BAC Information

Click to search

BAC

Clone NameB6Ng01-320N24
Chromosome8 (Build37)
Map Location 77,159,165 - 77,160,308
singlet/doubletsinglet
Overlap genenone
Upstream geneCrry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320N24.bB6Ng01-320N24.g
ACCGA110132GA110133
length7981,151
definitionB6Ng01-320N24.b B6Ng01-320N24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatggttgttggatcttg
tcaaatgctttttcttcatctaacaagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggatactcgtatattaaacc
atctctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttttttgattcggttagcgagaattttattgagtatttttgc
atcgatattcataagataaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtataagagtaattgtggctttataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatcgttaacttgatcctaatttaactt
tggtacctggtatctgtatagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgtttggattt
ctttcaggatctgtttgttatgtctccctttttcatttctgattttgtta
attaggatttttgtccctttgcccctctagtgagtctagctaagggttta
tctatcctgttgattttctcgaagaaccaactccctcgtttggttaat

gaattcccaaattctgttataggagagagctgtgggaacctgtttttctg
atgtccttaatcctggcatctcagtttcagtacctatacaaaaccacagg
ctacaggttatacccaggactctgaggatgtgttcctcaagatgttttta
atttgcaagcatcagcagtattggcaacattagtaatacccaaacaatca
aataacaccaagaaagcttccaggttgacaaacactagaaagatgtggtg
ggaggcaaggacatgccagggtcctttgacacacagtgacagaaactgat
cagttgagtctgacaatcaagtacagtgatgtagaaaacaatcagaggtg
atgataccagccacttcattgtcttcatatccatctgtgtcaccttgtga
caggcctgttgttgaataacttccacaaaagtctttctttctactcagga
ttttagagattgagagttgatggttcctctggactgagctctgttcagct
ggtctgtactaggagtgctcatgaatgtgcatcagattagagagctggca
aggatggactgtttttggaatggccagatcaatacccgcttcttatctcc
atatggtttctgttctccagatggctagtctgggcttgatttcatggtgg
ctgggtttcccgagtagagaaaggtctaggagagtcagaaaaaaatactt
ttaaaaaaaattatttattttttacactccatattccattccccaaatct
cccaatccacccccccctgactgttacatattccaggcctcctctccacc
tcccctgtctccacatggatgcccccaatctccaccccacctgatctgta
actccctggggcctccattctcttgagtgttagtgcatcatctctgaatg
aacacagacccagaagtcctctactgtatgtgttttgggggtctcatatc
agctggtgtgtgctgtctgtttgggtaatccagtgttggagaggatctca
gtggttccagattaattgatcttcctacagtatcacctttccttcctcag
cttcttttcagccttcccttattcacaacaagggaatgccttgcttcatc
atggcctgggtgccaaatatctggcatctgagttttccatttgcctgttg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_77159165_77160308
seq2: B6Ng01-320N24.g_67_1217 (reverse)

seq1  CCAACAAGCAAATGAAAAACTCAGATG-CAGATATTT-GCACCCAGCCAA  48
      |||||| ||||||| |||||||||||| ||||||||| |||||||| | |
seq2  CCAACAGGCAAATGGAAAACTCAGATGCCAGATATTTGGCACCCAGGCCA  50

seq1  TGGATAGAAGCA--GCAT--CCCTGTTGTTGAATTAGGGAAGGCTG-AAA  93
      | ||| ||||||  ||||  || ||||| ||||| ||||||||||| |||
seq2  T-GAT-GAAGCAAGGCATTCCCTTGTTG-TGAATAAGGGAAGGCTGAAAA  97

seq1  GAAGCTGAGGA--GAAAGGTGATACTGTAGGAAGATCAATTAATCTGG-A  140
      |||||||||||  ||||||||||||||||||||||||||||||||||| |
seq2  GAAGCTGAGGAAGGAAAGGTGATACTGTAGGAAGATCAATTAATCTGGAA  147

seq1  CCACTGAGAT-CTCTCAAACACTGGATTA-CCAAACAGACAGCACACACC  188
      |||||||||| ||||| |||||||||||| ||||||||||||||||||||
seq2  CCACTGAGATCCTCTCCAACACTGGATTACCCAAACAGACAGCACACACC  197

seq1  AGCTGATATGAGACCCCCAAAACACATACAGTAGAGGACTTCTGGGTCTG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATATGAGACCCCCAAAACACATACAGTAGAGGACTTCTGGGTCTG  247

seq1  TGTTCATTCAGAGATGATGCACCTAACACTCAAGAGAATGGAGGCCCCAG  288
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTCATTCAGAGATGATGCA-CTAACACTCAAGAGAATGGAGGCCCCAG  296

seq1  GGAGTTTACAGATCAGGTGGGGTGGAGATTGGGGGCATCCATGTGGAGAC  338
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAG-TTACAGATCAGGTGGGGTGGAGATTGGGGGCATCCATGTGGAGAC  345

seq1  AGGGGAGGTGGAGAGGAGGCCTGGAATATGTAACAGTCAGGGGGGGGTGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGTGGAGAGGAGGCCTGGAATATGTAACAGTCAGGGGGGGGTGG  395

seq1  ATTGGGAGATTTGGGGAATGGAATATGGAGTGTAAAAAATAAATAATTTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAGATTTGGGGAATGGAATATGGAGTGTAAAAAATAAATAATTTT  445

seq1  TTTTAAAAGTATTTTTTTCTGACTCTCCTAGACCTTTCTCTACTCGGGAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTATTTTTTTCTGACTCTCCTAGACCTTTCTCTACTCGGGAA  495

seq1  ACCCAGCCACCATGAAATCAAGCCCAGACTAGCCATCTGGAGAACAGAAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCACCATGAAATCAAGCCCAGACTAGCCATCTGGAGAACAGAAA  545

seq1  CCATATGGAGATAAGAAGCGGGTATTGATCTGGCCATTCCAAAAACAGTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGGAGATAAGAAGCGGGTATTGATCTGGCCATTCCAAAAACAGTC  595

seq1  CATCCTTGCCAGCTCTCTAATCTGATGCACATTCATGAGCACTCCTAGTA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGCCAGCTCTCTAATCTGATGCACATTCATGAGCACTCCTAGTA  645

seq1  CAGACCAGCTGAACAGAGCTCAGTCCAGAGGAACCATCAACTCTCAATCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGCTGAACAGAGCTCAGTCCAGAGGAACCATCAACTCTCAATCT  695

seq1  CTAAAATCCTGAGTAGAAAGAAAGACTTTTGTGGAAGTTATTCAACAACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCCTGAGTAGAAAGAAAGACTTTTGTGGAAGTTATTCAACAACA  745

seq1  GGCCTGTCACAAGGTGACACAGATGGATATGAAGACAATGAAGTGGCTGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTCACAAGGTGACACAGATGGATATGAAGACAATGAAGTGGCTGG  795

seq1  TATCATCACCTCTGATTGTTTTCTACATCACTGTACTTGATTGTCAGACT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCACCTCTGATTGTTTTCTACATCACTGTACTTGATTGTCAGACT  845

seq1  CAACTGATCAGTTTCTGTCACTGTGTGTCAAAGGACCCTGGCATGTCCTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGATCAGTTTCTGTCACTGTGTGTCAAAGGACCCTGGCATGTCCTT  895

seq1  GCCTCCCACCACATCTTTCTAGTGTTTGTCAACCTGGAAGCTTTCTTGGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCACCACATCTTTCTAGTGTTTGTCAACCTGGAAGCTTTCTTGGT  945

seq1  GTTATTTGATTGTTTGGGTATTACTAATGTTGCCAATACTGCTGATGCTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGATTGTTTGGGTATTACTAATGTTGCCAATACTGCTGATGCTT  995

seq1  GCAAATTAAAAACATCTTGAGGAACACATCCTCAGAGTCCTGGGTATAAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTAAAAACATCTTGAGGAACACATCCTCAGAGTCCTGGGTATAAC  1045

seq1  CTGTAGCCTGTGGTTTTGTATAGGTACTGAAACTGAGATGCCAGGATTAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCTGTGGTTTTGTATAGGTACTGAAACTGAGATGCCAGGATTAA  1095

seq1  GGACATCAGAAAAACAGGTTCCCACAGCTCTCTCCTATAACAGAATTTGG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCAGAAAAACAGGTTCCCACAGCTCTCTCCTATAACAGAATTTGG  1145

seq1  GAATTC  1144
      ||||||
seq2  GAATTC  1151


| Home | SequenceCutter | Blast | Download |