BAC Information

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BAC

Clone NameB6Ng01-318B19
Chromosome8 (Build37)
Map Location 110,131,278 - 110,316,112
singlet/doubletdoublet
Overlap geneLOC100041744, LOC668038
Upstream geneCdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
Downstream geneAtbf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318B19.bB6Ng01-318B19.g
ACCGA108082GA108083
length8491,139
definitionB6Ng01-318B19.b B6Ng01-318B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,131,278 - 110,132,126)(110,314,972 - 110,316,112)
sequence
gaattcactctgcagaccaggctggcctcgaactcagaaatccgcctgcc
tctgtctcccaaatgctgggattaaaggcatgcgccaccactgcccggct
gcctgttcattctaactcacgttagatgattagatgatgagttaaggaaa
atggatttggaaagcattgctcagagttagcagtacttgatagagcaagg
gaaagggagaaaacccaaactggaatgttagcacaattcatttcggtaag
atgccacttataagatcccattgccaaagtgaggctctggaggcgtgttg
ctctgaaatgtggcttctacatgcacgtatgcatggtgtgcacgcatgca
cctgcatatatgcacatgggtgtgtgcatacatacatacataccccctcc
atacccctcagtatagctagcaggtgtcttgcccctgtattttgatgttt
aacaagaagccaagtcagtcccaggtagaaaatatgaaaaaaaaaaaaaa
aacaatttgttcccgttgcttgttccaaagcatcatggaacccagcttgt
aagctacccagtttctactcttcagacagctactcagctgtgtacatggg
ttctgagcgctacagttctcggccatggaaataaacgcattcaaaaatcg
taggtctctgcaccgtaaagtgagtgcggtcttgcgagaagaatgagtct
ggtcctgtttggggctctacagagcatttggtgataatcaggggaagaca
tggcttgccttttgtgcctcagctttgtccctataacccctcagataata
gaatctgccctttaggagtccaaccctttcccggggggggggggggggg
gaattcttcttggcccgaacattccatcaatccattgccttttccctcaa
gatctttctttcttaaacatttttaaaacccgtaaaagaattatggccta
agctgtaagtggtctctattttctgttgaaaatctatgacagcttgccag
agtgacaacagtaatccgtcttcaatggatctggtgtcacagattcaggg
gatgggtagtaaatgtgacaagtttcagatgcgctaaccagagaaagtcc
ctcagccactctcttccctgattcccatgactgcccccattcttgcctgc
tctacaacagacttaataatgggtctagcatcttccatatccccaacact
ggcagctgggacaaagccatggtgagcattaaccaccatctgatgcccca
tctccagaacttccgcctttctcaccattctagtcatttctagaaaaatg
ctctgttccgcagaggtagcgctgacctacttgcaagtgtttgttagttt
gaacaaactaaataaatgagagggaggacaagcttttaaaattccactac
agtgaagcaaacctcctgacttgtcatgtccgggcagatgcaggttttct
gagaatttgccagtgtgtcaaagtgacaggagagaaaaaaaatctgttcc
caagctcctttagtcaagtaaatacttggaaatccactgtgtaactaaga
ggcatagcatcctggccttttcaaagatacaatgtaaacaacctgcatgg
atagatagacaggattttggaggtcaatacagaaggaggaggagagagaa
aggacaaataatactaaggatgtttgaaaaagccttaaggagccatattc
tctatttgtaccaattatacacacacagacacacaaacatattaaatgaa
attatacatacactcgtgcacacacacacacacacacacacacacacaca
cacacatatcttaagtgaaatcagccactgggctgacattgctctcatgt
gaccatagatatatattaaccccagtgccaggcacaagaaaccctcctca
tgtggtgtcaagtaacttgaagaataactctcaaaaacaagcgaatttcc
tgtgtgtctttggaacactcgtgtatgcctgaaggcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_110131278_110132126
seq2: B6Ng01-318B19.b_45_893

seq1  GAATTCACTCTGCAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGCAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGTCTCCCAAATGCTGGGATTAAAGGCATGCGCCACCACTGCCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCCAAATGCTGGGATTAAAGGCATGCGCCACCACTGCCCGGCT  100

seq1  GCCTGTTCATTCTAACTCACGTTAGATGATTAGATGATGAGTTAAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTCATTCTAACTCACGTTAGATGATTAGATGATGAGTTAAGGAAA  150

seq1  ATGGATTTGGAAAGCATTGCTCAGAGTTAGCAGTACTTGATAGAGCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTGGAAAGCATTGCTCAGAGTTAGCAGTACTTGATAGAGCAAGG  200

seq1  GAAAGGGAGAAAACCCAAACTGGAATGTTAGCACAATTCATTTCGGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGAAAACCCAAACTGGAATGTTAGCACAATTCATTTCGGTAAG  250

seq1  ATGCCACTTATAAGATCCCATTGCCAAAGTGAGGCTCTGGAGGCGTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTTATAAGATCCCATTGCCAAAGTGAGGCTCTGGAGGCGTGTTG  300

seq1  CTCTGAAATGTGGCTTCTACATGCACGTATGCATGGTGTGCACGCATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATGTGGCTTCTACATGCACGTATGCATGGTGTGCACGCATGCA  350

seq1  CCTGCATATATGCACATGGGTGTGTGCATACATACATACATACCCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATATATGCACATGGGTGTGTGCATACATACATACATACCCCCTCC  400

seq1  ATACCCCTCAGTATAGCTAGCAGGTGTCTTGCCCCTGTATTTTGATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCTCAGTATAGCTAGCAGGTGTCTTGCCCCTGTATTTTGATGTTT  450

seq1  AACAAGAAGCCAAGTCAGTCCCAGGTAGAAAATATGAAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAGCCAAGTCAGTCCCAGGTAGAAAATATGAAAAAAAAAAAAAA  500

seq1  AACAATTTGTTCCCGTTGCTTGTTCCAAAGCATCATGGAACCCAGCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTGTTCCCGTTGCTTGTTCCAAAGCATCATGGAACCCAGCTTGT  550

seq1  AAGCTACCCAGTTTCTACTCTTCAGACAGCTACTCAGCTGTGTACATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACCCAGTTTCTACTCTTCAGACAGCTACTCAGCTGTGTACATGGG  600

seq1  TTCTGAGCGCTACAGTTCTCGGCCATGGAAATAAACGCATTCAAAAATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCGCTACAGTTCTCGGCCATGGAAATAAACGCATTCAAAAATCG  650

seq1  TAGGTCTCTGCACCGTAAAGTGAGTGCGGTCTTGCGAGAAGAATGAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTCTGCACCGTAAAGTGAGTGCGGTCTTGCGAGAAGAATGAGTCT  700

seq1  GGTCCTGTTTGGGGCTCTACAGAGCATTTGGTGATAATCAGGGGAAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGTTTGGGGCTCTACAGAGCATTTGGTGATAATCAGGGGAAGACA  750

seq1  TGGCTTGCCTTTTGTGCCTCAGCTTTGTCCCTATAACCCCTCAGATAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCCTTTTGTGCCTCAGCTTTGTCCCTATAACCCCTCAGATAATA  800

seq1  GAATCTGCCCTTTAGGAGTCCAACCCTTTCCCGGGGGGGGGGGGGGGGG  849
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGCCCTTTAGGAGTCCAACCCTTTCCCGGGGGGGGGGGGGGGGG  849

seq1: chr8_110314972_110316112
seq2: B6Ng01-318B19.g_65_1203 (reverse)

seq1  GGTGCCTTCA-GCA-ACAGGGAGGTGTT-CAAAGACA-ACAGCAA--TCG  44
      |||||||||| ||| ||| |   ||||| |||||||| |||| ||  |||
seq2  GGTGCCTTCAGGCATACACG--AGTGTTCCAAAGACACACAGGAAATTCG  48

seq1  CCTTGTTTTGAGAGTTA-TCTTCAAGTAACTTGACCAACAACATGAG--A  91
      | |  |||||||||||| ||||||||| |||||||  || |||||||   
seq2  CTTGTTTTTGAGAGTTATTCTTCAAGTTACTTGAC--ACCACATGAGGAG  96

seq1  GGTTTCTTGTGCCTGGCACTGGGGTTTTATTATATATTCTATGGGTCACA  141
      ||||||||||||||||||||||||  ||| |||||| ||||| |||||||
seq2  GGTTTCTTGTGCCTGGCACTGGGG--TTAATATATA-TCTAT-GGTCACA  142

seq1  TGGAGGAGCAATGTCAGCCCAGTGGCTTGATTTCACTTAAGATATGTGTG  191
      ||   ||||||||||||||||||||| |||||||||||||||||||||||
seq2  TG--AGAGCAATGTCAGCCCAGTGGC-TGATTTCACTTAAGATATGTGTG  189

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGAGTGTATGTATAAT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGAGTGTATGTATAAT  239

seq1  TTCATTTAATATGTTTGTGTGTCTGTGTGTGTATAATTGGTACAAATAGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAATATGTTTGTGTGTCTGTGTGTGTATAATTGGTACAAATAGA  289

seq1  GAATATGGCTCCTTAAGGCTTTTTCAAACATCCTTAGTATTATTTGTCCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGGCTCCTTAAGGCTTTTTCAAACATCCTTAGTATTATTTGTCCT  339

seq1  TTCTCTCTCCTCCTCCTTCTGTATTGACCTCCAAAATCCTGTCTATCTAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCCTCCTCCTTCTGTATTGACCTCCAAAATCCTGTCTATCTAT  389

seq1  CCATGCAGGTTGTTTACATTGTATCTTTGAAAAGGCCAGGATGCTATGCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAGGTTGTTTACATTGTATCTTTGAAAAGGCCAGGATGCTATGCC  439

seq1  TCTTAGTTACACAGTGGATTTCCAAGTATTTACTTGACTAAAGGAGCTTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTACACAGTGGATTTCCAAGTATTTACTTGACTAAAGGAGCTTG  489

seq1  GGAACAGATTTTTTTTCTCTCCTGTCACTTTGACACACTGGCAAATTCTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGATTTTTTTTCTCTCCTGTCACTTTGACACACTGGCAAATTCTC  539

seq1  AGAAAACCTGCATCTGCCCGGACATGACAAGTCAGGAGGTTTGCTTCACT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTGCATCTGCCCGGACATGACAAGTCAGGAGGTTTGCTTCACT  589

seq1  GTAGTGGAATTTTAAAAGCTTGTCCTCCCTCTCATTTATTTAGTTTGTTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGAATTTTAAAAGCTTGTCCTCCCTCTCATTTATTTAGTTTGTTC  639

seq1  AAACTAACAAACACTTGCAAGTAGGTCAGCGCTACCTCTGCGGAACAGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACAAACACTTGCAAGTAGGTCAGCGCTACCTCTGCGGAACAGAG  689

seq1  CATTTTTCTAGAAATGACTAGAATGGTGAGAAAGGCGGAAGTTCTGGAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTAGAAATGACTAGAATGGTGAGAAAGGCGGAAGTTCTGGAGA  739

seq1  TGGGGCATCAGATGGTGGTTAATGCTCACCATGGCTTTGTCCCAGCTGCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATCAGATGGTGGTTAATGCTCACCATGGCTTTGTCCCAGCTGCC  789

seq1  AGTGTTGGGGATATGGAAGATGCTAGACCCATTATTAAGTCTGTTGTAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGGGATATGGAAGATGCTAGACCCATTATTAAGTCTGTTGTAGA  839

seq1  GCAGGCAAGAATGGGGGCAGTCATGGGAATCAGGGAAGAGAGTGGCTGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAGAATGGGGGCAGTCATGGGAATCAGGGAAGAGAGTGGCTGAG  889

seq1  GGACTTTCTCTGGTTAGCGCATCTGAAACTTGTCACATTTACTACCCATC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTCTCTGGTTAGCGCATCTGAAACTTGTCACATTTACTACCCATC  939

seq1  CCCTGAATCTGTGACACCAGATCCATTGAAGACGGATTACTGTTGTCACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATCTGTGACACCAGATCCATTGAAGACGGATTACTGTTGTCACT  989

seq1  CTGGCAAGCTGTCATAGATTTTCAACAGAAAATAGAGACCACTTACAGCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGCTGTCATAGATTTTCAACAGAAAATAGAGACCACTTACAGCT  1039

seq1  TAGGCCATAATTCTTTTACGGGTTTTAAAAATGTTTAAGAAAGAAAGATC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCATAATTCTTTTACGGGTTTTAAAAATGTTTAAGAAAGAAAGATC  1089

seq1  TTGAGGGAAAAGGCAATGGATTGATGGAATGTTCGGGCCAAGAAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGAAAAGGCAATGGATTGATGGAATGTTCGGGCCAAGAAGAATTC  1139