BAC Information

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BAC

Clone NameB6Ng01-321N19
Chromosome8 (Build37)
Map Location 108,317,752 - 108,468,068
singlet/doubletdoublet
Overlap geneRanbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4
Upstream gene4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Downstream geneDpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321N19.bB6Ng01-321N19.g
ACCGA110861GA110862
length1,2011,113
definitionB6Ng01-321N19.b B6Ng01-321N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,317,752 - 108,318,946)(108,466,970 - 108,468,068)
sequence
gaattcttctctgcagggttgtaacaagcaaggtaatatatgaaacacca
tgagaacagcctccttactacagaaaagacaagtggggcaatgccagaac
ctagctctgttgcacatggtccttctttagacacagcatgagtttccctg
gacacagaaacaaaatctacaccccccccccaatctctcaaagcacccaa
gcacccaaacactgaagaagcccaaacccccggtctccacccacaatcct
accttcttcatccagcttcctcaatcaaggaatcccttgattgccagacc
ctgctctttctccaaggcaacgggtgtggcagcagcaggcagctacactc
acctaccagtagatcatctagtcttgcctgtgagtcatttagcccagggt
tccaacattcttattttggagccacacctgctacttggtttcacacttaa
agaggccaaagaacaccttacaaaagataaacaaaacttctatctacatc
tttcaacagaaacttctgacagtgcaaactaagacactcccaaatgctct
caagaatctgagcagcacagcctcatgggagagatgtgcctgtcatcatc
tgcaccagtaagtacccacagtgccacccctctgccccaacagcctggaa
ggcaaaggagctccagtgagccaataacctataagaacacattagaagca
tcaacattctgaccacgtgctcagccaccttccagaagaatgccactcct
gctagcacagcctacattcaaattcagaaaacaggcactgtaggggaaag
gacagtctctgtctctctctgtgtctctgtctctctctgtgtctctgtct
gtctctctctctctctctgtatctctgtctctgtctgtctctctctctgt
ctctctgtgtctctccctctcccttctccctctctgtctctctctgagac
agggtcttcttttattatatagttcctgctatcctggacctcactgtgaa
gaacagggtagccttgggctcacagagatccacctgccttctgccttctg
agcgctgagattaaacatgttccccatccacacctagcctttaaatagtg
cagttcaataaaactaccttcaggtctatattgccagactcttccacaga
accttaattccggtcctccgatttccagtagaaaaaacacttttaccttt
t
gaattccttgaagtcctaaccgagggccttgaacgggtgttgttggtgcg
tggcggcggccgggaagtcatcaccatctattcctgagccccgatggagt
cttgtggcctggagttggggtgtctaggacaacagtgcccggccttgcac
ctacttgccagttctgctttgcccagccttgctttggaccagctctgcta
cgtctccagggaaaccaagcttgggccttgcagtggaaatggatccgagg
gcccaggggaccctggtggatttagggactgtcccctcccatactccaat
agaggcctatcctgactagagaagactggtgagggttgatacgggatttg
aattcccagatgggcccacaagtgctatttattgtatatttattgtttgg
atgtcatcatttcagaaaggggaagaggggcacagtaagagggggagctg
agctgggcctgcctgcaggaagacctggcccaggctgctgtgggcagagg
ccctcatcaagccaagtggaatggagccggccaagctgagcctgactttt
ttcaataaaacattgtgtacttctgggcctcctgctgctccggctctttt
ttccctggcgccaagggaagaaagacggaactgaaccccagtccagagcc
agatcccaaaggctatgccccttcctggccacccccattggccgtctgtc
cctcccactggccccgggggcccctcccacccccggtccagataaggcca
gccccaggactgcctcatctgtcagtaggcactgggctgtgatggggctg
cctggctccccatggcagcgggtgctgttgctgttggggctactgctcct
cctgccacccccttctggctcctcaatgtgctcttcccccccgcacacca
acgcccaaggcttgaactcagttaccacacaccggtcctgtcatcctcgg
taagcccctcactaggctcctgatacatcaagcgagacctccggggagcc
tgggtcctaagcccgacagcagcagatcttgtcaagttcttcttggccca
ctatgaagccctcacgaacctgaattgggatgggtgggaaggaaccaaaa
gctctcgttctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108317752_108318946
seq2: B6Ng01-321N19.b_47_1247

seq1  GAATTCTTCTCTGCAGGGTTGTAACAAGCAAGGTAATATATGAAACACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTGCAGGGTTGTAACAAGCAAGGTAATATATGAAACACCA  50

seq1  TGAGAACAGCCTCCTTACTACAGAAAAGACAAGTGGGGCAATGCCAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAGCCTCCTTACTACAGAAAAGACAAGTGGGGCAATGCCAGAAC  100

seq1  CTAGCTCTGTTGCACATGGTCCTTCTTTAGACACAGCATGAGTTTCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCTGTTGCACATGGTCCTTCTTTAGACACAGCATGAGTTTCCCTG  150

seq1  GACACAGAAACAAAATCTACACCCCCCCCCCAATCTCTCAAAGCACCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAAACAAAATCTACACCCCCCCCCCAATCTCTCAAAGCACCCAA  200

seq1  GCACCCAAACACTGAAGAAGCCCAAACCCCCGGTCTCCACCCACAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAAACACTGAAGAAGCCCAAACCCCCGGTCTCCACCCACAATCCT  250

seq1  ACCTTCTTCATCCAGCTTCCTCAATCAAGGAATCCCTTGATTGCCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTCATCCAGCTTCCTCAATCAAGGAATCCCTTGATTGCCAGACC  300

seq1  CTGCTCTTTCTCCAAGGCAACGGGTGTGGCAGCAGCAGGCAGCTACACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTCTCCAAGGCAACGGGTGTGGCAGCAGCAGGCAGCTACACTC  350

seq1  ACCTACCAGTAGATCATCTAGTCTTGCCTGTGAGTCATTTAGCCCAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCAGTAGATCATCTAGTCTTGCCTGTGAGTCATTTAGCCCAGGGT  400

seq1  TCCAACATTCTTATTTTGGAGCCACACCTGCTACTTGGTTTCACACTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATTCTTATTTTGGAGCCACACCTGCTACTTGGTTTCACACTTAA  450

seq1  AGAGGCCAAAGAACACCTTACAAAAGATAAACAAAACTTCTATCTACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAAAGAACACCTTACAAAAGATAAACAAAACTTCTATCTACATC  500

seq1  TTTCAACAGAAACTTCTGACAGTGCAAACTAAGACACTCCCAAATGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAGAAACTTCTGACAGTGCAAACTAAGACACTCCCAAATGCTCT  550

seq1  CAAGAATCTGAGCAGCACAGCCTCATGGGAGAGATGTGCCTGTCATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCTGAGCAGCACAGCCTCATGGGAGAGATGTGCCTGTCATCATC  600

seq1  TGCACCAGTAAGTACCCACAGTGCCACCCCTCTGCCCCAACAGCCTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAGTAAGTACCCACAGTGCCACCCCTCTGCCCCAACAGCCTGGAA  650

seq1  GGCAAAGGAGCTCCAGTGAGCCAATAACCTATAAGAACACATTAGAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGAGCTCCAGTGAGCCAATAACCTATAAGAACACATTAGAAGCA  700

seq1  TCAACATTCTGACCACGTGCTCAGCCACCTTCCAGAAGAATGCCACTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTCTGACCACGTGCTCAGCCACCTTCCAGAAGAATGCCACTCCT  750

seq1  GCTAGCACAGCCTACATTCAAATTCAGAAAACAGGCACTGTAGGGGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCACAGCCTACATTCAAATTCAGAAAACAGGCACTGTAGGGGAAAG  800

seq1  GACAGTCTCTGTCTCTCTCTGTGTCTCTGTCTCTCTCTGTGTCTCTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTCTGTCTCTCTCTGTGTCTCTGTCTCTCTCTGTGTCTCTGTCT  850

seq1  GTCTCTCTCTCTCTCTCTGTATCTCTGTCTCTGTCTGTCTCTCTCTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCTCTCTCTCTGTATCTCTGTCTCTGTCTGTCTCTCTCTCTGT  900

seq1  CTCTCTGTGTCTCTCCCTCTCCC-TCTCCCTCTCTGTCTCTCTCTGAGAC  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCTCTGTGTCTCTCCCTCTCCCTTCTCCCTCTCTGTCTCTCTCTGAGAC  950

seq1  AGGGTCT--CTTTATTATATAGTTCCTGCTATCCTGGACCTCACTGTGAA  997
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTCTTTTATTATATAGTTCCTGCTATCCTGGACCTCACTGTGAA  1000

seq1  GAACAGGGTAGCCTTGGGCTCACAGAGATCCACCTGCC-TCTGCCTTCTG  1046
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAACAGGGTAGCCTTGGGCTCACAGAGATCCACCTGCCTTCTGCCTTCTG  1050

seq1  AGCGCTGAGATTAAACATGTCCCCCAT-CACACCCAGCC-TTAAATAGTG  1094
      |||||||||||||||||||| |||||| |||||| |||| ||||||||||
seq2  AGCGCTGAGATTAAACATGTTCCCCATCCACACCTAGCCTTTAAATAGTG  1100

seq1  CAGTTTCAATAAAAACTACCTCCA-GTCTATAT--GCAGACTCT--CACA  1139
      ||| |||||| |||||||||| || ||||||||   ||||||||  ||||
seq2  CAG-TTCAAT-AAAACTACCTTCAGGTCTATATTGCCAGACTCTTCCACA  1148

seq1  GAACTATAAGTGCACAGGTCCTCCCATTTTCAGGTAGAAAAAA-ACATTT  1188
      ||||  ||| |   | |||||||| |||| || |||||||||| || |||
seq2  GAACCTTAATT---CCGGTCCTCCGATTTCCA-GTAGAAAAAACACTTTT  1194

seq1  ACCTTTT  1195
      |||||||
seq2  ACCTTTT  1201

seq1: chr8_108466970_108468068
seq2: B6Ng01-321N19.g_66_1178 (reverse)

seq1  GGAGAAC--GAGCCTTTGG-TCCTTC---CCCACACCAATTCAGGCTCGT  44
      |||||||  |||| ||||| ||||||   ||||  |||||||||| ||||
seq2  GGAGAACGAGAGCTTTTGGTTCCTTCCCACCCATCCCAATTCAGGTTCGT  50

seq1  GAGGGC-TCATGGTGGGCCAAGAGAACCTTGACAGAATCTGCTGCTGTCG  93
      |||||| |||| |||||||||||  | |||||||  ||||||||||||||
seq2  GAGGGCTTCATAGTGGGCCAAGAAGAACTTGACAAGATCTGCTGCTGTCG  100

seq1  GGCTTAGGACCCAGGCTCCCCGG-GGTCTCGCTTGATGTATCAGGGGCCT  142
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  GGCTTAGGACCCAGGCTCCCCGGAGGTCTCGCTTGATGTATCAGGAGCCT  150

seq1  AGTG-GGGGCTTACCGAGGATGACAGG--CCGTGTGTGGTTACTGAGTTC  189
      |||| ||||||||||||||||||||||  | ||||||||| |||||||||
seq2  AGTGAGGGGCTTACCGAGGATGACAGGACCGGTGTGTGGTAACTGAGTTC  200

seq1  -AGCCTTGGGCG-TGGTGTGC-GGGGGGAAGAGCACATTGAGGAGCCAGA  236
       ||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  AAGCCTTGGGCGTTGGTGTGCGGGGGGGAAGAGCACATTGAGGAGCCAGA  250

seq1  AGGGGGTGGCAGGAGGGAGCAGTAGCCCCAACAGCAACAGCACCCGCTGC  286
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGGCAGGA-GGAGCAGTAGCCCCAACAGCAACAGCACCCGCTGC  299

seq1  CATGGGGAGCCAGGCAGCCCCATCACAGCCCAGTGCCTACTGACAGATGA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGAGCCAGGCAGCCCCATCACAGCCCAGTGCCTACTGACAGATGA  349

seq1  GGCAGTCCT-GGGCTGGCCTTATCTGGACCGGGGGTGGGAGGGGCCCCCG  385
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCCTGGGGCTGGCCTTATCTGGACCGGGGGTGGGAGGGGCCCCCG  399

seq1  GGGCCAGTGGGAGGGACAGACGGCCAATGGGGGTGGCCAGGAAGGGGCAT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGTGGGAGGGACAGACGGCCAATGGGGGTGGCCAGGAAGGGGCAT  449

seq1  AGCCTTTGGGATCTGGCTCTGGACTGGGGTTCAGTTCCGTCTTTCTTCCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGGGATCTGGCTCTGGACTGGGGTTCAGTTCCGTCTTTCTTCCC  499

seq1  TTGGCGCCAGGGAAAAAAGAGCCGGAGCAGCAGGAGGCCCAGAAGTACAC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGCCAGGGAAAAAAGAGCCGGAGCAGCAGGAGGCCCAGAAGTACAC  549

seq1  AATGTTTTATTGAAAAAAGTCAGGCTCAGCTTGGCCGGCTCCATTCCACT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTATTGAAAAAAGTCAGGCTCAGCTTGGCCGGCTCCATTCCACT  599

seq1  TGGCTTGATGAGGGCCTCTGCCCACAGCAGCCTGGGCCAGGTCTTCCTGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGATGAGGGCCTCTGCCCACAGCAGCCTGGGCCAGGTCTTCCTGC  649

seq1  AGGCAGGCCCAGCTCAGCTCCCCCTCTTACTGTGCCCCTCTTCCCCTTTC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCCCAGCTCAGCTCCCCCTCTTACTGTGCCCCTCTTCCCCTTTC  699

seq1  TGAAATGATGACATCCAAACAATAAATATACAATAAATAGCACTTGTGGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGATGACATCCAAACAATAAATATACAATAAATAGCACTTGTGGG  749

seq1  CCCATCTGGGAATTCAAATCCCGTATCAACCCTCACCAGTCTTCTCTAGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGGGAATTCAAATCCCGTATCAACCCTCACCAGTCTTCTCTAGT  799

seq1  CAGGATAGGCCTCTATTGGAGTATGGGAGGGGACAGTCCCTAAATCCACC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGGCCTCTATTGGAGTATGGGAGGGGACAGTCCCTAAATCCACC  849

seq1  AGGGTCCCCTGGGCCCTCGGATCCATTTCCACTGCAAGGCCCAAGCTTGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCCTGGGCCCTCGGATCCATTTCCACTGCAAGGCCCAAGCTTGG  899

seq1  TTTCCCTGGAGACGTAGCAGAGCTGGTCCAAAGCAAGGCTGGGCAAAGCA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGGAGACGTAGCAGAGCTGGTCCAAAGCAAGGCTGGGCAAAGCA  949

seq1  GAACTGGCAAGTAGGTGCAAGGCCGGGCACTGTTGTCCTAGACACCCCAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCAAGTAGGTGCAAGGCCGGGCACTGTTGTCCTAGACACCCCAA  999

seq1  CTCCAGGCCACAAGACTCCATCGGGGCTCAGGAATAGATGGTGATGACTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCCACAAGACTCCATCGGGGCTCAGGAATAGATGGTGATGACTT  1049

seq1  CCCGGCCGCCGCCACGCACCAACAACACCCGTTCAAGGCCCTCGGTTAGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCGCCGCCACGCACCAACAACACCCGTTCAAGGCCCTCGGTTAGG  1099

seq1  ACTTCAAGGAATTC  1099
      ||||||||||||||
seq2  ACTTCAAGGAATTC  1113