BAC Information

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BAC

Clone NameB6Ng01-317C21
Chromosome8 (Build37)
Map Location 40,694,598 - 40,695,716
singlet/doubletsinglet
Overlap geneMsr1
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304
Downstream geneEG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317C21.bB6Ng01-317C21.g
ACCGA107390GA107391
length4721,097
definitionB6Ng01-317C21.b B6Ng01-317C21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctctccccttcaggaccctaaatcattcgcccaactcttgcataagagtt
cctgagctccatccagtgtttggtgtgactctatgtatctgtctgagtca
gatgctgggtagagcctctcagagggcagctaggctcctatcaccaagca
tagcacagtatcattaataatgtcaggtattagtgcttattcatgggatg
tgtttctagttgggccagttattgtttggccattgcctcaatctcttctc
cataccctgtccctgaatctcacatagatggggaaatacaatagttgtag
taggatgctagagggaggaaactgggtaggagaggaaatgggaaaaatgg
gggtttgggatcaggtgtggggagaaacaaaggagatggccagatagtca
tgataatgaatggacatctgcagctggcagtcttgggtggtagtgggtgt
tgtggtcatctctattattttg

gaattcttccctctattgcacagttgctttgaaaattactcacaatatca
ataacacatttttcttaagagatagcagtttatgcaacttatcctactat
cctctcagtttatcatctctgacaccttagctagactctgatttctatcc
tcaatagagaaagagaaaagaacttttacaacttgacttttcttttatga
gactttttttgagagtttcatgcaacatattttgatcatatttacttccg
ttccccaactcctcttagatccaccctcaccacacattttcgtgtccatt
tttaaaaacctataaagtcccatttatattgcccaattattcttggatac
gggccctgaagtggacccattttgatataccaagggtatatcaaagaaat
ccactactcctttccccaaagttatcaattgtcaacagtgacttagctac
taatgatgagactttggacccatctaccctaatgttcagatttttgctgt
ctttagctggtatagataacctctttaatagcacaattattttatggttg
attttagggttttaatatgaattatttcattcattttgtactttcatgtt
ttgtttttttctctggttggaatatttgtatgtccctcttaaatattttt
ggtccctaactcaccaagctttttaaaaaatgtaatctgtataaaataga
ttgagacttgaaccacttaaactgtataaattacaccaattgaaatggtt
tgggattttattttaaattaagttagcattagttaaagctaaatattaca
tagctgatgcctatgaaggcaactgctaattttcacttttatattgaagt
tttttttaatatccttaaatgtgctctttatttctgagtaaataatttca
agtgccattaatttggcaaaataattaagtacacaaaaagacccaatgtt
ttaatttttagagtacttcataatgagactacaccaaatcttcacactgt
tcaaaaagaaggattagaatctaaatataacgggggaggtcagcatgtgt
gtcatcgattttattctccaagagtcagccacaggtataactcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40694598_40695716
seq2: B6Ng01-317C21.g_66_1162

seq1  GAATTCTTCCCTCTATTGCACAGTTGCTTTGAAAATTACTCACAATATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTCTATTGCACAGTTGCTTTGAAAATTACTCACAATATCA  50

seq1  ATAACACATTTTTCTTAAGAGATAGCAGTTTATGCAACTTATCCTACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACATTTTTCTTAAGAGATAGCAGTTTATGCAACTTATCCTACTAT  100

seq1  CCTCTCAGTTTATCATCTCTGACACCTTAGCTAGACTCTGATTTCTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGTTTATCATCTCTGACACCTTAGCTAGACTCTGATTTCTATCC  150

seq1  TCAATAGAGAAAGAGAAAAGAACTTTTACAACTTGACTTTTCTTTTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGAGAAAGAGAAAAGAACTTTTACAACTTGACTTTTCTTTTATGA  200

seq1  GACTTTTTTTGAGAGTTTCATGCAACATATTTTGATCATATTTACTTCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTTTGAGAGTTTCATGCAACATATTTTGATCATATTTACTTCCG  250

seq1  TTCCCCAACTCCTCTTAGATCCACCCTCACCACACATTTTCGTGTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAACTCCTCTTAGATCCACCCTCACCACACATTTTCGTGTCCATT  300

seq1  TTTAAAAACCTATAAAGTCCCATTTATATTGCCCAATTATTCTTGGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACCTATAAAGTCCCATTTATATTGCCCAATTATTCTTGGATAC  350

seq1  GGGCCCTGAAGTGGACCCATTTTGATATACCAAGGGTATATCAAAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGAAGTGGACCCATTTTGATATACCAAGGGTATATCAAAGAAAT  400

seq1  CCACTACTCCTTTCCCCAAAGTTATCAATTGTCAACAGTGACTTAGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACTCCTTTCCCCAAAGTTATCAATTGTCAACAGTGACTTAGCTAC  450

seq1  TAATGATGAGACTTTGGACCCATCTACCCTAATGTTCAGATTTTTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGAGACTTTGGACCCATCTACCCTAATGTTCAGATTTTTGCTGT  500

seq1  CTTTAGCTGGTATAGATAACCTCTTTAATAGCACAATTATTTTATGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTGGTATAGATAACCTCTTTAATAGCACAATTATTTTATGGTTG  550

seq1  ATTTTAGGGTTTTAATATGAATTATTTCATTCATTTTGTACTTTCATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGGTTTTAATATGAATTATTTCATTCATTTTGTACTTTCATGTT  600

seq1  TTGTTTTTTTCTCTGGTTGGAATATTTGTATGTCCCTCTTAAATATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTCTCTGGTTGGAATATTTGTATGTCCCTCTTAAATATTTTT  650

seq1  GGTCCCTAACTCACCAAGCTTTTTAAAAAATGTAATCTGTATAAAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTAACTCACCAAGCTTTTTAAAAAATGTAATCTGTATAAAATAGA  700

seq1  TTGAGACTTGAACCACTTAAACTGTATAAATTACACCAATTGAAATGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTTGAACCACTTAAACTGTATAAATTACACCAATTGAAATGGTT  750

seq1  TGGGATTTTATTTTAAATTAAGTTAGCATTAGTTAAAGCTAAATATTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTTATTTTAAATTAAGTTAGCATTAGTTAAAGCTAAATATTACA  800

seq1  TAGCTGATGCCTATGAAGGCAACTGCTAATTTTCACTTTTATATTGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATGCCTATGAAGGCAACTGCTAATTTTCACTTTTATATTGAAGT  850

seq1  TTTTTTTAATATCCTTAAATGTGCTCTTTATTTCTGAGTAAATAATTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATATCCTTAAATGTGCTCTTTATTTCTGAGTAAATAATTTCA  900

seq1  AGTGCCATTAAATTGGCAAAATAATTAAGTAACACAAAAAAGAACCCAAT  950
      ||||||||||| |||||||||||||||||| |||||||||   |||||||
seq2  AGTGCCATTAATTTGGCAAAATAATTAAGT-ACACAAAAA--GACCCAAT  947

seq1  GTTTTAATTTTTAAGAGTACTCCATAATGAAGACTACAACCAAATCTTCA  1000
      |||||||||||| |||||||| ||||||| ||||||| ||||||||||||
seq2  GTTTTAATTTTT-AGAGTACTTCATAATG-AGACTAC-ACCAAATCTTCA  994

seq1  CACTGTTCAAAAAAGAAAGGATTAAGAATCTAAAAATATAAAGGGGGGAG  1050
      |||||||||||||   ||||||| |||||||||| ||   || |||||||
seq2  CACTGTTCAAAAA--GAAGGATT-AGAATCTAAATAT---AACGGGGGAG  1038

seq1  GGTTAAAGGCATGTGTGGTTCATCGATTTTATTCTTCACAAAGAGTCAGC  1100
      |  | |  |||||||||  ||||||||||||||||   | ||||||||||
seq2  G--TCA--GCATGTGTG--TCATCGATTTTATTCT---CCAAGAGTCAGC  1079

seq1  CACAGTATAAAACTCAGTT  1119
      |||||  || |||||||||
seq2  CACAG-GTATAACTCAGTT  1097


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