BAC Information

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BAC

Clone NameB6Ng01-323D15
Chromosome8 (Build37)
Map Location 107,743,373 - 107,744,546
singlet/doubletsinglet
Overlap genenone
Upstream geneTk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb
Downstream geneD230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323D15.bB6Ng01-323D15.g
ACCGA111863GA111864
length1,153524
definitionB6Ng01-323D15.b B6Ng01-323D15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggacagccagggctatacagagaaaccctgtttcgaaaaacc
aaaaaaaaaaaaaaaaaaaaaaaaggtacaattttttaaaaattgcagtg
cctatacatttcccccttaacactgagtctccatacccaccaggccacta
tatctaaaagatcactttgatctttaaccaaaaaatttctcaaacctcct
aatctgttggccacttcttgtcctggtccaaatgtcttccatttgattga
cataatacattgagcactgctcctgtctcacccatgctgtagcccttatc
tgatgctctttcaaacctgctaagctctgaccagccggctatgtgcattc
agtatcttctctagttgattgtagctttcggcttggaagtctcctcaggt
tgattgactctaactacccagaccagcacagacagtgcaactgccaaggc
ttcctatataatttaaaggttgctactacattggatcaattttgggcata
gactaggttccaggaggtcagagacaatgtctttttagggcagtcacttt
atattgtttcttctaaactatcctcaatgattaagtgtcctgcttgcaca
tgtattatatgtaatactgtgtatgcctagtgcccatggagttcagaaaa
gattgttctagccactgctagctggaagtaggatggttattgagacacca
tgtgaaagctgagaaccaaaccttgatccactgcaggagcaagtactttt
aactgctgagctatctttccatcctcagatactttaatactttttaaaac
cattaatatagtttcaacattttctttgagctctttccattttataattc
attactgatttataatctcgctaacattgatagcagcaatataagcaatt
ttaaaattccttcgtagctagctaccttaaatattgtcattttaatatat
agtgtaggtcaaagctcccccctcccctccccaaagggcagtgctgtggc
attgtctgaaactctgggtttctatttatcagagtctcatttaagccacc
agagctcttctatcgactgcctaagtcactacttcagtaaagcatctagt
ctgtcaatcagttatatccagcagctcaagatccactgtaacagttaatg
gct
tggggattttcagagtatatatgtaaatgctagaccctgatcgaagggac
tggttggctggttggtggttgaatgctgttggttgctgtttgtcaagtcg
tagtgtatgaagagacaaaaataagaaatttgatatcctaatggcaaagc
tcaaatttgccccaaggaactctttgtcccctaatcagcaggaagtagtc
taatgatgtcatcacttcctttcctaccccctggctttatttgaggatat
ctctcttctcctccttctcctcctcctcctcttcctcctcctccttctcc
tccttcttcttcctcttcttcctcttcctcttcttcttcttcttcttctt
cttcttcttctctctctctctctctctctctctctctctctctctctctc
tctctcttgtgataggtggtgttatagatccgtctcccttactacccggg
tgagtgactcattctgtgtgtgaatgagaaagttatggcagatgttttct
tgtctctctcgaaagatatggccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107743373_107744546
seq2: B6Ng01-323D15.b_49_1201 (reverse)

seq1  AGCCATTTTTACTGTGTTAACAGTGGGATCTTTGAGCTGCT-GATATAAA  49
      |||||  || ||||   | ||||| ||||| |||||||||| ||||| ||
seq2  AGCCA--TTAACTG---TTACAGT-GGATC-TTGAGCTGCTGGATAT-AA  42

seq1  CTGGATTGACCAGGACCTAGATGCCTTTACCTGAGGTAGTTGACCTTTAG  99
      || |||||| |||   ||||||| ||||| |||| |||| ||||  ||| 
seq2  CT-GATTGA-CAG--ACTAGATG-CTTTA-CTGAAGTAG-TGAC--TTA-  82

seq1  GGCAGTCGATTAAGAGAGGCTCCTGGTGGCTTAAATGAGACTCCTGATAA  149
      ||||||||||  |||   ||| |||||||||||||||||||| |||||||
seq2  GGCAGTCGAT--AGAAGAGCT-CTGGTGGCTTAAATGAGACT-CTGATAA  128

seq1  ATAGAAACCCAGAGTTTCAGACAATGCCACAAGCACTGCCCTTTGGG--G  197
      |||||||||||||||||||||||||||||| ||||||||||||||||  |
seq2  ATAGAAACCCAGAGTTTCAGACAATGCCAC-AGCACTGCCCTTTGGGGAG  177

seq1  GGGGGGGGGGAGCTTTGGACCTAACACTATATATTAAAATGACAATATTT  247
      ||| |||||||||||| ||||| |||||||||||||||||||||||||||
seq2  GGGAGGGGGGAGCTTT-GACCT-ACACTATATATTAAAATGACAATATTT  225

seq1  AAGGTAGCTAGCTACGAAGGAATTTTAAAATTGCTTATATTGCTGCTATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCTAGCTACGAAGGAATTTTAAAATTGCTTATATTGCTGCTATC  275

seq1  AATGTTAGCGAGATTATAAATCAGTAATGAATTATAAAATGGAAAGAGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGCGAGATTATAAATCAGTAATGAATTATAAAATGGAAAGAGCT  325

seq1  CAAAGAAAATGTTGAAACTATATTAATGGTTTTAAAAAGTATTAAAGTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAATGTTGAAACTATATTAATGGTTTTAAAAAGTATTAAAGTAT  375

seq1  CTGAGGATGGAAAGATAGCTCAGCAGTTAAAAGTACTTGCTCCTGCAGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATGGAAAGATAGCTCAGCAGTTAAAAGTACTTGCTCCTGCAGTG  425

seq1  GATCAAGGTTTGGTTCTCAGCTTTCACATGGTGTCTCAATAACCATCCTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGTTTGGTTCTCAGCTTTCACATGGTGTCTCAATAACCATCCTA  475

seq1  CTTCCAGCTAGCAGTGGCTAGAACAATCTTTTCTGAACTCCATGGGCACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCTAGCAGTGGCTAGAACAATCTTTTCTGAACTCCATGGGCACT  525

seq1  AGGCATACACAGTATTACATATAATACATGTGCAAGCAGGACACTTAATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATACACAGTATTACATATAATACATGTGCAAGCAGGACACTTAATC  575

seq1  ATTGAGGATAGTTTAGAAGAAACAATATAAAGTGACTGCCCTAAAAAGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGATAGTTTAGAAGAAACAATATAAAGTGACTGCCCTAAAAAGAC  625

seq1  ATTGTCTCTGACCTCCTGGAACCTAGTCTATGCCCAAAATTGATCCAATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCTGACCTCCTGGAACCTAGTCTATGCCCAAAATTGATCCAATG  675

seq1  TAGTAGCAACCTTTAAATTATATAGGAAGCCTTGGCAGTTGCACTGTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCAACCTTTAAATTATATAGGAAGCCTTGGCAGTTGCACTGTCTG  725

seq1  TGCTGGTCTGGGTAGTTAGAGTCAATCAACCTGAGGAGACTTCCAAGCCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCTGGGTAGTTAGAGTCAATCAACCTGAGGAGACTTCCAAGCCG  775

seq1  AAAGCTACAATCAACTAGAGAAGATACTGAATGCACATAGCCGGCTGGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACAATCAACTAGAGAAGATACTGAATGCACATAGCCGGCTGGTC  825

seq1  AGAGCTTAGCAGGTTTGAAAGAGCATCAGATAAGGGCTACAGCATGGGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTAGCAGGTTTGAAAGAGCATCAGATAAGGGCTACAGCATGGGTG  875

seq1  AGACAGGAGCAGTGCTCAATGTATTATGTCAATCAAATGGAAGACATTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAGCAGTGCTCAATGTATTATGTCAATCAAATGGAAGACATTTG  925

seq1  GACCAGGACAAGAAGTGGCCAACAGATTAGGAGGTTTGAGAAATTTTTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGACAAGAAGTGGCCAACAGATTAGGAGGTTTGAGAAATTTTTTG  975

seq1  GTTAAAGATCAAAGTGATCTTTTAGATATAGTGGCCTGGTGGGTATGGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGATCAAAGTGATCTTTTAGATATAGTGGCCTGGTGGGTATGGAG  1025

seq1  ACTCAGTGTTAAGGGGGAAATGTATAGGCACTGCAATTTTTAAAAAATTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGTTAAGGGGGAAATGTATAGGCACTGCAATTTTTAAAAAATTG  1075

seq1  TACC-TTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAAACAGGGTTTCT  1146
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAAACAGGGTTTCT  1125

seq1  CTGTATAGCCCTGGCTGTCCTGGAATTC  1174
      ||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTCCTGGAATTC  1153