BAC Information

Click to search

BAC

Clone NameB6Ng01-319G07
Chromosome8 (Build37)
Map Location 38,299,293 - 38,385,731
singlet/doubletdoublet
Overlap genenone
Upstream geneLonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
Downstream geneLOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319G07.bB6Ng01-319G07.g
ACCGA109035GA109036
length1,0861,163
definitionB6Ng01-319G07.b B6Ng01-319G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,299,293 - 38,300,374)(38,384,566 - 38,385,731)
sequence
gaattcctttgggtaccatagtgtttgtaatgagaaaattgaaagtctct
gaagccaaagggcttggcctctggagccagaaaatgctgttttttgtctc
aagggtggagcccagatgtctatcacagcacttttggtaacagggtgctc
tctctcctgcccaaatatgtcatcagtccctttctgatgtcttgctgaaa
tatatattagagaaactctgaagtagttatccatttcattatgtctggaa
aacgtccagatacaggtgcatgaattaaatcagttattcgtgtatcaatt
caagcatgaagttcaaactcactggaagccacaaattatatgcttgagaa
agcttctgcagtttcagaaagatgtgtacttgactgctggaagaaggaaa
aggacacaagagagccaagttcactcttgtctgctggcatcttactgatg
gctcagattgcatcccaaggataattccgaagggcaagagacaacgcagg
gcaagtagtgccttcaaaatttctcatccctaaatgtgtatatgttgtag
cctgacttagcagccctagaaaaggcctgggactcttttataaattagaa
tgttgattttaaaggaaaaatgctttttttttgtttgtttgtttttgttt
ttgttcgtttgtttgtttgtttgtttgtttgttttacccacaatgtttgg
gaagcttgaaaagtaaggaattcggttcctgaacagagttctgtctattt
accagcgttctgtaactttagattttttctagaagtaattataaaatctt
aaaaaaaaaatgcttatagcacattgcttggctcttgtaacaagtaatag
agattaaaatataagcttgctagtgctgtagctaatagaattgagtcact
agcttttatctactttttttttctcataggtcattttactagggatatga
aaaccattattgacaagacagtcttatatctatcagcacatagtccacta
gttttttgatagaaccattaataattattgatagcctaagagatgcggag
attagggtttttttatttctggaatatttctatatg

gaattccaaagaagaaaatgtttccaacagattgcctgtgggcaagttta
tctgaccttttcttgattagtggatgatttgggggggcccccattccagt
gggtgaaaggtaacccctgggcaggtagttcagtttgttataagaaagtg
aactgagcaagacacagagattaagcaagtaagcagtgctcctctataat
taacttctgcttcagttccctcctccaggtcctgccttgaattcctccct
ggattccctcagtgatggaccatgctatataaacataagccgaataagcc
ttttcttcctgatgtttcttttggccatagtgtcttatcatcataataga
aagccttcacggatgatggtttaattagttttcctacagaagccacaatt
ttattctttatgattgaagaaaaattcagtgtgtgaaagtaccatgtttt
ctctatccagcaacatccactgataggtatctaaattggtcttgtacctg
gctattgagaagactgcttcaataaagatgattgtgtagaaatctctact
atatacctgttataaaaataaagatgcttctgagagatagaacagaaaaa
catgtctgttctataaactcatacgaattatggctatcatgtgacccata
gagtaatacaaggaaagagttttcattgctcgttgaaagataatgtgtgg
aaaggcagggaagatatacgctactgtaatcttactaagaagtaaaacat
aaattggcacatcatcctttaagaagcctaagcaatctggtaaagataga
gaaaatagatagctgagctaataaacaaattatgcagcccatatgtactt
tgagctgtctcttccagaaatttttggaagattgataatatgtaatatcc
atgactctggtggtggtcattgattacgtgaaacaatagaatggttagca
agtccacatcgtggatatttgacaaatgttcttttgtcaatactcaaata
tattctagcagcttttctggtgtatctactagaaaagaatagtgaaagat
gagaaataatcatacactgtctctatagtatcaaaatggtcaataaatac
aagttttggaattctgacttagtgttaagttcacttccctcgaaaattgg
aaacactgtgcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38299293_38300374
seq2: B6Ng01-319G07.b_47_1132

seq1  GAATTCCTTTGGGTACCATAGTGTTTGTAATGAGAAAATTGAAAGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGGGTACCATAGTGTTTGTAATGAGAAAATTGAAAGTCTCT  50

seq1  GAAGCCAAAGGGCTTGGCCTCTGGAGCCAGAAAATGCTGTTTTTTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAAAGGGCTTGGCCTCTGGAGCCAGAAAATGCTGTTTTTTGTCTC  100

seq1  AAGGGTGGAGCCCAGATGTCTATCACAGCACTTTTGGTAACAGGGTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGAGCCCAGATGTCTATCACAGCACTTTTGGTAACAGGGTGCTC  150

seq1  TCTCTCCTGCCCAAATATGTCATCAGTCCCTTTCTGATGTCTTGCTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGCCCAAATATGTCATCAGTCCCTTTCTGATGTCTTGCTGAAA  200

seq1  TATATATTAGAGAAACTCTGAAGTAGTTATCCATTTCATTATGTCTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTAGAGAAACTCTGAAGTAGTTATCCATTTCATTATGTCTGGAA  250

seq1  AACGTCCAGATACAGGTGCATGAATTAAATCAGTTATTCGTGTATCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCCAGATACAGGTGCATGAATTAAATCAGTTATTCGTGTATCAATT  300

seq1  CAAGCATGAAGTTCAAACTCACTGGAAGCCACAAATTATATGCTTGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGAAGTTCAAACTCACTGGAAGCCACAAATTATATGCTTGAGAA  350

seq1  AGCTTCTGCAGTTTCAGAAAGATGTGTACTTGACTGCTGGAAGAAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGCAGTTTCAGAAAGATGTGTACTTGACTGCTGGAAGAAGGAAA  400

seq1  AGGACACAAGAGAGCCAAGTTCACTCTTGTCTGCTGGCATCTTACTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAAGAGAGCCAAGTTCACTCTTGTCTGCTGGCATCTTACTGATG  450

seq1  GCTCAGATTGCATCCCAAGGATAATTCCGAAGGGCAAGAGACAACGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGATTGCATCCCAAGGATAATTCCGAAGGGCAAGAGACAACGCAGG  500

seq1  GCAAGTAGTGCCTTCAAAATTTCTCATCCCTAAATGTGTATATGTTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAGTGCCTTCAAAATTTCTCATCCCTAAATGTGTATATGTTGTAG  550

seq1  CCTGACTTAGCAGCCCTAGAAAAGGCCTGGGACTCTTTTATAAATTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTAGCAGCCCTAGAAAAGGCCTGGGACTCTTTTATAAATTAGAA  600

seq1  TGTTGATTTTAAAGGAAAAATGCTTTTTTTTTGTTTGTTTGTTTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTTTAAAGGAAAAATGCTTTTTTTTTGTTTGTTTGTTTTTGTTT  650

seq1  TTGTTCGTTTGTTTGTTTGTTTGTTTGTTTGTTTTACCCACAATGTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCGTTTGTTTGTTTGTTTGTTTGTTTGTTTTACCCACAATGTTTGG  700

seq1  GAAGCTTGAAAAGTAAGGAATTCGGTTCCTGAACAGAGTTCTGTCTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTGAAAAGTAAGGAATTCGGTTCCTGAACAGAGTTCTGTCTATTT  750

seq1  ACCAGCGTTCTGTAACTTTAGATTTTTTCTAGAAGTAATTATAAAATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCGTTCTGTAACTTTAGATTTTTTCTAGAAGTAATTATAAAATCTT  800

seq1  -AAAAAAAAATGCTTATAGCACATTGCTTGGCTCTTGTAACAAGTAATAG  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATGCTTATAGCACATTGCTTGGCTCTTGTAACAAGTAATAG  850

seq1  AGATTAAAATATAAGCTTGCTAGTGCTGTAGCTAATAGAATTGAGTCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAATATAAGCTTGCTAGTGCTGTAGCTAATAGAATTGAGTCACT  900

seq1  AGCTTTTATCTACTTTTTTTTTCTCATAGGTCATTTTACTA-GGATATGA  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCTTTTATCTACTTTTTTTTTCTCATAGGTCATTTTACTAGGGATATGA  950

seq1  AAACCATTATTGACAAGACAGTCTTATATCTATCAGCACATAGTCCACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTATTGACAAGACAGTCTTATATCTATCAGCACATAGTCCACTA  1000

seq1  GTTTTTTGATAGAACCAATTAATAATTA-TGATAG-CTAAGAGATGAAGG  1046
      |||||||||||||||| ||||||||||| |||||| ||||||||||  ||
seq2  GTTTTTTGATAGAACC-ATTAATAATTATTGATAGCCTAAGAGATG-CGG  1048

seq1  AGATTAGGGGTTTTTTA-TTCTGG-ATATTTCTATATG  1082
      ||||||||| ||||||| |||||| |||||||||||||
seq2  AGATTAGGGTTTTTTTATTTCTGGAATATTTCTATATG  1086


seq1: chr8_38384566_38385731
seq2: B6Ng01-319G07.g_64_1226 (reverse)

seq1  TCGCA-AGTGTTTCCAAATCTGAAGGGAAAATTGACTAAACACTAAATCC  49
      ||||| ||||||||||| | |  |||| || |  ||| |||||||| | |
seq2  TCGCACAGTGTTTCCAATTTTCGAGGG-AAGTGAACTTAACACTAAGT-C  48

seq1  AGAATACCAAAA-TTGTA-TTATGAACCATTTTTGATACTTAATTAGAAG  97
      ||||| |||||| ||||| ||||  |||| ||||||||||    ||| ||
seq2  AGAATTCCAAAACTTGTATTTATTGACCA-TTTTGATACT---ATAG-AG  93

seq1  ACAGTGTTATGATTA-TTCTCATCTTTCAACTA-TCTTTCTAAGTAGATA  145
      |||||| |||||||| |||||||||||| |||| |||||   ||||||||
seq2  ACAGTG-TATGATTATTTCTCATCTTTC-ACTATTCTTTTCTAGTAGATA  141

seq1  CA-CAGAAAAGCTGCTAGAATATAATTGGAGTATTGAC-AAAGAACATTT  193
      || |||||||||||||||||||| ||| |||||||||| |||||||||||
seq2  CACCAGAAAAGCTGCTAGAATAT-ATTTGAGTATTGACAAAAGAACATTT  190

seq1  GTCAAATATCCACGATGTGGACTTGCTAACCATTCTATTGTTTCACGTAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATATCCACGATGTGGACTTGCTAACCATTCTATTGTTTCACGTAA  240

seq1  TCAATGACCACCACCAGAGTCATGGATATTACATATTATCAATCTTCCAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACCACCACCAGAGTCATGGATATTACATATTATCAATCTTCCAA  290

seq1  AAATTTCTGGAAGAGACAGCTCAAAGTACATATGGGCTGCATAATTTGTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGGAAGAGACAGCTCAAAGTACATATGGGCTGCATAATTTGTT  340

seq1  TATTAGCTCAGCTATCTATTTTCTCTATCTTTACCAGATTGCTTAGGCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTCAGCTATCTATTTTCTCTATCTTTACCAGATTGCTTAGGCTT  390

seq1  CTTAAAGGATGATGTGCCAATTTATGTTTTACTTCTTAGTAAGATTACAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGATGATGTGCCAATTTATGTTTTACTTCTTAGTAAGATTACAG  440

seq1  TAGCGTATATCTTCCCTGCCTTTCCACACATTATCTTTCAACGAGCAATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTATATCTTCCCTGCCTTTCCACACATTATCTTTCAACGAGCAATG  490

seq1  AAAACTCTTTCCTTGTATTACTCTATGGGTCACATGATAGCCATAATTCG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTTCCTTGTATTACTCTATGGGTCACATGATAGCCATAATTCG  540

seq1  TATGAGTTTATAGAACAGACATGTTTTTCTGTTCTATCTCTCAGAAGCAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTTATAGAACAGACATGTTTTTCTGTTCTATCTCTCAGAAGCAT  590

seq1  CTTTATTTTTATAACAGGTATATAGTAGAGATTTCTACACAATCATCTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTTATAACAGGTATATAGTAGAGATTTCTACACAATCATCTTT  640

seq1  ATTGAAGCAGTCTTCTCAATAGCCAGGTACAAGACCAATTTAGATACCTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCAGTCTTCTCAATAGCCAGGTACAAGACCAATTTAGATACCTA  690

seq1  TCAGTGGATGTTGCTGGATAGAGAAAACATGGTACTTTCACACACTGAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGATGTTGCTGGATAGAGAAAACATGGTACTTTCACACACTGAAT  740

seq1  TTTTCTTCAATCATAAAGAATAAAATTGTGGCTTCTGTAGGAAAACTAAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCAATCATAAAGAATAAAATTGTGGCTTCTGTAGGAAAACTAAT  790

seq1  TAAACCATCATCCGTGAAGGCTTTCTATTATGATGATAAGACACTATGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCATCCGTGAAGGCTTTCTATTATGATGATAAGACACTATGGC  840

seq1  CAAAAGAAACATCAGGAAGAAAAGGCTTATTCGGCTTATGTTTATATAGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAACATCAGGAAGAAAAGGCTTATTCGGCTTATGTTTATATAGC  890

seq1  ATGGTCCATCACTGAGGGAATCCAGGGAGGAATTCAAGGCAGGACCTGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCATCACTGAGGGAATCCAGGGAGGAATTCAAGGCAGGACCTGGA  940

seq1  GGAGGGAACTGAAGCAGAAGTTAATTATAGAGGAGCACTGCTTACTTGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAACTGAAGCAGAAGTTAATTATAGAGGAGCACTGCTTACTTGCT  990

seq1  TAATCTCTGTGTCTTGCTCAGTTCACTTTCTTATAACAAACTGAACTACC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTGTGTCTTGCTCAGTTCACTTTCTTATAACAAACTGAACTACC  1040

seq1  TGCCCAGGGGTTACCTTTCACCCACTGGAATGGGGGCCCCCCCAAATCAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGGGTTACCTTTCACCCACTGGAATGGGGGCCCCCCCAAATCAT  1090

seq1  CCACTAATCAAGAAAAGGTCAGATAAACTTGCCCACAGGCAATCTGTTGG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATCAAGAAAAGGTCAGATAAACTTGCCCACAGGCAATCTGTTGG  1140

seq1  AAACATTTTCTTCTTTGGAATTC  1166
      |||||||||||||||||||||||
seq2  AAACATTTTCTTCTTTGGAATTC  1163


| Home | SequenceCutter | Blast | Download |