BAC Information

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BAC

Clone NameB6Ng01-318C19
Chromosome8 (Build37)
Map Location 26,320,351 - 26,444,806
singlet/doubletdoublet
Overlap genenone
Upstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1
Downstream geneLOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318C19.bB6Ng01-318C19.g
ACCGA108130GA108131
length1,1071,112
definitionB6Ng01-318C19.b B6Ng01-318C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,443,715 - 26,444,806)(26,320,351 - 26,321,466)
sequence
gaattctcctaaggcaaaaaccaattattggtgcagggagcttctacaag
gcagtagtacctcacaaagcatcgaggctattgagcattgaaaacaactg
aattgtctaataatgggaggctggttaaatacattagggtccattcatgt
aatgacatcctctgctgctctggaattggtgtctagattaatgatgtgtg
aaatgctcacaatacactgcgagtttaaaaaagatgatcaaaaccagatg
caaactatggtgggggtcttttcgtgtttcttgttgttttgagataggct
tcttttatatggtccttgccgacctagaactgcctgtgtagttggcctca
aactcacagagaactgcttgcctctgcctcctgcctgttgagatgaaaga
tgagccaccacacccaacaaatgtgacacctttttaaaaagtgagtgtgc
atttatgcacatataagtaatatggagatgatttatgaatatattatagc
actcatactaataacattaactacttgcttagtaatgtcctggttctcat
gccccttctcagattataagtttattctcacaaaagtcatataaggccaa
tgctgctactatttcagtttttacagattaaaaaaattatggcctaaata
attcttgcacttgcctaagaaaatatagagccatgatccttacctgtgcc
tgctgatctcagacttgtgcagtttagtacagtttaaccataattattat
tgagcaagaatacacacacacacacacacacacacacacacacacacata
ttttccaatacagagtttctccatgtagccttggctgtcctagatgaggc
tggccttaaactcagagatccacctgcctctgcctcctgagtattggtat
gaaaggagtgtgctaccaccacctggcttatagaccaaaatattaaaagt
tggtggtatttcagccgactcttgctctctttgtgtggttgagaagtgaa
gaacttagcaagactaaggaagaccgctgaccttttgccagcttgacttt
ttttccttggcaattagttcaaggggtaatgcaaaccgatctcccccctc
ctgggca
gaattccaagacagcctgggctacagtagaaaacctgataaagaaataaa
cattaaaaagctttattttcagactggagagatgactcagtggttaagaa
cagcatttgttcttccagcggtcccaaagttcaattcccagcaaccacag
ggtggctcacaaccatctgtaatgggatctgatgctctcttctggcatgc
aggtgtatatacagataggacagtcatatacttaaaataaataaataaaa
taaaataagagttttattttccaatttggaagagggaggtgtatctcagc
cttagaatacatgcctagcacagctgaggtttagcactgcaagaaaaaaa
aaaaggaaagaaaggaaaaaaaggcatcttgggtagcacgctgaggctgg
ggaggtaagaaggggcattaagagctcaccccccacagagtactcctctg
gtgctctgtggagccaatggagaagttggcctatgatggtctgatgcaat
caactgcctggagaccaaagtgtgaaccctcattccaaggaggtgtttgc
ctcatgacccaagatgccacacaaaagaccccacccccacccaccccagg
tacgcctacggatgcaaagggtagtcctcaaagacaaaacttcaggccag
ggtataagacatgcacttcatgcaagagatgctaaaggccccatcctccc
atgctctcagtgggcactttctctctcaggatgcctctctatggctagct
tctgagaaagcaaagcaaagagggagctgatactgtaggcctgtaaccaa
aataccaggaggagggataggtgggattcttagaagccagcaagggcttc
gaggcaaggctgtctaaatgcacagggataaaggaaaaccaggaagcacc
catgagccctgggtcaggattgttgcggaaatattaaaaaaatggatcct
gccagcacttctgcggggccttaccacgctctgctgccaccatcaactct
ctccagctagccccctgagcacctgtgcttgcttgtcctgagcttgttca
ggaccagctagtacttcctctggcattagccaatgttagcctgcgaatca
cgtccagtaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26443715_26444806
seq2: B6Ng01-318C19.b_44_1150 (reverse)

seq1  TGCCC---AGAGGGGAGATCGG-TTGCATT-CCCCT--GACTAATTGCAA  43
      |||||   || ||||||||||| ||||||| |||||   ||||||||| |
seq2  TGCCCAGGAGGGGGGAGATCGGTTTGCATTACCCCTTGAACTAATTGCCA  50

seq1  AG---AAAAAGTC-AGCTG--CAAAGGTCAGC-GTCTTCC-TAGTCTTGC  85
      ||   |||||||| |||||   |||||||||| ||||||| |||||||||
seq2  AGGAAAAAAAGTCAAGCTGGCAAAAGGTCAGCGGTCTTCCTTAGTCTTGC  100

seq1  T-AGTTCTTCACTTCTCAACCACACAAAGAGAGCAAGAGTCGCCTGAAAT  134
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAGTTCTTCACTTCTCAACCACACAAAGAGAGCAAGAGTCGGCTGAAAT  150

seq1  ACCACCAACCTTTTAATATTTTGGTCTATAAGCCAGGTGGTGGTAGCACA  184
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAA-CTTTTAATATTTTGGTCTATAAGCCAGGTGGTGGTAGCACA  199

seq1  CTCCTTTCATACCAATACTCAGGAGGCAGAGGCAGGTGGATCTCTGAGTT  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCATACCAATACTCAGGAGGCAGAGGCAGGTGGATCTCTGAGTT  249

seq1  TAAGGCCAGCCTCATCTAGGACAGCCAAGGCTACATGGAGAAACTCTGTA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCAGCCTCATCTAGGACAGCCAAGGCTACATGGAGAAACTCTGTA  299

seq1  TTGGAAAATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATT  349

seq1  CTTGCTCAATAATAATTATGGTTAAACTGTACTAAACTGCACAAGTCTGA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAATAATAATTATGGTTAAACTGTACTAAACTGCACAAGTCTGA  399

seq1  GATCAGCAGGCACAGGTAAGGATCATGGCTCTATATTTTCTTAGGCAAGT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCAGGCACAGGTAAGGATCATGGCTCTATATTTTCTTAGGCAAGT  449

seq1  GCAAGAATTATTTAGGCCATAATTTTTTTAATCTGTAAAAACTGAAATAG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATTATTTAGGCCATAATTTTTTTAATCTGTAAAAACTGAAATAG  499

seq1  TAGCAGCATTGGCCTTATATGACTTTTGTGAGAATAAACTTATAATCTGA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCATTGGCCTTATATGACTTTTGTGAGAATAAACTTATAATCTGA  549

seq1  GAAGGGGCATGAGAACCAGGACATTACTAAGCAAGTAGTTAATGTTATTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCATGAGAACCAGGACATTACTAAGCAAGTAGTTAATGTTATTA  599

seq1  GTATGAGTGCTATAATATATTCATAAATCATCTCCATATTACTTATATGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTGCTATAATATATTCATAAATCATCTCCATATTACTTATATGT  649

seq1  GCATAAATGCACACTCACTTTTTAAAAAGGTGTCACATTTGTTGGGTGTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATGCACACTCACTTTTTAAAAAGGTGTCACATTTGTTGGGTGTG  699

seq1  GTGGCTCATCTTTCATCTCAACAGGCAGGAGGCAGAGGCAAGCAGTTCTC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCATCTTTCATCTCAACAGGCAGGAGGCAGAGGCAAGCAGTTCTC  749

seq1  TGTGAGTTTGAGGCCAACTACACAGGCAGTTCTAGGTCGGCAAGGACCAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTGAGGCCAACTACACAGGCAGTTCTAGGTCGGCAAGGACCAT  799

seq1  ATAAAAGAAGCCTATCTCAAAACAACAAGAAACACGAAAAGACCCCCACC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAGCCTATCTCAAAACAACAAGAAACACGAAAAGACCCCCACC  849

seq1  ATAGTTTGCATCTGGTTTTGATCATCTTTTTTAAACTCGCAGTGTATTGT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGCATCTGGTTTTGATCATCTTTTTTAAACTCGCAGTGTATTGT  899

seq1  GAGCATTTCACACATCATTAATCTAGACACCAATTCCAGAGCAGCAGAGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTCACACATCATTAATCTAGACACCAATTCCAGAGCAGCAGAGG  949

seq1  ATGTCATTACATGAATGGACCCTAATGTATTTAACCAGCCTCCCATTATT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTACATGAATGGACCCTAATGTATTTAACCAGCCTCCCATTATT  999

seq1  AGACAATTCAGTTGTTTTCAATGCTCAATAGCCTCGATGCTTTGTGAGGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTCAGTTGTTTTCAATGCTCAATAGCCTCGATGCTTTGTGAGGT  1049

seq1  ACTACTGCCTTGTAGAAGCTCCCTGCACCAATAATTGGTTTTTGCCTTAG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGCCTTGTAGAAGCTCCCTGCACCAATAATTGGTTTTTGCCTTAG  1099

seq1  GAGAATTC  1092
      ||||||||
seq2  GAGAATTC  1107

seq1: chr8_26320351_26321466
seq2: B6Ng01-318C19.g_63_1174

seq1  GAATTCCAAGACAGCCTGGGCTACAGTAGAAAACCTGATAAAGAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACAGCCTGGGCTACAGTAGAAAACCTGATAAAGAAATAAA  50

seq1  CATTAAAAAGCTTTATTTTCAGACTGGAGAGATGACTCAGTGGTTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAAGCTTTATTTTCAGACTGGAGAGATGACTCAGTGGTTAAGAA  100

seq1  CAGCATTTGTTCTTCCAGCGGTCCCAAAGTTCAATTCCCAGCAACCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGTTCTTCCAGCGGTCCCAAAGTTCAATTCCCAGCAACCACAG  150

seq1  GGTGGCTCACAACCATCTGTAATGGGATCTGATGCTCTCTTCTGGCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAACCATCTGTAATGGGATCTGATGCTCTCTTCTGGCATGC  200

seq1  AGGTGTATATACAGATAGGACAGTCATATACTTAAAATAAATAAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATATACAGATAGGACAGTCATATACTTAAAATAAATAAATAAAA  250

seq1  TAAAATAAGAGTTTTATTTTCCAATTTGGAAGAGGGAGGTGTATCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGAGTTTTATTTTCCAATTTGGAAGAGGGAGGTGTATCTCAGC  300

seq1  CTTAGAATACATGCCTAGCACAGCTGAGGTTTAGCACTGCAAGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATACATGCCTAGCACAGCTGAGGTTTAGCACTGCAAGAAAAAAA  350

seq1  AAAAGGAAAGAAAGGAAAAAAAGGCATCTTGGGTAGCACGCTGAGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAGAAAGGAAAAAAAGGCATCTTGGGTAGCACGCTGAGGCTGG  400

seq1  GGAGGTAAGAAGGGGCATTAAGAGCTCACCCCCCACAGAGTACTCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAGAAGGGGCATTAAGAGCTCACCCCCCACAGAGTACTCCTCTG  450

seq1  GTGCTCTGTGGAGCCAATGGAGAAGTTGGCCTATGATGGTCTGATGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGTGGAGCCAATGGAGAAGTTGGCCTATGATGGTCTGATGCAAT  500

seq1  CAACTGCCTGGAGACCAAAGTGTGAACCCTCATTCCAAGGAGGTGTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCTGGAGACCAAAGTGTGAACCCTCATTCCAAGGAGGTGTTTGC  550

seq1  CTCATGACCCAAGATGCCACACAAAAGACCCCACCCCCACCCACCCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACCCAAGATGCCACACAAAAGACCCCACCCCCACCCACCCCAGG  600

seq1  TACGCCTACGGATGCAAAGGGTAGTCCTCAAAGACAAAACTTCAGGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCTACGGATGCAAAGGGTAGTCCTCAAAGACAAAACTTCAGGCCAG  650

seq1  GGTATAAGACATGCACTTCATGCAAGAGATGCTAAAGGCCCCATCCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAGACATGCACTTCATGCAAGAGATGCTAAAGGCCCCATCCTCCC  700

seq1  ATGCTCTCAGTGGGCACTTTCTCTCTCAGGATGCCTCTCTATGGCTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCAGTGGGCACTTTCTCTCTCAGGATGCCTCTCTATGGCTAGCT  750

seq1  TCTGAGAAAGCAAAGCAAAGAGGGAGCTGATACTGTAGGCCTGTAACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAAGCAAAGCAAAGAGGGAGCTGATACTGTAGGCCTGTAACCAA  800

seq1  AATACCAGGAGGAGGGATAGGTGGGA-TCTTAGAAGCCAGCAAGGGCTTC  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATACCAGGAGGAGGGATAGGTGGGATTCTTAGAAGCCAGCAAGGGCTTC  850

seq1  GAGGCAAGGCTGTCTAAATGCACAGGGATAAAGGAAAACCAGGAAGCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGGCTGTCTAAATGCACAGGGATAAAGGAAAACCAGGAAGCACC  900

seq1  CATGAGCCCTGGGTCAGGATTGTTGCGGGAAATATT-AAAAAATGGATCC  948
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  CATGAGCCCTGGGTCAGGATTGTTGC-GGAAATATTAAAAAAATGGATCC  949

seq1  TGCCAGCAC-TCTGCGGGGCCTTACCACGCTCCTGCTGCCACCATCAACT  997
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  TGCCAGCACTTCTGCGGGGCCTTACCACGCT-CTGCTGCCACCATCAACT  998

seq1  CTCTCCAGCTAGCCCCCTGAAGCACCTGTGGCTTGCTTGTCCCGGGAGC-  1046
      ||||||||||||||||||| ||||||||| ||||||||||||   |||| 
seq2  CTCTCCAGCTAGCCCCCTG-AGCACCTGT-GCTTGCTTGTCC--TGAGCT  1044

seq1  TGTCCGGGGAACAGCTAGTACTTCCTCTGCCATAAACCCATG-TAGCTGG  1095
      ||| |  ||| |||||||||||||||||| ||| | || ||| ||||  |
seq2  TGTTC-AGGACCAGCTAGTACTTCCTCTGGCATTAGCCAATGTTAGCCTG  1093

seq1  CGATCCCACCTTCCAGTAACT  1116
      |||  |   | ||||||||||
seq2  CGAATC--ACGTCCAGTAACT  1112