BAC Information

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BAC

Clone NameB6Ng01-316O24
Chromosome8 (Build37)
Map Location 39,965,722 - 40,090,926
singlet/doubletdoublet
Overlap geneTusc3
Upstream geneSgcz
Downstream geneLOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316O24.bB6Ng01-316O24.g
ACCGA107209GA107210
length1,105502
definitionB6Ng01-316O24.b B6Ng01-316O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,089,840 - 40,090,926)(39,965,722 - 39,966,229)
sequence
gaattctcacagactttaaatactcaaatcccaaagtcacgcagctgtcc
ttgcagcagaccctggaaccactttccagcacaaggctatgtaactctaa
tccaccaccttcttcctgccttcctgagtaccagctacatatgtggtgcc
tatacagtcaggcaaaacactcatgcatatatttaaaaaattaaaattac
aatcttaaaaacaaatctcttaactgtaggtttctgtaaatacaaaataa
ttatatcctttcttattattatcttgtggggtccacttaaagccaacatg
aatccaaaataactcaaaaatgaggttaatgcagataacaaaaatttact
gtaatcaaactgatactgatcaatcaggggccacaaaagagacttgggag
ctgaattaggaccctgaagagaaaatgcacaggatatttaaaggatatga
ccactaagtgaggggaagcagggtgggttgtagcattgtacaatcacatt
ttgacataagggttgagcaagggaattttcatcaatcaagttagaagtag
attcctgggcctgggaacacgaacttagtttcaccttgccaacaagatga
acaagttgtccttgagatgtctggactcacacaactatttccttacaata
gaagctgttcagctactgggaggtccccagttctccgagggcctgtgact
ttgagtttagtttctccctatgattaaatagggtctaaaaatgaaatggt
agtacttagaataaggtgctttttttttttctcgtttgttcccaataatt
ccaagagaaaagaaacagagcaggtcaaggaatatctatctaacagtttg
agaagtaggattcactcaagattttctggactcagaggacatgtgccctt
tcacttcttgtgccctctgctatcctgaacacacacagcttgtctcacag
gttctggccagctccgctacaacacttgacactgtccttgatggtcatct
ccaataatgctagggtcttccttctgctccctcagtttaagtgccttctt
cttgggtcttctttaagacagattctttggaaatggcctgtgccagcctt
agctt

acatggctcacagatactaaaggcaagcaaacactgggtcttcatgtttc
tgccccagactctctgtgaatctgttttggccgttagtttggtgtttttg
tgagactcataacaacggggttggtatatcttttactcttttgcctgcct
ttgagatacttttcctcctatttgacgttttactgaagcctcaatatgag
ggcttttgccttgtgttattgtatttttttttcctgtttggatgttgtct
attgcctgttgttttctgaagaggaaacccagggtgggagatgaatttga
tgaagaggggatgtaggagacaactaggaagagtggaggaagggtaaaca
gtggctgggctgtattgcatggcagaagaatctattttcaatacaaataa
gtgatagaagatagatgcaatattatagatagacaatagagtgagacaga
gagtgaaagagggatgatagaaaatagatagatagatagatagatagata
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40089840_40090926
seq2: B6Ng01-316O24.b_45_1149 (reverse)

seq1  AAGCTAAGGCTGGCACA-GCCATT--CAA--GATCTGTC-TAAAG-AGAA  43
      ||||||||||||||||| ||||||  |||   ||||||| ||||| ||| 
seq2  AAGCTAAGGCTGGCACAGGCCATTTCCAAAGAATCTGTCTTAAAGAAGAC  50

seq1  CCAAGA--GAGGCACTT-AACTGA-GGAGCAGA--GGAGA-CCTAGCA-T  85
      ||||||   |||||||| |||||| ||||||||  | ||| ||||||| |
seq2  CCAAGAAGAAGGCACTTAAACTGAGGGAGCAGAAGGAAGACCCTAGCATT  100

seq1  ATTGGAGATGACCATCAAGGACAGTGTCAAGTG-TGTAGCGGAGCTGGCC  134
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTGGAGATGACCATCAAGGACAGTGTCAAGTGTTGTAGCGGAGCTGGCC  150

seq1  AGAACCTGTGAGACAAGCTGTGTGTGTTCAGGATAGCAGA-GGCACAAGA  183
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAACCTGTGAGACAAGCTGTGTGTGTTCAGGATAGCAGAGGGCACAAGA  200

seq1  AGTGAAAGGGCACATGTCCTCTGAGTCCAGAAAATCTTGAGTGAATCCTA  233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAGGGCACATGTCCTCTGAGTCCAGAAAATCTTGAGTGAATCCTA  250

seq1  CTTCTCAAACTGTTAGATAGATATTCCTTGACCTGCTCTGTTTCTTTTCT  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAACTGTTAGATAGATATTCCTTGACCTGCTCTGTTTCTTTTCT  300

seq1  CTTGGAATTATTGGGAACAAACGAG-AAAAAAAAAAGCACCTTATTCTAA  332
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTGGAATTATTGGGAACAAACGAGAAAAAAAAAAAGCACCTTATTCTAA  350

seq1  GTACTACCATTTCATTTTTAGACCCTATTTAATCATAGGGAGAAACTAAA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACCATTTCATTTTTAGACCCTATTTAATCATAGGGAGAAACTAAA  400

seq1  CTCAAAGTCACAGGCCCTCGGAGAACTGGGGACCTCCCAGTAGCTGAACA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTCACAGGCCCTCGGAGAACTGGGGACCTCCCAGTAGCTGAACA  450

seq1  GCTTCTATTGTAAGGAAATAGTTGTGTGAGTCCAGACATCTCAAGGACAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATTGTAAGGAAATAGTTGTGTGAGTCCAGACATCTCAAGGACAA  500

seq1  CTTGTTCATCTTGTTGGCAAGGTGAAACTAAGTTCGTGTTCCCAGGCCCA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCATCTTGTTGGCAAGGTGAAACTAAGTTCGTGTTCCCAGGCCCA  550

seq1  GGAATCTACTTCTAACTTGATTGATGAAAATTCCCTTGCTCAACCCTTAT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTACTTCTAACTTGATTGATGAAAATTCCCTTGCTCAACCCTTAT  600

seq1  GTCAAAATGTGATTGTACAATGCTACAACCCACCCTGCTTCCCCTCACTT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATGTGATTGTACAATGCTACAACCCACCCTGCTTCCCCTCACTT  650

seq1  AGTGGTCATATCCTTTAAATATCCTGTGCATTTTCTCTTCAGGGTCCTAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCATATCCTTTAAATATCCTGTGCATTTTCTCTTCAGGGTCCTAA  700

seq1  TTCAGCTCCCAAGTCTCTTTTGTGGCCCCTGATTGATCAGTATCAGTTTG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCCCAAGTCTCTTTTGTGGCCCCTGATTGATCAGTATCAGTTTG  750

seq1  ATTACAGTAAATTTTTGTTATCTGCATTAACCTCATTTTTGAGTTATTTT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTAAATTTTTGTTATCTGCATTAACCTCATTTTTGAGTTATTTT  800

seq1  GGATTCATGTTGGCTTTAAGTGGACCCCACAAGATAATAATAAGAAAGGA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATGTTGGCTTTAAGTGGACCCCACAAGATAATAATAAGAAAGGA  850

seq1  TATAATTATTTTGTATTTACAGAAACCTACAGTTAAGAGATTTGTTTTTA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATTTTGTATTTACAGAAACCTACAGTTAAGAGATTTGTTTTTA  900

seq1  AGATTGTAATTTTAATTTTTTAAATATATGCATGAGTGTTTTGCCTGACT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTAATTTTAATTTTTTAAATATATGCATGAGTGTTTTGCCTGACT  950

seq1  GTATAGGCACCACATATGTAGCTGGTACTCAGGAAGGCAGGAAGAAGGTG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGCACCACATATGTAGCTGGTACTCAGGAAGGCAGGAAGAAGGTG  1000

seq1  GTGGATTAGAGTTACATAGCCTTGTGCTGGAAAGTGGTTCCAGGGTCTGC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTAGAGTTACATAGCCTTGTGCTGGAAAGTGGTTCCAGGGTCTGC  1050

seq1  TGCAAGGACAGCTGCGTGACTTTGGGATTTGAGTATTTAAAGTCTGTGAG  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGACAGCTGCGTGACTTTGGGATTTGAGTATTTAAAGTCTGTGAG  1100

seq1  AATTC  1087
      |||||
seq2  AATTC  1105


seq1: chr8_39965722_39966229
seq2: B6Ng01-316O24.g_67_574

seq1  GAATTCACATGGCTCACAGATACTAAAGGCAAGCAAACACTGGGTCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGCTCACAGATACTAAAGGCAAGCAAACACTGGGTCTTCA  50

seq1  TGTTTCTGCCCCAGACTCTCTGTGAATCTGTTTTGGCCGTTAGTTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGCCCCAGACTCTCTGTGAATCTGTTTTGGCCGTTAGTTTGGTG  100

seq1  TTTTTGTGAGACTCATAACAACGGGGTTGGTATATCTTTTACTCTTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGAGACTCATAACAACGGGGTTGGTATATCTTTTACTCTTTTGC  150

seq1  CTGCCTTTGAGATACTTTTCCTCCTATTTGACGTTTTACTGAAGCCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTGAGATACTTTTCCTCCTATTTGACGTTTTACTGAAGCCTCAA  200

seq1  TATGAGGGCTTTTGCCTTGTGTTATTGTATTTTTTTTTCCTGTTTGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGCTTTTGCCTTGTGTTATTGTATTTTTTTTTCCTGTTTGGATG  250

seq1  TTGTCTATTGCCTGTTGTTTTCTGAAGAGGAAACCCAGGGTGGGAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATTGCCTGTTGTTTTCTGAAGAGGAAACCCAGGGTGGGAGATGA  300

seq1  ATTTGATGAAGAGGGGATGTAGGAGACAACTAGGAAGAGTGGAGGAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGAAGAGGGGATGTAGGAGACAACTAGGAAGAGTGGAGGAAGGG  350

seq1  TAAACAGTGGCTGGGCTGTATTGCATGGCAGAAGAATCTATTTTCAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTGGCTGGGCTGTATTGCATGGCAGAAGAATCTATTTTCAATAC  400

seq1  AAATAAGTGATAGAAGATAGATGCAATATTATAGATAGACAATAGAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTGATAGAAGATAGATGCAATATTATAGATAGACAATAGAGTGA  450

seq1  GACAGAGAGTGAAAGAGGGATGATAGAAAATAGATAGATAGATAGATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGTGAAAGAGGGATGATAGAAAATAGATAGATAGATAGATAGA  500

seq1  TAGATAGA  508
      ||||||||
seq2  TAGATAGA  508


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