BAC Information

Click to search

BAC

Clone NameB6Ng01-323D20
Chromosome8 (Build37)
Map Location 38,581,012 - 38,735,719
singlet/doubletdoublet
Overlap geneSgcz
Upstream geneDlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323D20.bB6Ng01-323D20.g
ACCGA111873GA111874
length1,1941,105
definitionB6Ng01-323D20.b B6Ng01-323D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,734,542 - 38,735,719)(38,581,012 - 38,582,121)
sequence
gaattcttggacttttcattggtagacagaactcattgaactagctggac
cacagcctgtaagctactctaataaatcccatatattagaaaaagtaagt
tgaaacttggtgttcttgcagaggtgacaggcaaagagatgtatatagta
gtatatatacatatattagaatatgtgcatatattagtaataaaaacata
tatcaacctagagtcacatgcctggaagatatggggtaataagatatcca
tggattcataaaactatcttaaatctctgaaggtcatgaccaacatgatt
taccagagaatgcccaacaccggaaccaaaagttaatatcctgaaggaat
gaggtaaaaaagagtgtgtgataaagtaacatagttataatagcttagat
atccaggaaagaaggaaatgggtaggtggtttacataaaaccaattttga
gaaataaagaggacacatctccctcaactccaaaaccagaaatcaaagaa
gacaaagaagcagctgggattatagacaataggcgctcaaagttctgctc
tcctgactccccttcacctgttctcaccacagttgaaggcattattctga
tcctttcaaaagttgattatttccttaattctgtacggtgactatgactg
aatatatgtgatctcaccatcctttcttttattaattaaatgatgatcta
catttaggagaatatattacagacattataaaaagtgccatcagaaaagt
acaaatgcatttcatcttctaagcagacaaaaacacattcattctagtga
ggtatgactggggcagtagaataaaacaggcaagattttatcttacttta
atgtgaaatatttacaaatatgaaatccatatattatttttatatcataa
ctgagatatacagtaaatgcaataatttcagggggatgaaataagatcta
gagtaaagaggaaacctttcattttttagaaagccagtttaaacagattt
tcctttcattaccactgcaactgctatttttcccacagtttcagtgactt
taacttcatgcatactaaatgaactgctcctacctatggagtacatcttt
cctcaccctgctccaccttacttattgctataaagaatatttctgtttcc
ttatttcatatcctgcttgaaatagcaccactaggtccaagggc

gaattcccactgccaaaattttgctttgtttacacccaaaagaaatagac
ctcacccaaactaaacataagacacaatagactgatttttgaatagatat
gttatctacagttcataggaaggagtccttttaagtagaaaatggttatt
ttttttttttacataaagcaagatagagtacaaaagcacagcttttgtaa
ttttggtaattttgcaattgtacaaacatattgcatagtatgtgtacgaa
aatagttccatttcttcatatatctatatatacaagaaaacatttacatg
aaagatacaaaacaaaataaattaatcatggacctggtttaaaggattgt
ataaataaagaaacaaactccaaattgtgtctccatttttaggaaatatc
cttgcacatctttaaccctgtttgacttcataaatattcaaataaatgaa
atatttaaaactggaaatccaggaagaatcacagttcattgtactgccca
tccgttaatgttggtctttactttcccgaagactgacccacatcaattaa
catttaaaaaatagccctctagttctaaaagtatttaatattagttatag
tttccagagatatatttggcaagcaatgagaattgaaacccaaccaagtt
aacctgtcctgaggccattttgggtgtagtctctatttccttgttttaag
agtactgaagcattcattacctatgtataaaaatatgcagagcatactac
tgaagtgttctttctacaactaaagcagtaactaatggctgcagctcata
ttcctgccagaagtatgtgttgtaattataacccctacttattttaataa
atcagttgaagcaatagtgctctagagctaaatacaatagaaatcctgat
ctttggtctttgacatttcagtgactacttgactgcagtttaaagcaatt
tctacaaaagtgttcagtgagatcattcattaatttataattggggatag
atatgatattattttccttttgatatggtatttctgcagtatcattaaca
taatatatgctaatgtatgcagcaaatgactatgatgtctatgaagggtt
ccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38734542_38735719
seq2: B6Ng01-323D20.b_44_1237 (reverse)

seq1  GCCCT--GACCTA---GTGCTA-TTCAAGCCAGGATTATGAATTAAGGAA  44
      |||||  ||||||   |||||| |||||| ||||| |||||| |||||||
seq2  GCCCTTGGACCTAGTGGTGCTATTTCAAG-CAGGA-TATGAAATAAGGAA  48

seq1  ACAG-AATAT--CTTATAGCATTAAAGTAA-GTGAAGCA-GGTGAG--AA  87
      |||| |||||   |||||||| | |||||| ||| |||| ||||||  ||
seq2  ACAGAAATATTCTTTATAGCAAT-AAGTAAGGTGGAGCAGGGTGAGGAAA  97

seq1  GATGTAACTCCATA-GTA-GAGCAGTTCA-TTAGTATGCATGAAGTTAAA  134
      ||||| |||||||| ||| |||||||||| ||||||||||||||||||||
seq2  GATGT-ACTCCATAGGTAGGAGCAGTTCATTTAGTATGCATGAAGTTAAA  146

seq1  GTCACTG-AACTGTGGG-AAAATAGCAGTTGCAGT-GTAATGAAA-GAAA  180
      ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||
seq2  GTCACTGAAACTGTGGGAAAAATAGCAGTTGCAGTGGTAATGAAAGGAAA  196

seq1  ATCTGTTTAAACTGGCTTTCTAAAAAATGAAAGGTTTCCTCTTTACTCTA  230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTAAACTGGCTTTCTAAAAAATGAAAGGTTTCCTCTTTACTCTA  246

seq1  GATCTTATTTCATCCCCCTGAAATTATTGCATTTACTGTATATCTCAGTT  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATTTCATCCCCCTGAAATTATTGCATTTACTGTATATCTCAGTT  296

seq1  ATGATATAAAAATAATATATGGATTTCATATTTGTAAATATTTCACATTA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATAAAAATAATATATGGATTTCATATTTGTAAATATTTCACATTA  346

seq1  AAGTAAGATAAAATCTTGCCTGTTTTATTCTACTGCCCCAGTCATACCTC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGATAAAATCTTGCCTGTTTTATTCTACTGCCCCAGTCATACCTC  396

seq1  ACTAGAATGAATGTGTTTTTGTCTGCTTAGAAGATGAAATGCATTTGTAC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATGAATGTGTTTTTGTCTGCTTAGAAGATGAAATGCATTTGTAC  446

seq1  TTTTCTGATGGCACTTTTTATAATGTCTGTAATATATTCTCCTAAATGTA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGATGGCACTTTTTATAATGTCTGTAATATATTCTCCTAAATGTA  496

seq1  GATCATCATTTAATTAATAAAAGAAAGGATGGTGAGATCACATATATTCA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCATTTAATTAATAAAAGAAAGGATGGTGAGATCACATATATTCA  546

seq1  GTCATAGTCACCGTACAGAATTAAGGAAATAATCAACTTTTGAAAGGATC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTCACCGTACAGAATTAAGGAAATAATCAACTTTTGAAAGGATC  596

seq1  AGAATAATGCCTTCAACTGTGGTGAGAACAGGTGAAGGGGAGTCAGGAGA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATGCCTTCAACTGTGGTGAGAACAGGTGAAGGGGAGTCAGGAGA  646

seq1  GCAGAACTTTGAGCGCCTATTGTCTATAATCCCAGCTGCTTCTTTGTCTT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTTTGAGCGCCTATTGTCTATAATCCCAGCTGCTTCTTTGTCTT  696

seq1  CTTTGATTTCTGGTTTTGGAGTTGAGGGAGATGTGTCCTCTTTATTTCTC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTTCTGGTTTTGGAGTTGAGGGAGATGTGTCCTCTTTATTTCTC  746

seq1  AAAATTGGTTTTATGTAAACCACCTACCCATTTCCTTCTTTCCTGGATAT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGTTTTATGTAAACCACCTACCCATTTCCTTCTTTCCTGGATAT  796

seq1  CTAAGCTATTATAACTATGTTACTTTATCACACACTCTTTTTTACCTCAT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTATTATAACTATGTTACTTTATCACACACTCTTTTTTACCTCAT  846

seq1  TCCTTCAGGATATTAACTTTTGGTTCCGGTGTTGGGCATTCTCTGGTAAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGGATATTAACTTTTGGTTCCGGTGTTGGGCATTCTCTGGTAAA  896

seq1  TCATGTTGGTCATGACCTTCAGAGATTTAAGATAGTTTTATGAATCCATG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTGGTCATGACCTTCAGAGATTTAAGATAGTTTTATGAATCCATG  946

seq1  GATATCTTATTACCCCATATCTTCCAGGCATGTGACTCTAGGTTGATATA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTATTACCCCATATCTTCCAGGCATGTGACTCTAGGTTGATATA  996

seq1  TGTTTTTATTACTAATATATGCACATATTCTAATATATGTATATATACTA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTACTAATATATGCACATATTCTAATATATGTATATATACTA  1046

seq1  CTATATACATCTCTTTGCCTGTCACCTCTGCAAGAACACCAAGTTTCAAC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACATCTCTTTGCCTGTCACCTCTGCAAGAACACCAAGTTTCAAC  1096

seq1  TTACTTTTTCTAATATATGGGATTTATTAGAGTAGCTTACAGGCTGTGGT  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTCTAATATATGGGATTTATTAGAGTAGCTTACAGGCTGTGGT  1146

seq1  CCAGCTAGTTCAATGAGTTCTGTCTACCAATGAAAAGTCCAAGAATTC  1178
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGTTCAATGAGTTCTGTCTACCAATGAAAAGTCCAAGAATTC  1194


seq1: chr8_38581012_38582121
seq2: B6Ng01-323D20.g_63_1167

seq1  GAATTCCCACTGCCAAAATTTTGCTTTGTTTACACCCAAAAGAAATAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTGCCAAAATTTTGCTTTGTTTACACCCAAAAGAAATAGAC  50

seq1  CTCACCCAAACTAAACATAAGACACAATAGACTGATTTTTGAATAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCAAACTAAACATAAGACACAATAGACTGATTTTTGAATAGATAT  100

seq1  GTTATCTACAGTTCATAGGAAGGAGTCCTTTTAAGTAGAAAATGGTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTACAGTTCATAGGAAGGAGTCCTTTTAAGTAGAAAATGGTTATT  150

seq1  TTTTTTTTTTACATAAAGCAAGATAGAGTACAAAAGCACAGCTTTTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTACATAAAGCAAGATAGAGTACAAAAGCACAGCTTTTGTAA  200

seq1  TTTTGGTAATTTTGCAATTGTACAAACATATTGCATAGTATGTGTACGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTAATTTTGCAATTGTACAAACATATTGCATAGTATGTGTACGAA  250

seq1  AATAGTTCCATTTCTTCATATATCTATATATACAAGAAAACATTTACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCCATTTCTTCATATATCTATATATACAAGAAAACATTTACATG  300

seq1  AAAGATACAAAACAAAATAAATTAATCATGGACCTGGTTTAAAGGATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACAAAACAAAATAAATTAATCATGGACCTGGTTTAAAGGATTGT  350

seq1  ATAAATAAAGAAACAAACTCCAAATTGTGTCTCCATTTTTAGGAAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAGAAACAAACTCCAAATTGTGTCTCCATTTTTAGGAAATATC  400

seq1  CTTGCACATCTTTAACCCTGTTTGACTTCATAAATATTCAAATAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACATCTTTAACCCTGTTTGACTTCATAAATATTCAAATAAATGAA  450

seq1  ATATTTAAAACTGGAAATCCAGGAAGAATCACAGTTCATTGTACTGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAACTGGAAATCCAGGAAGAATCACAGTTCATTGTACTGCCCA  500

seq1  TCCGTTAATGTTGGTCTTTACTTTCCCGAAGACTGACCCACATCAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTAATGTTGGTCTTTACTTTCCCGAAGACTGACCCACATCAATTAA  550

seq1  CATTTAAAAAATAGCCCTCTAGTTCTAAAAGTATTTAATATTAGTTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAAATAGCCCTCTAGTTCTAAAAGTATTTAATATTAGTTATAG  600

seq1  TTTCCAGAGATATATTTGGCAAGCAATGAGAATTGAAACCCAACCAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGATATATTTGGCAAGCAATGAGAATTGAAACCCAACCAAGTT  650

seq1  AACCTGTCCTGAGGCCATTTTGGGTGTAGTCTCTATTTCCTTGTTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCCTGAGGCCATTTTGGGTGTAGTCTCTATTTCCTTGTTTTAAG  700

seq1  AGTACTGAAGCATTCATTACCTATGTATAAAAATATGCAGAGCATACTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGAAGCATTCATTACCTATGTATAAAAATATGCAGAGCATACTAC  750

seq1  TGAAGTGTTCTTTCTACAACTAAAGCAGTAACTAATGGCTGCAGCTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTTCTTTCTACAACTAAAGCAGTAACTAATGGCTGCAGCTCATA  800

seq1  TTCCTGCCAGAAGTATGTGTTGTAATTATAACCCCTACTTATTTTAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCAGAAGTATGTGTTGTAATTATAACCCCTACTTATTTTAATAA  850

seq1  ATCAGTTGAAGCAATAGTGCTCTAGAGCTAAATACAATAGAAATCCTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTGAAGCAATAGTGCTCTAGAGCTAAATACAATAGAAATCCTGAT  900

seq1  CTTTGGTCTTTGACATTTCAGTGACTACTTGACTGCAGTTTAAAGCAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCTTTGACATTTCAGTGACTACTTGACTGCAGTTTAAAGCAATT  950

seq1  TCTACAAAAGTGTTCAGTGAGATCATTCATTAATTTATAATTGGGGATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAAGTGTTCAGTGAGATCATTCATTAATTTATAATTGGGGATAG  1000

seq1  ATATGATATTATTTTCCTTTTTGATAATGGTA-TTCTGCAGTAATCATTA  1049
      ||||||||||||||||| ||||||| |||||| ||||||||| |||||||
seq2  ATATGATATTATTTTCC-TTTTGAT-ATGGTATTTCTGCAGT-ATCATTA  1047

seq1  CCATAATATATGCTAATGTATGCAGCAAATGACTTAATGAATGTCTATGA  1099
       |||||||||||||||||||||||||||||||||  ||| ||||||||||
seq2  ACATAATATATGCTAATGTATGCAGCAAATGACT--ATG-ATGTCTATGA  1094

seq1  AGGGTCCCATG  1110
      ||||| |||||
seq2  AGGGTTCCATG  1105


| Home | SequenceCutter | Blast | Download |