BAC Information

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BAC

Clone NameB6Ng01-316D11
Chromosome8 (Build37)
Map Location 113,000,288 - 113,106,100
singlet/doubletdoublet
Overlap geneHydin
Upstream genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, LOC672398
Downstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316D11.bB6Ng01-316D11.g
ACCGA106665GA106666
length1,1771,126
definitionB6Ng01-316D11.b B6Ng01-316D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,000,288 - 113,001,468)(113,104,969 - 113,106,100)
sequence
gaattcagcattagacttgagagtgtttatttatcaaagagacacagaag
gagtgcaaagacggggtcacaagctgagggaaacttttggcacgcatatt
atcttcaaatgattagtatccataataaagaatagctttgaaggaaaagg
cagaattaaatttagaaatgagagaacatggcagccaggaagttcactga
agctgaaatacgagtgacccacggagaatcaaaagctattccacatcatt
ggtgatcaagaactttggaaactgaaacagaaggaagatgcttttgcaca
gccgccatgttggataaactaaggcagggcccccaacagcacaccattgg
gaggtagatgaggcaggctcagactcggctggaggaagtctacattatgg
tcactttagagtagattctgtctgttgggagtttcagccacactgaagag
caactggtcaagctgatgggagagttcccaaggccccaccctgctctgta
gcctgtctgcctctgggtcacctctttctccagtctgcttctccctccga
agacccacttggttagtacagttctcctccaccatgcttcctgggttgat
cttccttctggcccgccacaccttcatcctgcatcgaatcccactgggga
ccatccaggttcctgttgatcctcagtttctgcatggggacatgggcaca
tatgtcgcatctgggcatgcctatgtacatgtacatactatacacgtaga
gggcagagatcaatgtcagatgtccccaatcatttttcacctcatttttg
gaggcaggctgtctccctgatcctatcagttcagcatggctggctggcct
gtgagcttcaggcatctgtctgtctgcacttgcttagtcctgggattaca
gacttgtgccagcacacccggctttttacattaggggctgggcatctgaa
ccccggccctcctgtttgcaaggcaagaactttaccacctgaacatctcc
ctagcctctcattagttcatcttctttccctcccagtgttttggaaatat
gcaaatgtttttctatatcagaaacagcatctgcgctctggcgaacagcg
tccatctgttcctctcaatcagttactcgctggtcctataggctttgcat
tctctgacccttttgcctctctcaaca

gaattcaaacgatacaactcagactcactggacattcttcccaccgatgc
ccacactggtgaactcaatcacacgggtattaggttcgagaggcccagcg
cctggtcctcggagctctgggttgcgccgatgaccactgatgtagtccga
ctccttcaggtcaaagtggcagaacggcaggacgcttcgcccttttgtta
tcaaaataggaccttgttctccaagtgggaggttgggaattctgaaatga
gagggttatttttaattttgatttttctatcccgttgtccctttcttagc
tggttggaaataaatattctgtttaccagaatgtgagttccatgtgagca
gagggtgggtttgtcttggtcagtcacaccatattttgccttgactggca
cattctatatagtagcataataggcactaatgaatttactgttaaatgga
caagtgggctgactctgaggaacctagatgtaagtaccctctgtgtatgt
ggctctaagtttttccctcctatcagtggttatgtaaacaacgtgcttgc
cctttgggttcactcctaggcatccaatagattatagagaaggacctgga
aaccctaaccaagttattctaagacccttggagaaggtgatgcatatgaa
cagactcagccttggggctgagctgaggtggctctagtgtggcagaggtc
tctctggtataagatcaggggttcaggggaactctggcacttcaggtagg
cctctgccatcctagggcaagacttagagaagcttctacaaggcaggtgt
tctttctggaaaattttcctggaagaaggtgccatatctgggacgctctc
tgatacatgtattgtttacttttttttctctctctctcactggacaccag
accagaccgggtctgccaacccaatattccttcccgtctttgtttattga
gtttattgtgggccaggcattgctgcaggctcttgcttaaactaggtcat
ttagcagcaaataattcttacatgatagggattagtgcttgcattttaat
aatgaggcaatggaagctcaagagaagacagaggaagccttccaaggtta
gagctgctgggctacaaattacctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113000288_113001468
seq2: B6Ng01-316D11.b_46_1222

seq1  GAATTCAGCATTAGACTTGAGAGTGTTTATTTATCAAAGAGACACAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTAGACTTGAGAGTGTTTATTTATCAAAGAGACACAGAAG  50

seq1  GAGTGCAAAGACGGGGTCACAAGCTGAGGGAAACTTTTGGCACGCATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAAAGACGGGGTCACAAGCTGAGGGAAACTTTTGGCACGCATATT  100

seq1  ATCTTCAAATGATTAGTATCCATAATAAAGAATAGCTTTGAAGGAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAAATGATTAGTATCCATAATAAAGAATAGCTTTGAAGGAAAAGG  150

seq1  CAGAATTAAATTTAGAAATGAGAGAACATGGCAGCCAGGAAGTTCACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTAAATTTAGAAATGAGAGAACATGGCAGCCAGGAAGTTCACTGA  200

seq1  AGCTGAAATACGAGTGACCCACGGAGAATCAAAAGCTATTCCACATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAATACGAGTGACCCACGGAGAATCAAAAGCTATTCCACATCATT  250

seq1  GGTGATCAAGAACTTTGGAAACTGAAACAGAAGGAAGATGCTTTTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCAAGAACTTTGGAAACTGAAACAGAAGGAAGATGCTTTTGCACA  300

seq1  GCCGCCATGTTGGATAAACTAAGGCAGGGCCCCCAACAGCACACCATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCATGTTGGATAAACTAAGGCAGGGCCCCCAACAGCACACCATTGG  350

seq1  GAGGTAGATGAGGCAGGCTCAGACTCGGCTGGAGGAAGTCTACATTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGATGAGGCAGGCTCAGACTCGGCTGGAGGAAGTCTACATTATGG  400

seq1  TCACTTTAGAGTAGATTCTGTCTGTTGGGAGTTTCAGCCACACTGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAGAGTAGATTCTGTCTGTTGGGAGTTTCAGCCACACTGAAGAG  450

seq1  CAACTGGTCAAGCTGATGGGAGAGTTCCCAAGGCCCCACCCTGCTCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGTCAAGCTGATGGGAGAGTTCCCAAGGCCCCACCCTGCTCTGTA  500

seq1  GCCTGTCTGCCTCTGGGTCACCTCTTTCTCCAGTCTGCTTCTCCCTCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTGCCTCTGGGTCACCTCTTTCTCCAGTCTGCTTCTCCCTCCGA  550

seq1  AGACCCACTTGGTTAGTACAGTTCTCCTCCACCATGCTTCCTGGGTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACTTGGTTAGTACAGTTCTCCTCCACCATGCTTCCTGGGTTGAT  600

seq1  CTTCCTTCTGGCCCGCCACACCTTCATCCTGCATCGAATCCCACTGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTGGCCCGCCACACCTTCATCCTGCATCGAATCCCACTGGGGA  650

seq1  CCATCCAGGTTCCTGTTGATCCTCAGTTTCTGCATGGGGACATGGGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGGTTCCTGTTGATCCTCAGTTTCTGCATGGGGACATGGGCACA  700

seq1  TATGTCGCATCTGGGCATGCCTATGTACATGTACATACTATACACGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCGCATCTGGGCATGCCTATGTACATGTACATACTATACACGTAGA  750

seq1  GGGCAGAGATCAATGTCAGATGTCCCCAATCATTTTTCACCTCATTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGATCAATGTCAGATGTCCCCAATCATTTTTCACCTCATTTTTG  800

seq1  GAGGCAGGCTGTCTCCCTGATCCTATCAGTTCAGCATGGCTGGCTGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCTGTCTCCCTGATCCTATCAGTTCAGCATGGCTGGCTGGCCT  850

seq1  GTGAGCTTCAGGCATCTGTCTGTCTGCACTTGCTTAGTCCTGGGATTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTTCAGGCATCTGTCTGTCTGCACTTGCTTAGTCCTGGGATTACA  900

seq1  GACTTGTGCCAGCACACCCGGCTTTTTACATTAGGGGCTGGGCATCTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGCCAGCACACCCGGCTTTTTACATTAGGGGCTGGGCATCTGAA  950

seq1  CCCCGGCCCTCCTGTTTGCAAGGCAAGAACTTTACCACCTGAACATCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCCCTCCTGTTTGCAAGGCAAGAACTTTACCACCTGAACATCTCC  1000

seq1  CTAGCCTCTCATTAGTTCATC-TCTTTCCCTCCCAGTGTATGGAAAATAT  1049
      ||||||||||||||||||||| ||||||||||||||||| | | ||||||
seq2  CTAGCCTCTCATTAGTTCATCTTCTTTCCCTCCCAGTGTTTTGGAAATAT  1050

seq1  GCAAAATGTTTTCTAATATCCAGAAAACAGCATCTGCCGCTCTGCCGAAC  1099
      || |||||||||   |||| ||| |||||||||||| ||||||| |||| 
seq2  GC-AAATGTTTTTCTATAT-CAG-AAACAGCATCTG-CGCTCTGGCGAA-  1095

seq1  CAGCCTTCCCATCTGTTCCTCTCCATCAGTAACTTCCTCTGGCTCCTCAT  1149
      |||| |  ||||||||||||||| |||||| |||  | |||| |||| ||
seq2  CAGCGT--CCATCTGTTCCTCTCAATCAGTTACT--CGCTGG-TCCT-AT  1139

seq1  A-GCCTTGCATTCTCTG-CCCTTT----GCTCTCAACA  1181
      | || |||||||||||| ||||||     |||||||||
seq2  AGGCTTTGCATTCTCTGACCCTTTTGCCTCTCTCAACA  1177


seq1: chr8_113104969_113106100
seq2: B6Ng01-316D11.g_71_1196 (reverse)

seq1  AGAGAGTAATTTGTAGCCCAGCAGCTTCTACCCCTTTGGAAAGCTTCCTT  50
      |||| |||||||||||||||||||| |||| ||  |||||| |||||| |
seq2  AGAG-GTAATTTGTAGCCCAGCAGC-TCTAACC--TTGGAAGGCTTCC-T  45

seq1  CTGTCTTCTC-TGAGCCTCCATTGCCTCATATATAAAATGCAAGCACTAA  99
      |||||||||| ||||| |||||||||||||   |||||||||||||||||
seq2  CTGTCTTCTCTTGAGCTTCCATTGCCTCATTATTAAAATGCAAGCACTAA  95

seq1  TCCTTATCATGT-AGAATTATTTGGCCTGCTAAATGACCTAGTTTAAGCA  148
      ||| |||||||| |||||||||||  ||||||||||||||||||||||| 
seq2  TCCCTATCATGTAAGAATTATTTG--CTGCTAAATGACCTAGTTTAAGC-  142

seq1  AAGAGCCTGCAGCAATGCCTGGCCCACAATAAACTCAATAAACAAAGACG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTGCAGCAATGCCTGGCCCACAATAAACTCAATAAACAAAGACG  192

seq1  GGAAGGAATATTGGGTTGGCAGACCCGGTCTGGTCTGGTGTCCAGTGAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAATATTGGGTTGGCAGACCCGGTCTGGTCTGGTGTCCAGTGAGA  242

seq1  GAGAGAGAAAAAAAAGTAAACAAATACATGTATCAGAGAGCGTCCCAGAT  298
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGAGAGAAAAAAAAGTAAAC-AATACATGTATCAGAGAGCGTCCCAGAT  291

seq1  ATGGCACCTTCTTCCAGG-AAATTTTCCAGAAAGAACACCTGCCTTGTAG  347
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGGCACCTTCTTCCAGGAAAATTTTCCAGAAAGAACACCTGCCTTGTAG  341

seq1  AAGCTTCTCTAAGTCTTGCCCTAGGATGGCAGAGGCCTACCTGAAGTGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTCTAAGTCTTGCCCTAGGATGGCAGAGGCCTACCTGAAGTGCC  391

seq1  AGAGTTCCCCTGAACCCCTGATCTTATACCAGAGAGACCTCTGCCACACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCCCTGAACCCCTGATCTTATACCAGAGAGACCTCTGCCACACT  441

seq1  AGAGCCACCTCAGCTCAGCCCCAAGGCTGAGTCTGTTCATATGCATCACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCTCAGCTCAGCCCCAAGGCTGAGTCTGTTCATATGCATCACC  491

seq1  TTCTCCAAGGGTCTTAGAATAACTTGGTTAGGGTTTCCAGGTCCTTCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAGGGTCTTAGAATAACTTGGTTAGGGTTTCCAGGTCCTTCTCT  541

seq1  ATAATCTATTGGATGCCTAGGAGTGAACCCAAAGGGCAAGCACGTTGTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTATTGGATGCCTAGGAGTGAACCCAAAGGGCAAGCACGTTGTTT  591

seq1  ACATAACCACTGATAGGAGGGAAAAACTTAGAGCCACATACACAGAGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACCACTGATAGGAGGGAAAAACTTAGAGCCACATACACAGAGGGT  641

seq1  ACTTACATCTAGGTTCCTCAGAGTCAGCCCACTTGTCCATTTAACAGTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATCTAGGTTCCTCAGAGTCAGCCCACTTGTCCATTTAACAGTAA  691

seq1  ATTCATTAGTGCCTATTATGCTACTATATAGAATGTGCCAGTCAAGGCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAGTGCCTATTATGCTACTATATAGAATGTGCCAGTCAAGGCAA  741

seq1  AATATGGTGTGACTGACCAAGACAAACCCACCCTCTGCTCACATGGAACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGTGTGACTGACCAAGACAAACCCACCCTCTGCTCACATGGAACT  791

seq1  CACATTCTGGTAAACAGAATATTTATTTCCAACCAGCTAAGAAAGGGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTGGTAAACAGAATATTTATTTCCAACCAGCTAAGAAAGGGACA  841

seq1  ACGGGATAGAAAAATCAAAATTAAAAATAACCCTCTCATTTCAGAATTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATAGAAAAATCAAAATTAAAAATAACCCTCTCATTTCAGAATTCC  891

seq1  CAACCTCCCACTTGGAGAACAAGGTCCTATTTTGATAACAAAAGGGCGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCCCACTTGGAGAACAAGGTCCTATTTTGATAACAAAAGGGCGAA  941

seq1  GCGTCCTGCCGTTCTGCCACTTTGACCTGAAGGAGTCGGACTACATCAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCTGCCGTTCTGCCACTTTGACCTGAAGGAGTCGGACTACATCAGT  991

seq1  GGTCATCGGCGCAACCCAGAGCTCCGAGGACCAGGCGCTGGGCCTCTCGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCGGCGCAACCCAGAGCTCCGAGGACCAGGCGCTGGGCCTCTCGA  1041

seq1  ACCTAATACCCGTGTGATTGAGTTCACCAGTGTGGGCATCGGTGGGAAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATACCCGTGTGATTGAGTTCACCAGTGTGGGCATCGGTGGGAAGA  1091

seq1  ATGTCCAGTGAGTCTGAGTTGTATCGTTTGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGTGAGTCTGAGTTGTATCGTTTGAATTC  1126


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