagaatgtatgaaaactaaaagggga
ctggctaacctggtacctttgaggtcagaattttctctggtaacaacctt
aaagaatatcacagttatgactctcatcagaactctattcggtcaccctg
accttatccatgtatacaaaatcagatgaatacatcagaatgcaatataa
caatacttatctaatacaaaaatgttataaatttattccaagcttgagat
gccaattaagtaacttcaaagcaatattcataataccttagttttcacca
aaacataattaataaaggtaaagcatataaattagtaattgaatgttttt
gtaatcaaacagtgttcctgtggaattccttaacagtcgagtagaggctg
cctcttgactattttgcctgtttgggatccctttcctctacttagtacta
gtatgccttgatgtgatagcttgtatctgtcttatgtctgttcagctaat
gaatgatgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39234155_39235293
seq2: B6Ng01-316A04.b_45_1177 (reverse)

seq1  GATTAATTTTAAGAAAAAAGAAAAACATTACAAACGAGACCATAAAAGTA  50
      |||||||||| |  |||||| ||||| |||||||||||||||||||||||
seq2  GATTAATTTTTAAGAAAAAG-AAAACCTTACAAACGAGACCATAAAAGTA  49

seq1  AGTTATGATATAATAATGCAATATGAATAAAAGCTCATTATACCTCTGCT  100
      || ||||||||||| |||||||||| ||||||||||| ||||| ||||||
seq2  AG-TATGATATAAT-ATGCAATATG-ATAAAAGCTCA-TATACTTCTGCT  95

seq1  TATATATGTTTGGGGCCTCAGCCTAGCCAGGTTATGCTGCCTGGTTGGTG  150
      ||||||||||||||||||||| |||||||||||||||||||||||| || 
seq2  TATATATGTTTGGGGCCTCAG-CTAGCCAGGTTATGCTGCCTGGTTAGTT  144

seq1  GCTTAGTATCTGAGAGATCTTAGGGGTCTGGGTTAGTTGAGACTGCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTATCTGAGAGATCTTAGGGGTCTGGGTTAGTTGAGACTGCTGGT  194

seq1  CCCTATGTGGTTGCCCTCCTCAGCTTCTTCCAGCCTTTTCCTAATTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGTGGTTGCCCTCCTCAGCTTCTTCCAGCCTTTTCCTAATTCAAT  244

seq1  GACAGGGGTCCTGGTCTTCAATCCATTGGTTGCATGTAAGTATCTGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGTCCTGGTCTTCAATCCATTGGTTGCATGTAAGTATCTGCAGC  294

seq1  TGTCTCAGTTAACTGCTTGTTGAGCCTCTCAGAGGACAGTCATGCTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGTTAACTGCTTGTTGAGCCTCTCAGAGGACAGTCATGCTAGGC  344

seq1  TCCCATATGTAAGCACATCACCCCATCAATAATATTGTCAGGCCTTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATGTAAGCACATCACCCCATCAATAATATTGTCAGGCCTTGAAG  394

seq1  CCTCCCCTAAATGGATACCAAGTTGGGCCAGTCACTGCACCTCCTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTAAATGGATACCAAGTTGGGCCAGTCACTGCACCTCCTTTCCC  444

seq1  TCATTCTCTTCTTTATTTTTGTCCCTTCATTCCTTTTATACAGGAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCTTCTTTATTTTTGTCCCTTCATTCCTTTTATACAGGAATAAT  494

seq1  TTTGGGTGAAAGTGTTTGATTGCGGGATAGCAACCACATCCCTACACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTGAAAGTGTTTGATTGCGGGATAGCAACCACATCCCTACACTTG  544

seq1  ATGCCATGTCTTTCTACTGGAGGTAGACTCTACAATTGTTCTCTCCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGTCTTTCTACTGGAGGTAGACTCTACAATTGTTCTCTCCCCAC  594

seq1  TGTTGGGCATTTCATCTAAGGCCCCTCCTTTTGTGTCCTAAGAAAATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCATTTCATCTAAGGCCCCTCCTTTTGTGTCCTAAGAAAATTCC  644

seq1  ATCTCCCAGGTCTCTGATACATTCTAGAAGATTCCCCCATTTCCCACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAGGTCTCTGATACATTCTAGAAGATTCCCCCATTTCCCACCTC  694

seq1  CTGAGGTTGCACACATCCATTTATTCTACTAGTCCTCAGGGCTTCTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTGCACACATCCATTTATTCTACTAGTCCTCAGGGCTTCTCTGC  744

seq1  TAATACTACCCCCAATACCTGCTCTAGTCTCAGTGAGGGAAGATGCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTACCCCCAATACCTGCTCTAGTCTCAGTGAGGGAAGATGCACCT  794

seq1  AACCCTTGAGAGACTTGAGACCACATGGAGTGGTGAGGTCTGGTGGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTGAGAGACTTGAGACCACATGGAGTGGTGAGGTCTGGTGGAGGT  844

seq1  GGGGTCATGGGGATATCCTCTTGGAGACAGTGGGGAGGAGGAATGGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATGGGGATATCCTCTTGGAGACAGTGGGGAGGAGGAATGGGATG  894

seq1  GAGAATGTGGGAGGGAGTAATGACTGGACTGTAAAAAATAAAATAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTGGGAGGGAGTAATGACTGGACTGTAAAAAATAAAATAAAAAA  944

seq1  ATGCTCATCAGACATAAGATTTAATGTTCAAAGCACATGGACAGATGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATCAGACATAAGATTTAATGTTCAAAGCACATGGACAGATGATA  994

seq1  TTTTTAGGTATACAACTTTAGTCAAGCTTTCACATACACTGAAATCTAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGTATACAACTTTAGTCAAGCTTTCACATACACTGAAATCTAGA  1044

seq1  AAAAAAACTTTTGTACAGGCCCTAAGAATTTTTGCAAAATGTACATTAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTTTTGTACAGGCCCTAAGAATTTTTGCAAAATGTACATTAAT  1094

seq1  ATAAGGCCAATTCAAATTAATGATTTGGTAACTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCCAATTCAAATTAATGATTTGGTAACTGAATTC  1133


seq1: chr8_39085498_39086615
seq2: B6Ng01-316A04.g_67_1177

seq1  GAATTCATAGAGGTTTGATTTTAGATCAAGAACTATTTAAATTATGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAGGTTTGATTTTAGATCAAGAACTATTTAAATTATGAGAA  50

seq1  AAAACAACCAAGAATTACAGAATTATATGATATAGCATTCTTCTATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCAAGAATTACAGAATTATATGATATAGCATTCTTCTATTTCT  100

seq1  TTATGTTTTTTGAGATAAAGTATTTGATAAAACATAGTTCCTAAGCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTTTGAGATAAAGTATTTGATAAAACATAGTTCCTAAGCAGGT  150

seq1  AAGACCATAGTAAAATAGTCTATGTGACAGTGCTAGGATATTCTTTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATAGTAAAATAGTCTATGTGACAGTGCTAGGATATTCTTTGAGG  200

seq1  AAGAAATAATACTGTCATATGATTACTGATAAAAATGTACACTAGGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAATACTGTCATATGATTACTGATAAAAATGTACACTAGGAAGC  250

seq1  AAGAAGGCTCTTACTGAATTCATTATAAATGGTTGTAACTTGTTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCTCTTACTGAATTCATTATAAATGGTTGTAACTTGTTTTAAAA  300

seq1  TTCTAAATATTAGATAAATTTTTAAAAGACATCACTTTTTATACCACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATATTAGATAAATTTTTAAAAGACATCACTTTTTATACCACTTT  350

seq1  CCAGACTTGAGAACTGAAATATAAGCAGGCAATGCCCTAGATAGCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTGAGAACTGAAATATAAGCAGGCAATGCCCTAGATAGCTGCCT  400

seq1  TCTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  450

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCT  500

seq1  TTCTTTCTCCTCCTCCTCCACCTCCCTCTTCTTCCTCTCCTCCACTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCCTCCTCCTCCACCTCCCTCTTCTTCCTCTCCTCCACTTTTT  550

seq1  TTCTTTTAATTTTATTCTTTTTCTTTCACTTAAAACTTTACACATCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAATTTTATTCTTTTTCTTTCACTTAAAACTTTACACATCTATT  600

seq1  CAATATCTTTAATATCACAGATGAAAGAATGTATGAAAACTAAAAGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTTTAATATCACAGATGAAAGAATGTATGAAAACTAAAAGGGGA  650

seq1  CTGGCTAACCTGGTACCTTTGAGGTCAGAATTTTCTCTGGTAACAACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAACCTGGTACCTTTGAGGTCAGAATTTTCTCTGGTAACAACCTT  700

seq1  AAAGAATATCACAGTTATGACTCTCATCAGAACTCTATTCGGTCACCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATCACAGTTATGACTCTCATCAGAACTCTATTCGGTCACCCTG  750

seq1  ACCTTATCCATGTATACAAAATCAGATGAATACATCAGAATGCAATATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATCCATGTATACAAAATCAGATGAATACATCAGAATGCAATATAA  800

seq1  CAATACTTATCTAATACAAAAATGTTATAAATTTATTCCAAGCTTGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTATCTAATACAAAAATGTTATAAATTTATTCCAAGCTTGAGAT  850

seq1  GCCAATTAAGTAACTTCAAAGCAATATTCATAATACCTTAGTTTTCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTAAGTAACTTCAAAGCAATATTCATAATACCTTAGTTTTCACCA  900

seq1  AAACATAATTAATAAAGGTAAAGCATATAAA-TAGTAATTGAATGTTTTT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAACATAATTAATAAAGGTAAAGCATATAAATTAGTAATTGAATGTTTTT  950

seq1  GTAATCAAACAGTGTTCCTGTGGAATTCC-TAACAGTCGAGTAGAGGCTG  998
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAATCAAACAGTGTTCCTGTGGAATTCCTTAACAGTCGAGTAGAGGCTG  1000

seq1  CCTC-TGACTATTTTGCCTGTTTTGGGGATCCTTTTCCTCTACTTAGTTA  1047
      |||| ||||||||||||||||||  ||||||| |||||||||||||||  
seq2  CCTCTTGACTATTTTGCCTGTTT--GGGATCCCTTTCCTCTACTTAGT--  1046

seq1  ACTAGTATGGCCTTGATGTGATAGCTTGTATCTGGTCTTAATGTCCTGTT  1097
      |||||||| |||||||||||||||||||||||| ||||| |||| |||||
seq2  ACTAGTAT-GCCTTGATGTGATAGCTTGTATCT-GTCTT-ATGT-CTGTT  1092

seq1  CAGCCTTATTGATTGATGTCC  1118
      ||||  || ||| ||||||||
seq2  CAGC--TAATGAATGATGTCC  1111


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