BAC Information

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BAC

Clone NameB6Ng01-316M20
Chromosome12 (Build37)8 (Build37)
Map Location 81,591,565 - 81,592,51786,856,031 - 86,856,292
singlet/doubletsingletsinglet
Overlap geneExdl2
Upstream geneRad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22
Downstream gene2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316M20.bB6Ng01-316M20.g
ACCGA107106GA107107
length980427
definitionB6Ng01-316M20.b B6Ng01-316M20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,591,565 - 81,592,517)(86,856,031 - 86,856,292)
sequence
gaattccaggtatcatttgtagctctgcttcctagccaatacagattgag
agtcgagtgtggttttttgcctgtttgctttttctacttgtattatattt
gatactgatgttgtgaataatttgagtcattcagaaaagagtgtggaaag
gtcttgggaagcttgaccaacagctttcagcatgagatttcctttccctg
cagaaaatcccctctctatgataactgcttcctccaagctcctgatggac
agcccttgtgcacctgtgaccgcaggaaagctcagtggtacctggacaaa
ggcattggaggtgtgagactcgtctgccatgcttgtttatacatagggtc
ttgttgtgagtagggtgtggaagagggagactgcaggaagaccaggaggg
cttgagatgttcgggctgggtagtcataagctggagttctctgcttgcac
acaaagaacagtagttaagagagcttcttgggagtgcccagcactgatgc
attctctttttcctaagagctggtgagtaaagaaccttttgtggtcaggc
tacagtttgaacctgcaggaagacctgagtccccaggagattattacttg
atggttaaagagaatctgtgtgttgtctgtggcaagacagatacctacat
ccggtgagtatggtattagactaatctgcctcctgtggcagtttgcctgt
gtagtcatatgttgagccctcagatgccctggttgagtttttcccactat
gggcagagagtctttactctacatacaccgcagtttttccttacagtctt
tcagcctttctacttgctgtcttctcatggccctctgttcctccctaaaa
gcagacttttgaagctgggatccttgggaatcccctccctgaagctctcg
agctttcctgaacttgtagttgttgggttatagaagtctccccaaggttg
gtccttttcacatttagggttttccacagt
agttcccagcacccaagacagtcagctcacaactgccgtaactccagctc
caggggatcctatgcctccggcctatatgggtacctacacatacacatga
cctatgtatatatatatatatatacatatatatatatatatatatacata
cacatgattaaaaataaaataaaactgtaaatatatgtatatatgttttt
taataaaaattacactgataggctatagttaaagacaatattgaccatat
tcttgaaatttgctgagtagggtttttttaaaaagaattatttatttatt
ttatgtgtataagtacactgtagctgtcttcagacacaccagaagaggac
atcagatcccattacagatggtcatgagccaccatgtgattgctgggaat
tgaactcaggacctctggaagagcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81591565_81592517
seq2: B6Ng01-316M20.b_46_1025

seq1  GAATTCCAGGTATCATTTGTAGCTCTGCTTCCTAGCCAATACAGATTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTATCATTTGTAGCTCTGCTTCCTAGCCAATACAGATTGAG  50

seq1  AGTCGAGTGTGGTTTTTTGCCTGTTTGCTTTTTCTACTTGTATTATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAGTGTGGTTTTTTGCCTGTTTGCTTTTTCTACTTGTATTATATTT  100

seq1  GATACTGATGTTGTGAATAATTTGAGTCATTCAGAAAAGAGTGTGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGATGTTGTGAATAATTTGAGTCATTCAGAAAAGAGTGTGGAAAG  150

seq1  GTCTTGGGAAGCTTGACCAACAGCTTTCAGCATGAGATTTCCTTTCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGAAGCTTGACCAACAGCTTTCAGCATGAGATTTCCTTTCCCTG  200

seq1  CAGAAAATCCCCTCTCTATGATAACTGCTTCCTCCAAGCTCCTGATGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCCCCTCTCTATGATAACTGCTTCCTCCAAGCTCCTGATGGAC  250

seq1  AGCCCTTGTGCACCTGTGACCGCAGGAAAGCTCAGTGGTACCTGGACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGTGCACCTGTGACCGCAGGAAAGCTCAGTGGTACCTGGACAAA  300

seq1  GGCATTGGAGGTGTGAGACTCGTCTGCCATGCTTGTTTATACATAGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGGAGGTGTGAGACTCGTCTGCCATGCTTGTTTATACATAGGGTC  350

seq1  TTGTTGTGAGTAGGGTGTGGAAGAGGGAGACTGCAGGAAGACCAGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGAGTAGGGTGTGGAAGAGGGAGACTGCAGGAAGACCAGGAGGG  400

seq1  CTTGAGATGTTCGGGCTGGGTAGTCATAAGCTGGAGTTCTCTGCTTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATGTTCGGGCTGGGTAGTCATAAGCTGGAGTTCTCTGCTTGCAC  450

seq1  ACAAAGAACAGTAGTTAAGAGAGCTTCTTGGGAGTGCCCAGCACTGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACAGTAGTTAAGAGAGCTTCTTGGGAGTGCCCAGCACTGATGC  500

seq1  ATTCTCTTTTTCCTAAGAGCTGGTGAGTAAAGAACCTTTTGTGGTCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTTTCCTAAGAGCTGGTGAGTAAAGAACCTTTTGTGGTCAGGC  550

seq1  TACAGTTTGAACCTGCAGGAAGACCTGAGTCCCCAGGAGATTATTACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTGAACCTGCAGGAAGACCTGAGTCCCCAGGAGATTATTACTTG  600

seq1  ATGGTTAAAGAGAATCTGTGTGTTGTCTGTGGCAAGACAGATACCTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAAAGAGAATCTGTGTGTTGTCTGTGGCAAGACAGATACCTACAT  650

seq1  CCGGTGAGTATGGTATTAGACTAATCTGCCTCCTGTGGCAG-TTGCCTGT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCGGTGAGTATGGTATTAGACTAATCTGCCTCCTGTGGCAGTTTGCCTGT  700

seq1  GTAGTCATATGTTGAGCCCTCAGATGCCCTGGTTGAG-TTTTCCCACAAT  748
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  GTAGTCATATGTTGAGCCCTCAGATGCCCTGGTTGAGTTTTTCCCACTAT  750

seq1  -GGCAGAGAGTC-TTACTCTACATACACCGCAG-TTTTCCTTACAG--CT  793
       ||||||||||| |||||||||||||||||||| ||||||||||||   |
seq2  GGGCAGAGAGTCTTTACTCTACATACACCGCAGTTTTTCCTTACAGTCTT  800

seq1  TCAGCC-TTCTACCTGCTGTC-TCTCATGG-CCTCTGTTCCTCC--TAAA  838
      |||||| |||||| ||||||| |||||||| |||||||||||||   |||
seq2  TCAGCCTTTCTACTTGCTGTCTTCTCATGGCCCTCTGTTCCTCCCTAAAA  850

seq1  GCAGAC-TTTGAAGCT-GGATCC-TGGGA--TCCCTCCCTGAAGCTCTCG  883
      |||||| ||||||||| |||||| |||||   ||||||||||||||||||
seq2  GCAGACTTTTGAAGCTGGGATCCTTGGGAATCCCCTCCCTGAAGCTCTCG  900

seq1  AGCTTT-CTGAAC-TGTAG-TGTT-GGTTATAG-AGTCT-CCCAAGGTT-  926
      |||||| |||||| ||||| |||| |||||||| ||||| ||||||||| 
seq2  AGCTTTCCTGAACTTGTAGTTGTTGGGTTATAGAAGTCTCCCCAAGGTTG  950

seq1  GTCC-TTTCACA-TTAGGG-TTCCCACAGT  953
      |||| ||||||| |||||| || |||||||
seq2  GTCCTTTTCACATTTAGGGTTTTCCACAGT  980

seq1: chr8_86856031_86856292
seq2: B6Ng01-316M20.g_184_504 (reverse)

seq1  ACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAATCACATGGTGGC  50
      ||||||||||   ||||||||||||||| |||||||||||||||||||||
seq2  ACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAATCACATGGTGGC  50

seq1  TCACAACCATCTGTAATGAGATTTGATGCCCTCTTCTGGTGTGTCTGAAG  100
      |||  ||||||||||||| ||| ||||| |||||||||||||||||||||
seq2  TCATGACCATCTGTAATGGGATCTGATGTCCTCTTCTGGTGTGTCTGAAG  100

seq1  ACAGCTACAGTGTACTT----AGATATAAT-AATAAATAAATC--TAAAA  143
      |||||||||||||||||    | ||| ||| ||||||||| ||  |  ||
seq2  ACAGCTACAGTGTACTTATACACATAAAATAAATAAATAATTCTTTTTAA  150

seq1  AAAAAGACTCCT-------TTT--ATAAGATG--CA--------TGTAAA  174
      |||||  || ||       |||  | || |||  ||        | ||| 
seq2  AAAAACCCTACTCAGCAAATTTCAAGAATATGGTCAATATTGTCTTTAAC  200

seq1  ACAAGTGAAGAAGATTAATTT-----------CATCT---GATGTGTGTG  210
         ||   |  ||  ||||||           ||| |    || | | | 
seq2  TATAGCCTATCAGTGTAATTTTTATTAAAAAACATATATACATATATTTA  250

seq1  CATATTTA---TCTCTCTCTCCCTGTGTATGTGTGTGTATATATATATAT  257
      ||  ||||   | | | |   | ||||||||| | | |||||||||||||
seq2  CAGTTTTATTTTATTTTTAATCATGTGTATGTATATATATATATATATAT  300

seq1  ATATA----------------  262
      || ||                
seq2  ATGTATATATATATATATATA  321