BAC Information

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BAC

Clone NameB6Ng01-321B23
Chromosome8 (Build37)
Map Location 113,187,147 - 113,346,968
singlet/doubletdoublet
Overlap geneVac14, BC060632, 2010004A03Rik, Sf3b3
Upstream genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
Downstream geneCog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321B23.bB6Ng01-321B23.g
ACCGA110315GA110316
length1,1481,015
definitionB6Ng01-321B23.b B6Ng01-321B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,187,147 - 113,188,291)(113,345,950 - 113,346,968)
sequence
gaattctctggctgattccccaagccccagggcagcaagagccaagttat
atgtggtcagggatggaggaggcctggccactgagctataccctttataa
caaaaggaactagtttctatgtgggcagaagcagaaaacccaaggatcct
gtagaagccaagcctcgtgcctttgcccttcctgtcagatttgcttcaca
gcctgaggggcagcctgacccgacccagatcacctacagggcacgacagt
cagctgttctgcacagagacttcagatattccttggcattggctgacact
ggccagagtgcagcctccagagtctggagcagcatccatctctttcacca
atacaaagtatgcctcttgggaacattcttgcagcttactcccagccagc
gctagggagagcacagtctgggaatgtcctgacaatagaaagaaagagtc
cccttcaaaggagctggattgctctaccagttgacatcgaaagccttagc
tagtgcttgctgtgtaaacctagggcttcctaaggatcagtgggacctta
aagtgggatgtttgtccatctattcctttggcagcagctattccaaacta
tgcatcttttattttcttcccctatgctgcagatcttcctctatctgcta
agtgattgcctgggccttcagagccagagtgttggttagaggcaaggtca
ggctcccctgtgtggggacttgaacttgtagtgtttgtctgcaggctgta
gcagtatcaactgggacagaggaacaaccacagtgccatggaagggcaga
gggcaggtattagggtagtgaatgcccattagatcagtgaaagagaacag
cactgtccaggagagagccaccccttggttgctagaaaatgagtatgaca
gatgtcattatctacgtttatcctaaggaaaaagccaattgatactataa
agttgtctccaacaaagggatcatctgaggaatccctggtttttctctgc
tgtctaccccatgggaaatatgaagcccttttccgccaacttcccgaggc
tcccccttggagaacacccttgggcagattcttgtctgtacctcgcggtc
ttcagcctgaccttacagttccagcaagagtcagcagccccattgcac
gaattcctcccagttcataattgaccatgttagctctagtgtgtagaagc
ctgggtgtttttgtagccaaaggagatgagttttatcatggtacaaaaag
caggaatctagtgtaaactagcatcggtgctctcacggtgctatgtgcct
tacttcctgaatcaggacctgcaaagacttaagttagatggcagacttgt
gctttttcagttttagtttcatactttaaaatgcttgagcatgagacaca
caaatgagtcttcattttcccatttaaaggagtattttacagcaaatcta
gggcagtacctcttccctcctatacttagtaatgttatctctatagtgtt
ttgctttaagaaactagtaatgtcatacccaccaagattagtaacacttt
ctgaatatctgatactttgcatgttttaatttcctcgtgaaaaatcacag
ttagtgcagactatagacgttgacggcagttactcactcgtaactgttgt
agtggaagtggccctactctgttgcatcccactggaggtgcgtgatgttg
aaatgtttgtaatcaagtctgtaaattgaggtttattcctttgctctaaa
catactttatacaggaaaaggataatggctctctcccaaccccttcttca
gtcactaattttacagtaggagttaggattacagcagtcattctagttga
gtctgatgaagtagggattttgttggttggaggtagatttttatttttta
actatataaatttgtgggtattttcttcttcaaattactgtcatctctta
gattttttgtttgcttcatttttgattgtggtttcccttgaaattcgttt
gtttattttgacccagctatcttgcctgccttcttgcacaattaggtaac
tgttgcattgggaatgttcttgcttcagccttgaattagtcatccttgga
ccgtgttccttagggaaatgagcttaaaggtacatagtcagtacattcca
gcctttaattgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113187147_113188291
seq2: B6Ng01-321B23.b_46_1193

seq1  GAATTCTCTGGCTGATTCCCCAAGCCCCAGGGCAGCAAGAGCCAAGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCTGATTCCCCAAGCCCCAGGGCAGCAAGAGCCAAGTTAT  50

seq1  ATGTGGTCAGGGATGGAGGAGGCCTGGCCACTGAGCTATACCCTTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCAGGGATGGAGGAGGCCTGGCCACTGAGCTATACCCTTTATAA  100

seq1  CAAAAGGAACTAGTTTCTATGTGGGCAGAAGCAGAAAACCCAAGGATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAACTAGTTTCTATGTGGGCAGAAGCAGAAAACCCAAGGATCCT  150

seq1  GTAGAAGCCAAGCCTCGTGCCTTTGCCCTTCCTGTCAGATTTGCTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGCCAAGCCTCGTGCCTTTGCCCTTCCTGTCAGATTTGCTTCACA  200

seq1  GCCTGAGGGGCAGCCTGACCCGACCCAGATCACCTACAGGGCACGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGGGCAGCCTGACCCGACCCAGATCACCTACAGGGCACGACAGT  250

seq1  CAGCTGTTCTGCACAGAGACTTCAGATATTCCTTGGCATTGGCTGACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTCTGCACAGAGACTTCAGATATTCCTTGGCATTGGCTGACACT  300

seq1  GGCCAGAGTGCAGCCTCCAGAGTCTGGAGCAGCATCCATCTCTTTCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGTGCAGCCTCCAGAGTCTGGAGCAGCATCCATCTCTTTCACCA  350

seq1  ATACAAAGTATGCCTCTTGGGAACATTCTTGCAGCTTACTCCCAGCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGTATGCCTCTTGGGAACATTCTTGCAGCTTACTCCCAGCCAGC  400

seq1  GCTAGGGAGAGCACAGTCTGGGAATGTCCTGACAATAGAAAGAAAGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGAGAGCACAGTCTGGGAATGTCCTGACAATAGAAAGAAAGAGTC  450

seq1  CCCTTCAAAGGAGCTGGATTGCTCTACCAGTTGACATCGAAAGCCTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAAGGAGCTGGATTGCTCTACCAGTTGACATCGAAAGCCTTAGC  500

seq1  TAGTGCTTGCTGTGTAAACCTAGGGCTTCCTAAGGATCAGTGGGACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTGCTGTGTAAACCTAGGGCTTCCTAAGGATCAGTGGGACCTTA  550

seq1  AAGTGGGATGTTTGTCCATCTATTCCTTTGGCAGCAGCTATTCCAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGATGTTTGTCCATCTATTCCTTTGGCAGCAGCTATTCCAAACTA  600

seq1  TGCATCTTTTATTTTCTTCCCCTATGCTGCAGATCTTCCTCTATCTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTTTATTTTCTTCCCCTATGCTGCAGATCTTCCTCTATCTGCTA  650

seq1  AGTGATTGCCTGGGCCTTCAGAGCCAGAGTGTTGGTTAGAGGCAAGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTGCCTGGGCCTTCAGAGCCAGAGTGTTGGTTAGAGGCAAGGTCA  700

seq1  GGCTCCCCTGTGTGGGGACTTGAACTTGTAGTGTTTGTCTGCAGGCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCTGTGTGGGGACTTGAACTTGTAGTGTTTGTCTGCAGGCTGTA  750

seq1  GCAGTATCAACTGGGACAGAGGAACAACCACAGTGCCATGGAAGGGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATCAACTGGGACAGAGGAACAACCACAGTGCCATGGAAGGGCAGA  800

seq1  GGGCAGGTATTAGGGTAGTGAATGCCCATTAGATCAGTGAAAGAGAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTATTAGGGTAGTGAATGCCCATTAGATCAGTGAAAGAGAACAG  850

seq1  CACTGTCCAGGAGAGAGCCACCCCTTGGTTGCTAGAAAATGAGTATGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCAGGAGAGAGCCACCCCTTGGTTGCTAGAAAATGAGTATGACA  900

seq1  GATGTCATTATCTACGTTTATCCTAAGGAAAAAGCCAATTGATACTATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATTATCTACGTTTATCCTAAGGAAAAAGCCAATTGATACTATAA  950

seq1  AGTTGTCTCCAACAAAGGGGATCATCTGAGGAATCCCTGGTTTTTCTCTG  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTTGTCTCCAACAAA-GGGATCATCTGAGGAATCCCTGGTTTTTCTCTG  999

seq1  CTGTCTACCCCATGGGAAATATGAAGCCCTTTTCCGCCAAC-TCCCGAGG  1049
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGTCTACCCCATGGGAAATATGAAGCCCTTTTCCGCCAACTTCCCGAGG  1049

seq1  CT-CCCCTTGGAG-ACACC--TTGGCAGATTC-TGTCTGTA-CTCGCGGT  1093
      || |||||||||| |||||  | ||||||||| |||||||| ||||||||
seq2  CTCCCCCTTGGAGAACACCCTTGGGCAGATTCTTGTCTGTACCTCGCGGT  1099

seq1  CTTCAGCCTTGACCCTTACAG-TCCAGCAAGGAGTCAAGGCAG-CACATT  1141
      |||||||| ||| |||||||| |||||||| ||||||  |||| | ||||
seq2  CTTCAGCC-TGA-CCTTACAGTTCCAGCAA-GAGTCA--GCAGCCCCATT  1144

seq1  GCAC  1145
      ||||
seq2  GCAC  1148

seq1: chr8_113345950_113346968
seq2: B6Ng01-321B23.g_67_1081 (reverse)

seq1  CAAACAATTAAAGGCTGGGATGTACTGACTATGGTACCTCTAAGCCTCAT  50
      |||||||||||||||||| ||||||||||||| |||||| |||| |||| 
seq2  CAAACAATTAAAGGCTGGAATGTACTGACTAT-GTACCTTTAAG-CTCA-  47

seq1  TTTCCCTAAAGGAACACGGTTCCAAGGGATGACTGATTCAAGGCTGAAGC  100
      ||||||| ||||||||||| ||||| |||||||| |||||||||||||||
seq2  TTTCCCT-AAGGAACACGG-TCCAA-GGATGACTAATTCAAGGCTGAAGC  94

seq1  AAGAACATTCCCAATGCAACAGTTACCTAATTGTGCAAGAAGGCAGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATTCCCAATGCAACAGTTACCTAATTGTGCAAGAAGGCAGGCAA  144

seq1  GATAGCTGGGTC-AAATAAACAAACGAATTTCAAGGGAAACCACAATCAA  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATAGCTGGGTCAAAATAAACAAACGAATTTCAAGGGAAACCACAATCAA  194

seq1  AAATGAAGCAAAC-AAAAATCTAAGAGATGACAGTAATTTGAAGAAGAAA  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGCAAACAAAAAATCTAAGAGATGACAGTAATTTGAAGAAGAAA  244

seq1  ATACCCACAAATTTATATAGTTAAAAAATAAAAATCTACCTCCAACCAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACAAATTTATATAGTTAAAAAATAAAAATCTACCTCCAACCAAC  294

seq1  AAAATCCCTACTTCATCAGACTCAACTAGAATGACTGCTGTAATCCTAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCCTACTTCATCAGACTCAACTAGAATGACTGCTGTAATCCTAAC  344

seq1  TCCTACTGTAAAATTAGTGACTGAAGAAGGGGTTGGGAGAGAGCCATTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGTAAAATTAGTGACTGAAGAAGGGGTTGGGAGAGAGCCATTAT  394

seq1  CCTTTTCCTGTATAAAGTATGTTTAGAGCAAAGGAATAAACCTCAATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTGTATAAAGTATGTTTAGAGCAAAGGAATAAACCTCAATTTA  444

seq1  CAGACTTGATTACAAACATTTCAACATCACGCACCTCCAGTGGGATGCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGATTACAAACATTTCAACATCACGCACCTCCAGTGGGATGCAA  494

seq1  CAGAGTAGGGCCACTTCCACTACAACAGTTACGAGTGAGTAACTGCCGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAGGGCCACTTCCACTACAACAGTTACGAGTGAGTAACTGCCGTC  544

seq1  AACGTCTATAGTCTGCACTAACTGTGATTTTTCACGAGGAAATTAAAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTATAGTCTGCACTAACTGTGATTTTTCACGAGGAAATTAAAACA  594

seq1  TGCAAAGTATCAGATATTCAGAAAGTGTTACTAATCTTGGTGGGTATGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTATCAGATATTCAGAAAGTGTTACTAATCTTGGTGGGTATGAC  644

seq1  ATTACTAGTTTCTTAAAGCAAAACACTATAGAGATAACATTACTAAGTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAGTTTCTTAAAGCAAAACACTATAGAGATAACATTACTAAGTAT  694

seq1  AGGAGGGAAGAGGTACTGCCCTAGATTTGCTGTAAAATACTCCTTTAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAAGAGGTACTGCCCTAGATTTGCTGTAAAATACTCCTTTAAAT  744

seq1  GGGAAAATGAAGACTCATTTGTGTGTCTCATGCTCAAGCATTTTAAAGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATGAAGACTCATTTGTGTGTCTCATGCTCAAGCATTTTAAAGTA  794

seq1  TGAAACTAAAACTGAAAAAGCACAAGTCTGCCATCTAACTTAAGTCTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAAAACTGAAAAAGCACAAGTCTGCCATCTAACTTAAGTCTTTG  844

seq1  CAGGTCCTGATTCAGGAAGTAAGGCACATAGCACCGTGAGAGCACCGATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTGATTCAGGAAGTAAGGCACATAGCACCGTGAGAGCACCGATG  894

seq1  CTAGTTTACACTAGATTCCTGCTTTTTGTACCATGATAAAACTCATCTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTACACTAGATTCCTGCTTTTTGTACCATGATAAAACTCATCTCC  944

seq1  TTTGGCTACAAAAACACCCAGGCTTCTACACACTAGAGCTAACATGGTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTACAAAAACACCCAGGCTTCTACACACTAGAGCTAACATGGTCA  994

seq1  ATTATGAACTGGGAGGAATTC  1019
      |||||||||||||||||||||
seq2  ATTATGAACTGGGAGGAATTC  1015