BAC Information

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BAC

Clone NameB6Ng01-323E17
Chromosome8 (Build37)
Map Location 23,516,652 - 23,647,122
singlet/doubletdoublet
Overlap geneLOC547006, Mrps31, AI316807, Slc20a2
Upstream geneLOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15
Downstream geneLOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323E17.bB6Ng01-323E17.g
ACCGA111910GA111911
length1,0771,083
definitionB6Ng01-323E17.b B6Ng01-323E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,646,046 - 23,647,122)(23,516,652 - 23,517,738)
sequence
gaattctagacgagtcatacaaattcccaaccaagtgagctttgaaattc
ccctaaccacaaaccaaaaaggaaacaagagctgcaaccaccacccccaa
acaaaaccagagaggagagaaaccgaagagatcgtgttattcagacgaac
cctcaaattgccttggtaaacccaaaatctagttgaggtttaaacaaaac
aaaacaaaacccttttactttttgaataaggagccaaaggccgaggatgg
aaaaagtggagactggacagctacacggactgacagcggtgggacgccac
actccctctgtggggactcagagggcctcttagagaagcagaaaatcacc
cacgagggctccccaggaggaagagtccctactgaggaggactcaagtct
gtcagggtctctatttctcccagagttttaacacttcttctcacaatacc
ttaaagcagtgggtctcagccttcctaatgcttcaaccctttagtgcagt
tcctcatgttgtggtgaccccaactatgctacttcataactgtaattttg
ttgctgtcatgagtcataatgtaagtgcctgtgtttttcagtggtcttat
gtgacctccatgaaatgggacccacaggttaaaaactactaccttaatga
gaaaattttcaattttaatggattataatgaaattatagattaaattata
aaattgcaaggttggttataggttaaaaaatttaaaccatgatatattag
agaatatgcatattctttaataaatttaacatatccctaaaacaacattt
caatattctacgaggggtaacctgtgtgccaagtatactttaaaatggct
aaaaatttgagagactagaagtttgcttgtaaaaaaaaaaaaatacacaa
agtacagtcaatgaaaatggtatggtagacacaaaaaacaaagccagctt
caaaacaggtaaagacggcacttgtggaatagccatgggagcaaaggaga
gagtgcgcacacgtgctatgcgtgtacacacaagtgcatacacgtcccac
tggtgccaatggaaggaagcctactca
gaattctaaacctgtgggtcatgatgggggtcgcataaaagatagcctcc
atatgagatatttacactatgatccatgactagcaaaattagttatgaaa
tggcaatgaaatcattttatagttgggatggtcacaacatgaggaatggt
attaaagggtctcatcattacaaggttgatgtctggacttccagttaaat
gggatgtttgttgaaacatttaatattcccaaagatgtcatttaataggt
tgtaagatgtttagaggactcaaattcataaacaatatgtatttatcagg
ccttactatatgattacaatatttgtatttgactcttcatatgtatttta
cttgggcatgccaaaaaataattttagcacataataaaaataaatttaaa
aagtaaccaaagtgccacagtttgcttaaaaaaatcttttgggaacaaaa
aatatggaaacaacaaaaaatgttgaagacaattatcatagacccatgat
acaattacttgaaattaagtgtactcagttgagaaaaaataaaagacagt
ttatttctttagaatttgagggatgcttagtaacacaaaggattaaaagg
taacatttgccatatagacttatggtggtgatatttcttctctgtctgtc
tgtccatctgtctgtctgtctctttctctctaaatggctgagtgacatgt
aatttgttctttttaaaaaaatattatttatttatttatttatttactat
cccagactgttttctaacaagtaacctgagcatcataatttgcaccaagt
cacccttccacgatgagcctattaaaagtggaaagaaaaaatagtaagtg
tttaatgtgctcactttgggaagggaggacagggatctagaaaatgtctc
aagtccacctttggggtcctgaagtaaatcaagctcaatagaaggacgca
cacatcccagcagttcttctctgggtgtgggcactgtccacattacctga
gttttagcttccctcataagtcgtttgatagatgtttctgaaatccattc
agaagacaagttagttctcttggcctggtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23646046_23647122
seq2: B6Ng01-323E17.b_41_1117 (reverse)

seq1  TGAGTA-GCCTCCCTCCATTGGCACCAGTGGGACGTGTATGCACTTGTGT  49
      |||||| || ||| ||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGCTTCCTTCCATTGGCACCAGTGGGACGTGTATGCACTTGTGT  50

seq1  GTACACGCATAGCACGTGTGCGCACTCTCTCCCTTGCTCCCATGGCTATT  99
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTACACGCATAGCACGTGTGCGCACTCTCTCCTTTGCTCCCATGGCTATT  100

seq1  CCCACAAGTGCCGTCTTTACCTGTTTTGAAGCTGGCTTTGTTTTTTGTGT  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCACAAGTGCCGTCTTTACCTGTTTTGAAGCTGGCTTTGTTTTTTGTGT  149

seq1  CTACCATACCATTTTCATTGACTGTACTTTGTGTATTTTTTTTTTTTTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATACCATTTTCATTGACTGTACTTTGTGTATTTTTTTTTTTTTAC  199

seq1  AAGCAAACTTCTAGTCTCTCAAATTTTTAGCCATTTTAAAGTATACTTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACTTCTAGTCTCTCAAATTTTTAGCCATTTTAAAGTATACTTGG  249

seq1  CACACAGGTTACCCCTCGTAGAATATTGAAATGTTGTTTTAGGGATATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGTTACCCCTCGTAGAATATTGAAATGTTGTTTTAGGGATATGT  299

seq1  TAAATTTATTAAAGAATATGCATATTCTTTAATATATCATGGTTTAAATT  349
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAATTTATTAAAGAATATGCATATTCTCTAATATATCATGGTTTAAATT  349

seq1  TTTTAACCTATAACCAACCTTGCAATTTTATAATTTAATCTATAATTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCTATAACCAACCTTGCAATTTTATAATTTAATCTATAATTTCA  399

seq1  TTATAATCCATTAAAATTGAAAATTTTCTCATTAAGGTAGTAGTTTTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATCCATTAAAATTGAAAATTTTCTCATTAAGGTAGTAGTTTTTAA  449

seq1  CCTGTGGGTCCCATTTCATGGAGGTCACATAAGACCACTGAAAAACACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGTCCCATTTCATGGAGGTCACATAAGACCACTGAAAAACACAG  499

seq1  GCACTTACATTATGACTCATGACAGCAACAAAATTACAGTTATGAAGTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTACATTATGACTCATGACAGCAACAAAATTACAGTTATGAAGTAG  549

seq1  CATAGTTGGGGTCACCACAACATGAGGAACTGCACTAAAGGGTTGAAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTGGGGTCACCACAACATGAGGAACTGCACTAAAGGGTTGAAGCA  599

seq1  TTAGGAAGGCTGAGACCCACTGCTTTAAGGTATTGTGAGAAGAAGTGTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGGCTGAGACCCACTGCTTTAAGGTATTGTGAGAAGAAGTGTTA  649

seq1  AAACTCTGGGAGAAATAGAGACCCTGACAGACTTGAGTCCTCCTCAGTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGGGAGAAATAGAGACCCTGACAGACTTGAGTCCTCCTCAGTAG  699

seq1  GGACTCTTCCTCCTGGGGAGCCCTCGTGGGTGATTTTCTGCTTCTCTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTCCTCCTGGGGAGCCCTCGTGGGTGATTTTCTGCTTCTCTAAG  749

seq1  AGGCCCTCTGAGTCCCCACAGAGGGAGTGTGGCGTCCCACCGCTGTCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCTGAGTCCCCACAGAGGGAGTGTGGCGTCCCACCGCTGTCAGT  799

seq1  CCGTGTAGCTGTCCAGTCTCCACTTTTTCCATCCTCGGCCTTTGGCTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTAGCTGTCCAGTCTCCACTTTTTCCATCCTCGGCCTTTGGCTCCT  849

seq1  TATTCAAAAAGTAAAAGGGTTTTGTTTTGTTTTGTTTAAACCTCAACTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAAAGTAAAAGGGTTTTGTTTTGTTTTGTTTAAACCTCAACTAG  899

seq1  ATTTTGGGTTTACCAAGGCAATTTGAGGGTTTGTCTGAATAACACGATCT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTTGGGTTTACCAAGGCAATTTGAGGGTTCGTCTGAATAACACGATCT  949

seq1  CTTCGGTTTCTCTCCTCTCTGGTTTTGTTTGGGGGTGGTGGTTGCAGCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGTTTCTCTCCTCTCTGGTTTTGTTTGGGGGTGGTGGTTGCAGCTC  999

seq1  TTGTTTCCTTTTTGGTTTGTGGTTAGGGGAATTTCAAAGCTCACTTGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTTTTTGGTTTGTGGTTAGGGGAATTTCAAAGCTCACTTGGTT  1049

seq1  GGGAATTTGTATGACTCGTCTAGAATTC  1077
      ||||||||||||||||||||||||||||
seq2  GGGAATTTGTATGACTCGTCTAGAATTC  1077

seq1: chr8_23516652_23517738
seq2: B6Ng01-323E17.g_63_1145

seq1  GAATTCTAAACCTGTGGGTCATGATGGGGGTCGCATAAAAGATAGCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACCTGTGGGTCATGATGGGGGTCGCATAAAAGATAGCCTCC  50

seq1  ATATGAGATATTTACACTATGATCCATGACTAGCAAAATTAGTTATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGATATTTACACTATGATCCATGACTAGCAAAATTAGTTATGAAA  100

seq1  TGGCAATGAAATCATTTTATAGTTGGGATGGTCACAACATGAGGAATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATGAAATCATTTTATAGTTGGGATGGTCACAACATGAGGAATGGT  150

seq1  ATTAAAGGGTCTCATCATTACAAGGTTGATGTCTGGACTTCCAGTTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGGTCTCATCATTACAAGGTTGATGTCTGGACTTCCAGTTAAAT  200

seq1  GGGATGTTTGTTGAAACATTTAATATTCCCAAAGATGTCATTTAATAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTTTGTTGAAACATTTAATATTCCCAAAGATGTCATTTAATAGGT  250

seq1  TGTAAGATGTTTAGAGGACTCAAATTCATAAACAATATGTATTTATCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATGTTTAGAGGACTCAAATTCATAAACAATATGTATTTATCAGG  300

seq1  CCTTACTATATGATTACAATATTTGTATTTGACTCTTCATATGTATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTATATGATTACAATATTTGTATTTGACTCTTCATATGTATTTTA  350

seq1  CTTGGGCATGCCAAAAAATAATTTTAGCACATAATAAAAATAAATTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCATGCCAAAAAATAATTTTAGCACATAATAAAAATAAATTTAAA  400

seq1  AAGTAACCAAAGTGCCACAGTTTGCTTAAAAAAATCTTTTGGGAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACCAAAGTGCCACAGTTTGCTTAAAAAAATCTTTTGGGAACAAAA  450

seq1  AATATGGAAACAACAAAAAATGTTGAAGACAATTATCATAGACCCATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAAACAACAAAAAATGTTGAAGACAATTATCATAGACCCATGAT  500

seq1  ACAATTACTTGAAATTAAGTGTACTCAGTTGAGAAAAAATAAAAGACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACTTGAAATTAAGTGTACTCAGTTGAGAAAAAATAAAAGACAGT  550

seq1  TTATTTCTTTAGAATTTGAGGGATGCTTAGTAACACAAAGGATTAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTTAGAATTTGAGGGATGCTTAGTAACACAAAGGATTAAAAGG  600

seq1  TAACATTTGCCATATAGACTTATGGTGGTGATATTTCTTCTCTGTCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGCCATATAGACTTATGGTGGTGATATTTCTTCTCTGTCTGTC  650

seq1  TGTCCATCTGTCTGTCTGTCTCTTTCTCTCTAAATGGCTGAGTGACATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCTGTCTGTCTGTCTCTTTCTCTCTAAATGGCTGAGTGACATGT  700

seq1  AATTTGTTCTTTTTAAAAAAATATTATTTATTTATTTATTTATTTACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTCTTTTTAAAAAAATATTATTTATTTATTTATTTATTTACTAT  750

seq1  CCCAGACTGTTTTCTAACAAGTAACCTGAGCATCATAATTTGCACCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTGTTTTCTAACAAGTAACCTGAGCATCATAATTTGCACCAAGT  800

seq1  CACCCTTCCACGATGAGCCTATTAAAAGTGGAAAGAAAAAATAGTAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTCCACGATGAGCCTATTAAAAGTGGAAAGAAAAAATAGTAAGTG  850

seq1  TTTAATGTGCTCACTTTGGGAAGGGAGGACAGGGATCTAGAAAATGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTGCTCACTTTGGGAAGGGAGGACAGGGATCTAGAAAATGTCTC  900

seq1  AAGTCCACCTTTGGGGTCCTGAAGTAAATCAAAGCTCAAATAGAAGGACG  950
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  AAGTCCACCTTTGGGGTCCTGAAGTAAATC-AAGCTC-AATAGAAGGACG  948

seq1  CACACATCCCAGCAGTTCTTCTCTGGGTGTGGGCACTGTCACCATTACCT  1000
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  CACACATCCCAGCAGTTCTTCTCTGGGTGTGGGCACTGTCCACATTACCT  998

seq1  GAGTTTTAGCTTCCCCCATAAGGCCGTTTGATAAGATGTTTCTGAAATCC  1050
      ||||||||||||||| ||||| | |||||||| ||||||||||||||| |
seq2  GAGTTTTAGCTTCCCTCATAA-GTCGTTTGAT-AGATGTTTCTGAAAT-C  1045

seq1  CTTTCAGGGAGACAAGTTAGTCCTCT--GGCTGGTGTGC  1087
      | |||| | |||||||||||| ||||  | |||||||||
seq2  CATTCA-GAAGACAAGTTAGTTCTCTTGGCCTGGTGTGC  1083