BAC Information

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BAC

Clone NameB6Ng01-321G01
Chromosome8 (Build37)
Map Location 30,052,636 - 30,140,311
singlet/doubletdoublet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321G01.bB6Ng01-321G01.g
ACCGA110502GA110503
length8431,014
definitionB6Ng01-321G01.b B6Ng01-321G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,052,636 - 30,053,482)(30,139,314 - 30,140,311)
sequence
gaattctcaacaaaaccatttcgaaccagatgcacattaaaaatattatt
cattttgatcaagtcgacttttcccagagatgcagagatggttcagcata
cataaatcaatacagtataataagttcataataactgtcctagagaaaat
gggaatggagggaacataagtcaatataatatgtaaaataaataatttat
tggaaaaaaatgttaatctaatctctcagtcaaaatcagccaaagtggtt
cctactctccgaaaaaacactcattgcatgcagtaaatgaggttaatttt
gcttctacccatgttgaagttatgggggaccttacaggcctgtaggtgct
gaggtcagacactgcttaccccatgactatctagtatggttgcatattca
gcacctgctgcttaccacaaattagtatgaagaacaaattttctgctagt
aaggagttcaatatctctggagttttatatgtatatcttttattagtaaa
taaaccaatcatttctttggctagggccataattcagttgtaaagaaatc
aaatcacatatacaaggacctacagcaacacacacaaaaattataatgaa
aaaaaattagggaataaattcctttcttgaaagtcagtctagggcattta
ctgctaatatttagtatttctatgaaatactcattcataagtacacctgt
ctttgaaaggatctggttacctgtcttaagcaaatgaatggagggcataa
attagtaactgttccctggagagacccacagaacagtgctagaatagaat
agacaggacagctctgtgtgtgagtgcacacagggggagggga

gaattctctaggttgggtttttagctccaaaataaaagatacatcaaaat
gccattccagtatttgggaaacttggataagaggattgtatatcagaggc
cagcctgggctagatagcccataccaataaagtatagaatatgcagctag
actgtctaaagaaactatattaattgtctgggtgagattccagattatat
acagaaataaaaaacagtaagagttagaaattaattgggaagactatcca
ggaaagcctcaatgccttgcccaccatgaatcagcaggagtggcatgtga
cacctaacactaacaaggtaagggtttattctctcccaagcactggcaca
cctcactcttcacattgtttctatggtatataatctatgatttagtggaa
atcccctaacctttattgagtcaattaagtacattagtgtggaacaatgc
agtggcagacaagagaattattgtttggatgtttggttatggagaaagtt
agctagagagtgtatgggatcgtcagtcccttctgcaaggtatggagact
ctgaaaatctcaagcaaaagcagaaatcctcatgctaccactgaatagat
ggatttctcagctctatagagttttcaaagcacagccccaagtatcacaa
taaatcagctcattagcatctccctttaaaccgctggtgctttcctaagt
ggcctggccatgtagcagcaagcatggcacagagcctatgtgggattctc
cctgagcccaaaggctatggaatcacaggtgatgccaattaagctcaccg
actggacttcccagggaggaggcatctttcatgtctttgcagcctaatga
agaagaatcatttgagtaacttttctccccccttttcttcttcgtcgttc
ttttttttttttttaccaagacgatattgaaattaaagggagccttcctc
gaggaagctgtagaactttttaatgaatatgtacattaatctgtacactc
cacagaccttcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_30052636_30053482
seq2: B6Ng01-321G01.b_48_890

seq1  GAATTCTCAACAAAACCATTTCGAACCAGATGCACATTAAAAATATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACAAAACCATTTCGAACCAGATGCACATTAAAAATATTATT  50

seq1  CATTTTGATCAAGTCGACTTTTCCCAGAGATGCAGAGATGGTTCAGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGATCAAGTCGACTTTTCCCAGAGATGCAGAGATGGTTCAGCATA  100

seq1  CATAAATCAATACAGTATAATAAGTTCATAATAACTGTCCTAGAGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCAATACAGTATAATAAGTTCATAATAACTGTCCTAGAGAAAAT  150

seq1  GGGAATGGAGGGAACATAAGTCAATATAATATGTAAAATAAATAATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGAGGGAACATAAGTCAATATAATATGTAAAATAAATAATTTAT  200

seq1  TGGAAAAAAATGTTAATCTAATCTCTCAGTCAAAATCAGCCAAAGTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAATGTTAATCTAATCTCTCAGTCAAAATCAGCCAAAGTGGTT  250

seq1  CCTACTCTCCGAAAAAACACTCATTGCATGCAGTAAATGAGGTTAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCTCCGAAAAAACACTCATTGCATGCAGTAAATGAGGTTAATTTT  300

seq1  GCTTCTACCCATGTTGAAGTTATGGGGGACCTTACAGGCCTGTAGGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACCCATGTTGAAGTTATGGGGGACCTTACAGGCCTGTAGGTGCT  350

seq1  GAGGTCAGACACTGCTTACCCCATGACTATCTAGTATGGTTGCATATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGACACTGCTTACCCCATGACTATCTAGTATGGTTGCATATTCA  400

seq1  GCACCTGCTGCTTACCACAAATTAGTATGAAGAACAAATTTTCTGCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGCTGCTTACCACAAATTAGTATGAAGAACAAATTTTCTGCTAGT  450

seq1  AAGGAGTTCAATATCTCTGGAGTTTTATATGTATATCTTTTATTAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTCAATATCTCTGGAGTTTTATATGTATATCTTTTATTAGTAAA  500

seq1  TAAACCAATCATTTCTTTGGCTAGGGCCATAATTCAGTTGTAAAGAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAATCATTTCTTTGGCTAGGGCCATAATTCAGTTGTAAAGAAATC  550

seq1  AAATCACATATACAAGGACCTACAGCAACACACACAAAAATTATAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATATACAAGGACCTACAGCAACACACACAAAAATTATAATGAA  600

seq1  AAAAAATTAGGGAATAAATTCCTTTCTTGAAAGTCAGTCTAGGGCATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAGGGAATAAATTCCTTTCTTGAAAGTCAGTCTAGGGCATTTA  650

seq1  CTGCTAATATTTAGTATTTCTATGAAATACTCATTCATAAGTACACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATATTTAGTATTTCTATGAAATACTCATTCATAAGTACACCTGT  700

seq1  CTTTGAAAGGATCTGGTTACCTGTCTTAAGCAAATGAATGGAGGGCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGGATCTGGTTACCTGTCTTAAGCAAATGAATGGAGGGCATAA  750

seq1  ATTAGTAACTGTTCCCTGGAGAGACCCACAGAACAGTGCTAGAATAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAACTGTTCCCTGGAGAGACCCACAGAACAGTGCTAGAATAGAAT  800

seq1  AGACAGGACAGCTCTGTGTGTGAGTGCACACAGGGGAGGGGAGGGGA  847
      |||||||||||||||||||||||||||||||||    ||||||||||
seq2  AGACAGGACAGCTCTGTGTGTGAGTGCACACAG----GGGGAGGGGA  843


seq1: chr8_30139314_30140311
seq2: B6Ng01-321G01.g_68_1081 (reverse)

seq1  TATG-AGGTCTGT-GAGTGTACAGAATTATGTACATA-TCATTAAAAAG-  46
      |||| |||||||| ||||||||||| | ||||||||| ||||||||||| 
seq2  TATGAAGGTCTGTGGAGTGTACAGATTAATGTACATATTCATTAAAAAGT  50

seq1  TCTACAGC-TCCTCGAGG-AGGCT-CCTTTAATTTC-ATATCCTCTT-GT  91
      |||||||| ||||||||| ||||| ||||||||||| ||||| |||| ||
seq2  TCTACAGCTTCCTCGAGGAAGGCTCCCTTTAATTTCAATATCGTCTTGGT  100

seq1  TAAAAAAAAAAAAAGAA-GAAGAAGAAGAAAAGGGGGGAG-AAAGTTACT  139
       |||||||||||||||| || ||||||||||||||||||| |||||||||
seq2  AAAAAAAAAAAAAAGAACGACGAAGAAGAAAAGGGGGGAGAAAAGTTACT  150

seq1  CAAATGATTCTTCTTCATTAGGCTGCAAAGACATGAAAGATGCCTCCT-C  188
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAATGATTCTTCTTCATTAGGCTGCAAAGACATGAAAGATGCCTCCTCC  200

seq1  CTGGGAAGTCCAGTCGGTG-GCTTAATTGGCATCACCTGTGATTCCATAG  237
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGGGAAGTCCAGTCGGTGAGCTTAATTGGCATCACCTGTGATTCCATAG  250

seq1  CCTTTGGGCTCA-GGAGAATCCCACATAGGCTCTGTGCCATGCTTGCTGC  286
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGCTCAGGGAGAATCCCACATAGGCTCTGTGCCATGCTTGCTGC  300

seq1  TACATGGCCAGGCCACTTAGG-AAGCACCAGCGGTTTAAAGGGAGATGCT  335
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACATGGCCAGGCCACTTAGGAAAGCACCAGCGGTTTAAAGGGAGATGCT  350

seq1  AATGAGCTGATTTATTGTGATACTTGGGGCTGTGCTTTGAAAACTCTATA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTGATTTATTGTGATACTTGGGGCTGTGCTTTGAAAACTCTATA  400

seq1  GAGCTGAG-AATCCATCTATTCAGTGGTAGCATGAGGATTTCTGCTTTTG  434
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGAAATCCATCTATTCAGTGGTAGCATGAGGATTTCTGCTTTTG  450

seq1  CTTGAGATTTTCAGAGTCTCCATACCTTGCAGAAGGGACTGACGATCCCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATTTTCAGAGTCTCCATACCTTGCAGAAGGGACTGACGATCCCA  500

seq1  TACACTCTCTAGCTAACTTTCTCCATAACCAAACATCCAAACAATAATTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCTCTAGCTAACTTTCTCCATAACCAAACATCCAAACAATAATTC  550

seq1  TCTTGTCTGCCACTGCATTGTTCCACACTAATGTACTTAATTGACTCAAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTGCCACTGCATTGTTCCACACTAATGTACTTAATTGACTCAAT  600

seq1  AAAGGTTAGGGGATTTCCACTAAATCATAGATTATATACCATAGAAACAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTAGGGGATTTCCACTAAATCATAGATTATATACCATAGAAACAA  650

seq1  TGTGAAGAGTGAGGTGTGCCAGTGCTTGGGAGAGAATAAACCCTTACCTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGAGTGAGGTGTGCCAGTGCTTGGGAGAGAATAAACCCTTACCTT  700

seq1  GTTAGTGTTAGGTGTCACATGCCACTCCTGCTGATTCATGGTGGGCAAGG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGTTAGGTGTCACATGCCACTCCTGCTGATTCATGGTGGGCAAGG  750

seq1  CATTGAGGCTTTCCTGGATAGTCTTCCCAATTAATTTCTAACTCTTACTG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGGCTTTCCTGGATAGTCTTCCCAATTAATTTCTAACTCTTACTG  800

seq1  TTTTTTATTTCTGTATATAATCTGGAATCTCACCCAGACAATTAATATAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTCTGTATATAATCTGGAATCTCACCCAGACAATTAATATAG  850

seq1  TTTCTTTAGACAGTCTAGCTGCATATTCTATACTTTATTGGTATGGGCTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGACAGTCTAGCTGCATATTCTATACTTTATTGGTATGGGCTA  900

seq1  TCTAGCCCAGGCTGGCCTCTGATATACAATCCTCTTATCCAAGTTTCCCA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCCAGGCTGGCCTCTGATATACAATCCTCTTATCCAAGTTTCCCA  950

seq1  AATACTGGAATGGCATTTTGATGTATCTTTTATTTTGGAGCTAAAAACCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGAATGGCATTTTGATGTATCTTTTATTTTGGAGCTAAAAACCC  1000

seq1  AACCTAGAGAATTC  998
      ||||||||||||||
seq2  AACCTAGAGAATTC  1014


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