BAC Information

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BAC

Clone NameB6Ng01-321E16
Chromosome8 (Build37)
Map Location 54,598,679 - 54,742,137
singlet/doubletdoublet
Overlap geneAga, Neil3
Upstream geneLOC676688
Downstream geneLOC100040107, Vegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321E16.bB6Ng01-321E16.g
ACCGA110440GA110441
length1,1111,190
definitionB6Ng01-321E16.b B6Ng01-321E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,598,679 - 54,599,786)(54,740,936 - 54,742,137)
sequence
gaattctttatagtaaggagtcatatactttggtctgtatcattctaatt
tccctgttgtaatgttcccatttggtaaaatgacttgttaaaatttcagc
ttaacagtataaatgttaagaaaaaaaaaacttagacatctcaaactgtt
cttggcttgttgcatttcacattgaaaatatatatgactatacataagct
ctgttggaatttaacagcgtggtggacattgctatctggaggttctgccc
tggatgcagtggagaacggctgtgctgtgtgtgagaaggagcagtgtgat
gggactgtaggctttggaggaagtcctgatgaaggtggcgaaaccaccct
ggatgccatgataatggatgggtaaggatgcttttcaggacttgtctgtg
cgctctcctgtcaggtgggctcatattcagagcaggctggaaggatgcat
gaatgtgagcatcagccagaagtcccggcttatggggcttctcccttcca
acacaaagagtgaacagaaaaaagaaaagaaaagccgaaaggtcacccgg
atactcaggatcacagaaaagtaggtggttaagtagctttggctgaggag
aaccctgagatgcagagctgtacctgtgccacagttatttgctaccatct
gcaaatgctgtggtctcagtgacctcacccagaggcctctgtaaaagcca
tgtttaaaataatgtgttgggatatatactaaatcgactgttcgttcttg
aattttgtctgcgggaatccatgaactttacgggcggttttcccttctgt
gttgagatgcagtttagccttccacgtattgctgctccgagaaatgcgat
tttttatgttcaaataccaacagaaatgccttcgtaaatcttccacgtcc
ttgccttccagcactgccatggatgtgggagcagtgggaggccttagaag
aatttaaaacgcgattggcgtggcgcggagagtcctggagcataccacac
acacgctttagtgggggactcaagtatatgtaaacataccgaaattttgt
tccagtctttttgtcttattgtcactggagaaagaagagagggagagaag
gtaaggaaggg
gaattcattgcacagggatctggaggctgaaaatggaaggttcaggatca
atcagacattatatttcctaagagttggtttttcagagatgaaatctcct
gtgtggtcctcttacagcagaggaagcaagctctttggaatcttatttat
aggcataatagtcccagccaggccacaatcacttccaaaggtttcgtctg
ttaaaaacaacatatagatcatgatgcactggcaacgaagtttctgcatg
tgactttgtaggaggagatattccaactagcaaacacaaggactacatgg
tatgattgcagggaaggggcacaggagtttttcctgacttcatgtcctgg
actgtactctctacaagtggttgttagcatttcttctaggccccacccaa
cagttacttagcaacagccaggtattagcctggcttgctataaaaggatc
tctgtctgtctgtctgtctgtctgtctgtctgtctgtctctgtctctgtc
tccctctctctctctctccctcttcctccctccgcccttcttctctctca
cctctttctcaccttggcctctttccttctttctctctcctctttctttc
tgtccccttcctttcccacactgctgttcttatgcctgaaatatacttca
ttttatatcagacccttcatacggctgggacctcggcaggagtggaggtg
tctccgcataggcccacgaaggcaccctctcctggtgcatcatgcctcca
cattgcataacatatcaatggtatttttattaaaaaaaaaacctaatcgc
tatttttgtttaagccactccccgtggctgggacataaacatgattccgt
atacctagagaaaatgctatcggtatgatgtttaagtcgaaaaaccaaga
gacttgaaaacgagattggacagacaggcacagagttgtcgtttttactt
tgtcaaaattcaggagaaggagactgtccacgaaaaaacagacgggagaa
tgtctgagacttcaaaaacacatcttaattattaaaccttcaacccaatc
tcctactgctatacaaccataacagaatgggcttgcaaatgatgtttctt
catttgtttgttcaatttccttgcttgaaaacaatgtctgtgtttagttc
aggctagctggactgatatgcagccaggtcacctcatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54598679_54599786
seq2: B6Ng01-321E16.b_45_1155

seq1  GAATTCTTTATAGTAAGGAGTCATATACTTTGGTCTGTATCATTCTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAGTAAGGAGTCATATACTTTGGTCTGTATCATTCTAATT  50

seq1  TCCCTGTTGTAATGTTCCCATTTGGTAAAATGACTTGTTAAAATTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTGTAATGTTCCCATTTGGTAAAATGACTTGTTAAAATTTCAGC  100

seq1  TTAACAGTATAAATGTTAAGAAAAAAAAAACTTAGACATCTCAAACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTATAAATGTTAAGAAAAAAAAAACTTAGACATCTCAAACTGTT  150

seq1  CTTGGCTTGTTGCATTTCACATTGAAAATATATATGACTATACATAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTGTTGCATTTCACATTGAAAATATATATGACTATACATAAGCT  200

seq1  CTGTTGGAATTTAACAGCGTGGTGGACATTGCTATCTGGAGGTTCTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGAATTTAACAGCGTGGTGGACATTGCTATCTGGAGGTTCTGCCC  250

seq1  TGGATGCAGTGGAGAACGGCTGTGCTGTGTGTGAGAAGGAGCAGTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCAGTGGAGAACGGCTGTGCTGTGTGTGAGAAGGAGCAGTGTGAT  300

seq1  GGGACTGTAGGCTTTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTAGGCTTTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCT  350

seq1  GGATGCCATGATAATGGATGGGTAAGGATGCTTTTCAGGACTTGTCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCATGATAATGGATGGGTAAGGATGCTTTTCAGGACTTGTCTGTG  400

seq1  CGCTCTCCTGTCAGGTGGGCTCATATTCAGAGCAGGCTGGAAGGATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTCCTGTCAGGTGGGCTCATATTCAGAGCAGGCTGGAAGGATGCAT  450

seq1  GAATGTGAGCATCAGCCAGAAGTCCCGGCTTATGGGGCTTCTCCCTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAGCATCAGCCAGAAGTCCCGGCTTATGGGGCTTCTCCCTTCCA  500

seq1  ACACAAAGAGTGAACAGAAAAAAGAAAAGAAAAGCCGAAAGGTCACCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGAGTGAACAGAAAAAAGAAAAGAAAAGCCGAAAGGTCACCCGG  550

seq1  ATACTCAGGATCACAGAAAAGTAGGTGGTTAAGTAGCTTTGGCTGAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAGGATCACAGAAAAGTAGGTGGTTAAGTAGCTTTGGCTGAGGAG  600

seq1  AACCCTGAGATGCAGAGCTGTACCTGTGCCACAGTTATTTGCTACCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAGATGCAGAGCTGTACCTGTGCCACAGTTATTTGCTACCATCT  650

seq1  GCAAATGCTGTGGTCTCAGTGACCTCACCCAGAGGCCTCTGTAAAAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCTGTGGTCTCAGTGACCTCACCCAGAGGCCTCTGTAAAAGCCA  700

seq1  TGTTTAAAATAATGTGTTGGGATATATACTAAATCGACTGTTCGTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAATAATGTGTTGGGATATATACTAAATCGACTGTTCGTTCTTG  750

seq1  AATTTTGTCTGCGGGAATCCATGAACTTTACGGGCGGTTTTCCCTTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCTGCGGGAATCCATGAACTTTACGGGCGGTTTTCCCTTCTGT  800

seq1  GTTGAGATGCAGTTTAGCCTTCCACGTATTGCTGCTCCGAGAAATGCGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGATGCAGTTTAGCCTTCCACGTATTGCTGCTCCGAGAAATGCGAT  850

seq1  TTTTTATGTTCAAATACCAACAGAAAATGCCTTCGTAAATCTTCCACGTC  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTTATGTTCAAATACCAACAG-AAATGCCTTCGTAAATCTTCCACGTC  899

seq1  CTTGCCTTCCAGCACTGCCATGGATGTGGGAGCAGTGGGAGGCCTTAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCCAGCACTGCCATGGATGTGGGAGCAGTGGGAGGCCTTAGAA  949

seq1  GAATTAAAAACGCGATTGGCGTGGCGCGGAGAGTCCTGGAGCATACCACA  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAAACGCGATTGGCGTGGCGCGGAGAGTCCTGGAGCATACCACA  999

seq1  CACACGCTTTTAGTGGGGGACTCAGGTATATGTAAAACCATACCGAAATT  1050
      ||||||| |||||||||||||||| |||||||||||  ||||||||||||
seq2  CACACGC-TTTAGTGGGGGACTCAAGTATATGTAAA--CATACCGAAATT  1046

seq1  TTGTTCCAGTCTTTTTGTC-TATTGTCACT-GAGAAAG-AGAGAGGGAGA  1097
      ||||||||||||||||||| |||||||||| ||||||| |||||||||||
seq2  TTGTTCCAGTCTTTTTGTCTTATTGTCACTGGAGAAAGAAGAGAGGGAGA  1096

seq1  G--GG--AGGAAGGG  1108
      |  ||  ||||||||
seq2  GAAGGTAAGGAAGGG  1111

seq1: chr8_54740936_54742137
seq2: B6Ng01-321E16.g_69_1258 (reverse)

seq1  GGTATGAGGTGACCCTGGGCTGCATAATCAGTTTCAGGCTAGCTTGGGAC  50
      ||||||||||||||   |||||||| |||||  ||  |||||| | | ||
seq2  GGTATGAGGTGACC--TGGCTGCAT-ATCAG--TCCAGCTAGCCT-GAAC  44

seq1  TAACAAACCAGACATTGTTCTC-AGCCAGAGAAATGAACAAACAAATGAA  99
      ||  ||  ||||||||||| || ||| ||  || ||||||||||||||||
seq2  TA--AACACAGACATTGTTTTCAAGCAAGGAAATTGAACAAACAAATGAA  92

seq1  GAAACATACATTTGCAAGCCCA-TCTG-TATGGTTGTATAGCAGTAGGAG  147
      ||||||| |||||||||||||| |||| ||||||||||||||||||||| 
seq2  GAAACAT-CATTTGCAAGCCCATTCTGTTATGGTTGTATAGCAGTAGGA-  140

seq1  GATTTGGGGTTGAAGGTTTAATAATTAAAGATGTGTTTTTGAAGTTCTCA  197
      ||||  |||||||||||||||||||| ||||||||||||||||| |||||
seq2  GATT--GGGTTGAAGGTTTAATAATT-AAGATGTGTTTTTGAAG-TCTCA  186

seq1  GACATCTCCCCGTCTGTTTTTTCGTGGACAGTCTCCTTCTCCCTGAATTT  247
      |||||   |||||||||||||||||||||||||||||||| |||||||||
seq2  GACATTCTCCCGTCTGTTTTTTCGTGGACAGTCTCCTTCT-CCTGAATTT  235

seq1  TGACAAAGTAAAAACGACAACTCTGTGCCTGTCTGTCCAATCTCGTTTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGTAAAAACGACAACTCTGTGCCTGTCTGTCCAATCTCGTTTTC  285

seq1  AAGTCTCTTGGTTTTTCGACTTAAACATCATACCGATAGCATTTTCTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTTGGTTTTTCGACTTAAACATCATACCGATAGCATTTTCTCTA  335

seq1  GGTATACGGAATCATGTTTATGTCCCAGCCACGGGGAGTGGCTTAAACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACGGAATCATGTTTATGTCCCAGCCACGGGGAGTGGCTTAAACAA  385

seq1  AAATAGCGATTAGGTTTTTTTTTTAATAAAAATACCATTGATATGTTATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCGATTAGGTTTTTTTTTTAATAAAAATACCATTGATATGTTATG  435

seq1  CAATGTGGAGGCATGATGCACCAGGAGAGGGTGCCTTCGTGGGCCTATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGAGGCATGATGCACCAGGAGAGGGTGCCTTCGTGGGCCTATGC  485

seq1  GGAGACACCTCCACTCCTGCCGAGGTCCCAGCCGTATGAAGGGTCTGATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACCTCCACTCCTGCCGAGGTCCCAGCCGTATGAAGGGTCTGATA  535

seq1  TAAAATGAAGTATATTTCAGGCATAAGAACAGCAGTGTGGGAAAGGAAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAAGTATATTTCAGGCATAAGAACAGCAGTGTGGGAAAGGAAGG  585

seq1  GGACAGAAAGAAAGAGGAGAGAGAAAGAAGGAAAGAGGCCAAGGTGAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAAGAAAGAGGAGAGAGAAAGAAGGAAAGAGGCCAAGGTGAGAA  635

seq1  AGAGGTGAGAGAGAAGAAGGGCGGAGGGAGGAAGAGGGAGAGAGAGAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGAGAGAAGAAGGGCGGAGGGAGGAAGAGGGAGAGAGAGAGAG  685

seq1  AGGGAGACAGAGACAGAGACAGACAGACAGACAGACAGACAGACAGACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACAGAGACAGAGACAGACAGACAGACAGACAGACAGACAGACAG  735

seq1  ACAGAGATCCTTTTATAGCAAGCCAGGCTAATACCTGGCTGTTGCTAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCCTTTTATAGCAAGCCAGGCTAATACCTGGCTGTTGCTAAGT  785

seq1  AACTGTTGGGTGGGGCCTAGAAGAAATGCTAACAACCACTTGTAGAGAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGGGTGGGGCCTAGAAGAAATGCTAACAACCACTTGTAGAGAGT  835

seq1  ACAGTCCAGGACATGAAGTCAGGAAAAACTCCTGTGCCCCTTCCCTGCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCAGGACATGAAGTCAGGAAAAACTCCTGTGCCCCTTCCCTGCAA  885

seq1  TCATACCATGTAGTCCTTGTGTTTGCTAGTTGGAATATCTCCTCCTACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCATGTAGTCCTTGTGTTTGCTAGTTGGAATATCTCCTCCTACAA  935

seq1  AGTCACATGCAGAAACTTCGTTGCCAGTGCATCATGATCTATATGTTGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATGCAGAAACTTCGTTGCCAGTGCATCATGATCTATATGTTGTT  985

seq1  TTTAACAGACGAAACCTTTGGAAGTGATTGTGGCCTGGCTGGGACTATTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGACGAAACCTTTGGAAGTGATTGTGGCCTGGCTGGGACTATTA  1035

seq1  TGCCTATAAATAAGATTCCAAAGAGCTTGCTTCCTCTGCTGTAAGAGGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATAAATAAGATTCCAAAGAGCTTGCTTCCTCTGCTGTAAGAGGAC  1085

seq1  CACACAGGAGATTTCATCTCTGAAAAACCAACTCTTAGGAAATATAATGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGAGATTTCATCTCTGAAAAACCAACTCTTAGGAAATATAATGT  1135

seq1  CTGATTGATCCTGAACCTTCCATTTTCAGCCTCCAGATCCCTGTGCAATG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGATCCTGAACCTTCCATTTTCAGCCTCCAGATCCCTGTGCAATG  1185

seq1  AATTC  1202
      |||||
seq2  AATTC  1190