BAC Information

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BAC

Clone NameB6Ng01-318F06
Chromosome8 (Build37)
Map Location 39,128,206 - 39,269,176
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
Downstream geneTusc3, LOC100038974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318F06.bB6Ng01-318F06.g
ACCGA108248GA108249
length1,1451,011
definitionB6Ng01-318F06.b B6Ng01-318F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,268,022 - 39,269,176)(39,128,206 - 39,128,779)
sequence
gaattctcaatactcagtatgttttctctactttactgaactctcagggt
caaattctcttgtgttcattttctcttctagagaagacaccctcccagac
tgtattttataaaacctagagagtcaattttgctgttcagcaatgattcc
ctctccctgacatgtcattcaaaaactcttgatagaatttagaggtatgg
gatgctcttaatcatctttctgaaatagaaagccctaagctcttcaggtt
agcttacaaaatgtatcgtttctttcattttcaattcattttcattcttt
gagatttcatgtctacataaaatgtattgtgattaaatctatcacatttc
atctcctcaaatttatactctataccccaccagcacttttttactgctta
ttccccctttaaaaaaaaaactactgaattaatttagtaccacatgtata
tgcataaatatagaaccatctcttgaagattggtaccctctaataggttg
atgtattgctttaaaaaaaagagaagcctgatttctctcacctaatagcc
atcatagctcctcaactaggggtcagactttaagattccctcctctatct
attttggtattttagccaccttctcatatagacgcatctctttagggaag
ttgggttcaggacctttcaggacattacaaaagtgttctatctgggtttt
cataagtgaaagacttgaactgggctggacaatcatctttcaatacaaat
taatcattggtccataagtcaatgctggcaaacagagttctctaaagaag
aactctcaatgataatcatacctctttaataaacatgtaagaaattttat
cctataccatgttacatatggataagtttaacttgtttttatcattgatg
ggcatggtcttagaagtcatgtatattttcttcaaacataatctatagag
atggtatttagtatgtagctcttacattacccaaagacatgggaaagaga
tcaaaaacctatgggcccattttaatgtaagtctacagagtgtgatgctc
atactgttagtattataagttaccttatggtatatgtctaaggttatcag
ctacctggactcattgagctaatatatgattatatattggtccca
gaattcactgagcacatgaagatcaagaagaaggaagatcaaagttctgg
atgctttggtcctttttagaaagagaacaaaatactcacaggagcatata
tggagataaaatatagagcagaggctgaaggaaaggccatccagagactg
tcacacctggagattcatcccataaacagttaccaaacacagacactatt
gtggatgccaagaaatgcatgttgaaatgagcctggaatgggtgtcttct
tagaggacctgccacagccttacaaatacagaggtggatgctcatagtca
accattaaactgagtgctgcatccccaatagagaagttagagaaagatcc
atagaggaattttaatccaccaaatggctgctctagcaaataatcacatc
caaagaccttctaagtgtgttatacagctgaaatatagacatgctcagta
catacctttaatctcaaataatgaagttagtttgtagaaggatgtagcca
tgtttgaaagtgatgtgaattgagtggcagaaaaagggactaatcagaga
attagtcagatttcagatttgacagaatgagtcagagataggatatgccc
aactcattcaaatagacaagaaaagggacagagtgaaagagacagagagg
aggcagttttatcaggacagttttaacagagacaagttgaggtaatgata
gagttagccagagtatataagaaggatacagaagattagaatagattgcc
agattcagtttgatgaaggcagagcaattcaaatgcattttaagttagtc
tgcatgtagaggcctctgggacagaagtgctgatttgaaacagctaacca
tagttcagaaagagctagaaagggtgggtttactcagcagcaagcccttc
aagatgacaattctggtaatcatggtcacttttacaggcatcaatccacc
ttactcatcatataacatcatttccaataatttcaatcttggtttttctt
ctttatgccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39268022_39269176
seq2: B6Ng01-318F06.b_45_1189 (reverse)

seq1  TGGGAC---AATATAATCA-ATATATACTCATTGAGTCCAGGTAGGCTAG  46
      ||||||    ||||||||| ||||   |||| |||||||||||| ||| |
seq2  TGGGACCAATATATAATCATATATTAGCTCAATGAGTCCAGGTA-GCT-G  48

seq1  ATAAC--TAGACATATA-CATAAGTACATAAATAAAAACACTAAACAGTA  93
      |||||  |||||||||| ||||||    ||| | | || ||| |||||||
seq2  ATAACCTTAGACATATACCATAAG---GTAACTTATAATACT-AACAGTA  94

seq1  TGAGCATTCAACACTCTGTAAGACTTTACATTTAAAATGGCCCATAGGTT  143
      |||||||   ||||||||| |||| ||||||| |||  ||||||||||  
seq2  TGAGCAT--CACACTCTGT-AGAC-TTACATTAAAATGGGCCCATAGG--  138

seq1  TTTTTGATTCTTCTTTCCCATGTCTTTGGGTAATGTAAGAGCTTACATAC  193
      ||||||||   ||||||||||||||||||||||||||||||| |||||||
seq2  TTTTTGAT--CTCTTTCCCATGTCTTTGGGTAATGTAAGAGC-TACATAC  185

seq1  TAAATACCATCTTCTATAGATTATGTTTGAAGAAAATATACATGACTTCT  243
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCATC-TCTATAGATTATGTTTGAAGAAAATATACATGACTTCT  234

seq1  AAGACCATGCCCATCAATGATAAAAACAAGTTAAACTTATCCATATGTAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATGCCCATCAATGATAAAAACAAGTTAAACTTATCCATATGTAA  284

seq1  CATGGTATAGGATAAAATTTCTTACATGTTTATTAAAGAGGTATGATTAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATAGGATAAAATTTCTTACATGTTTATTAAAGAGGTATGATTAT  334

seq1  CATTGAGAGTTCTTCTTTTAGAGAACTCTGTTTGCCAGCATTGACTTATG  393
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATTGAGAGTTCTTC-TTTAGAGAACTCTGTTTGCCAGCATTGACTTATG  383

seq1  GACCAATGATTAATTTGTATTGAAAGATGATTGTCCAGCCCAGTTCAAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGATTAATTTGTATTGAAAGATGATTGTCCAGCCCAGTTCAAGT  433

seq1  CTTTCACTTATGAAAACCCAGATAGAACACTTTTGTAATGTCCTGAAAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTTATGAAAACCCAGATAGAACACTTTTGTAATGTCCTGAAAGG  483

seq1  TCCTGAACCCAACTTCCCTAAAGAGATGCGTCTATATGAGAAGGTGGCTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACCCAACTTCCCTAAAGAGATGCGTCTATATGAGAAGGTGGCTA  533

seq1  AAATACCAAAATAGATAGAGGAGGGAATCTTAAAGTCTGACCCCTAGTTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAAAATAGATAGAGGAGGGAATCTTAAAGTCTGACCCCTAGTTG  583

seq1  AGGAGCTATGATGGCTATTAGGTGAGAGAAATCAGGCTTCTCTTTTTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTATGATGGCTATTAGGTGAGAGAAATCAGGCTTCTCTTTTTTTT  633

seq1  AAAGCAATACATCAACCTATTAGAGGGTACCAATCTTCAAGAGATGGTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATACATCAACCTATTAGAGGGTACCAATCTTCAAGAGATGGTTC  683

seq1  TATATTTATGCATATACATGTGGTACTAAATTAATTCAGTAGTTTTTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATGCATATACATGTGGTACTAAATTAATTCAGTAGTTTTTTTT  733

seq1  TTAAAGGGGGAATAAGCAGTAAAAAAGTGCTGGTGGGGTATAGAGTATAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGGGGAATAAGCAGTAAAAAAGTGCTGGTGGGGTATAGAGTATAA  783

seq1  ATTTGAGGAGATGAAATGTGATAGATTTAATCACAATACATTTTATGTAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGAGATGAAATGTGATAGATTTAATCACAATACATTTTATGTAG  833

seq1  ACATGAAATCTCAAAGAATGAAAATGAATTGAAAATGAAAGAAACGATAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAATCTCAAAGAATGAAAATGAATTGAAAATGAAAGAAACGATAC  883

seq1  ATTTTGTAAGCTAACCTGAAGAGCTTAGGGCTTTCTATTTCAGAAAGATG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAAGCTAACCTGAAGAGCTTAGGGCTTTCTATTTCAGAAAGATG  933

seq1  ATTAAGAGCATCCCATACCTCTAAATTCTATCAAGAGTTTTTGAATGACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGCATCCCATACCTCTAAATTCTATCAAGAGTTTTTGAATGACA  983

seq1  TGTCAGGGAGAGGGAATCATTGCTGAACAGCAAAATTGACTCTCTAGGTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGAGAGGGAATCATTGCTGAACAGCAAAATTGACTCTCTAGGTT  1033

seq1  TTATAAAATACAGTCTGGGAGGGTGTCTTCTCTAGAAGAGAAAATGAACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATACAGTCTGGGAGGGTGTCTTCTCTAGAAGAGAAAATGAACA  1083

seq1  CAAGAGAATTTGACCCTGAGAGTTCAGTAAAGTAGAGAAAACATACTGAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAATTTGACCCTGAGAGTTCAGTAAAGTAGAGAAAACATACTGAG  1133

seq1  TATTGAGAATTC  1155
      ||||||||||||
seq2  TATTGAGAATTC  1145

seq1: chr8_39128206_39128779
seq2: B6Ng01-318F06.g_504_1076

seq1  ACATGCTCAGTACATACCTTTAATCTCAAATAATGAAGTTAGTTTGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCAGTACATACCTTTAATCTCAAATAATGAAGTTAGTTTGTAGA  50

seq1  AGGATGTAGCCATGTTTGAAAGTGATGTGAATTGAGTGGCAGAAAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTAGCCATGTTTGAAAGTGATGTGAATTGAGTGGCAGAAAAAGGG  100

seq1  ACTAATCAGAGAATTAGTCAGATTTCAGATTTGACAGAATGAGTCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCAGAGAATTAGTCAGATTTCAGATTTGACAGAATGAGTCAGAGA  150

seq1  TAGGATATGCCCAACTCATTCAAATAGACAAGAAAAGGGACAGAGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATGCCCAACTCATTCAAATAGACAAGAAAAGGGACAGAGTGAAA  200

seq1  GAGACAGAGAGGAGGCAGTTTTATCAGGACAGTTTTAACAGAGACAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGGAGGCAGTTTTATCAGGACAGTTTTAACAGAGACAAGTT  250

seq1  GAGGTAATGATAGAGTTAGCCAGAGTATATAAGAAGGATACAGAAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATGATAGAGTTAGCCAGAGTATATAAGAAGGATACAGAAGATTA  300

seq1  GAATAGATTGCCAGATTCAGTTTGATGAAGGCAGAGCAATTCAAATGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATTGCCAGATTCAGTTTGATGAAGGCAGAGCAATTCAAATGCAT  350

seq1  TTTAAGTTAGTCTGCATGTAGAGGCCTCTGGGACAGAAGTGCTGATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTAGTCTGCATGTAGAGGCCTCTGGGACAGAAGTGCTGATTTGA  400

seq1  AACAGCTAACCATAGTTCAGAAAGAGCTAGAAAGGGTGGGTTTACTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTAACCATAGTTCAGAAAGAGCTAGAAAGGGTGGGTTTACTCAGC  450

seq1  AGCAAG-CCTTCAAGATGACAATTCTGGTAAATCATGGTCACTTTTACAG  499
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCAAGCCCTTCAAGATGACAATTCTGGT-AATCATGGTCACTTTTACAG  499

seq1  GCATCAATCCACCTTACTCCATCATATAACATCA-TTCCAATAATTTCAA  548
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  GCATCAATCCACCTTACT-CATCATATAACATCATTTCCAATAATTTCAA  548

seq1  TCTTTGTTTTTCTTCCTTTATGCCAA  574
      |||| ||||||||| |||||||||||
seq2  TCTTGGTTTTTCTT-CTTTATGCCAA  573