BAC Information

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BAC

Clone NameB6Ng01-323H07
Chromosome8 (Build37)
Map Location 112,016,995 - 112,143,637
singlet/doubletdoublet
Overlap genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829
Downstream gene2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323H07.bB6Ng01-323H07.g
ACCGA112025GA112026
length1,077632
definitionB6Ng01-323H07.b B6Ng01-323H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,016,995 - 112,018,074)(112,143,006 - 112,143,637)
sequence
gaattccatcattgtttcctttgacctttttcttgctacagtctggtata
tttcataggaataatgaaaccaatgccttctaatttcccttcgaaatact
ctttggaatgaaggcaatctagaaaatgatttgtgagggtttttctttct
gcctaattttagatgcggttttatttgagaaccatctgctaatgatcctg
tggattttcctggagagaaatctcactctcaagaacacatctgtagtgtg
tgatgctcagacggagtttatagttcttattgaataaaggtgtttgtcaa
gatagaacagcaaggcggtgaagttgagaactaggacaaaccaggcaggt
cacttactacagcaaagatggggactcgaagagatgaggccttccgatag
gacatgattcacatgggttttaatctttttggcttgcctagtgtgagaat
tatttgtgatgttcactaatatcccctttggagatcaaaggaagttaggt
gcgattgtataatttctttgaacccagtaaacaatgagcagaaatgaagt
gcttcacttccactttatgaaccaggatggtcttcaccatgttacctgcc
tgccgtcatagcaacagaccacatactagataataggggttccacgaact
gaggaaaataaggagccaagtcaggacaatgtggggcagagctccacacg
atacgcgtagccagagcgaaagcaacctttcttgttttgagctgttgaga
gttagggtttgttggtgtgaaatcacccaacctagccttaccaggtaaga
tggagcgatgtcatcattcccatgatgcacctctatgcatgaagatgtaa
gaggacccagaatgcagaaaaccagaatactgctccataaacattccaag
ttctacacctcatagctattctttcttcttggcttatattaggatggggg
gatgtagccttatcaacaaagaatgagttatttggtgcttctcattctgg
aaccattctgcaggtaagtgtctggggacttcattccaatccttctagtt
agaacatatgatggaaatatttttagg
gaattcttggttcccagctgctggaactgtttgagaaggattaggaggcg
tggccttgctagagaaagtgtttcactgagggtgttgaagtttcaaaagc
ctacaccattcccaggtagctctctctctgacttgtgcttgtgcactgaa
tgtgagttctcagtttctgctctagccacctgtcaccatgccaaccaaaa
caagaagaacaagaagccggcagctttcgttgccctttggaaccacactt
ctgaatcttttctgattttgagcaaaattactttgagaaaattactacat
tcaagggctttgtttttatctcaggggattgctttgtaaagttcttgatc
caaatgttttattgtctttttagtttgttttgtgctgatagagtatcaca
gacagaagtttagggctgggggtacagcttggtgttgggtgcttgattag
tgtggataagactctggattgtattaaagcacaggaagaagaaaagaggg
agggaaaagaagaaaagagaggagaaaaaataaaaggagaaaggaaaaaa
aaccagaagttaactcttctcagttcaggagctggagaagtctgaagtca
tgctgtttggtgagggatgcatgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112016995_112018074
seq2: B6Ng01-323H07.b_44_1120

seq1  GAATTCCATCATTGTTTCCTTTGACCTTTTTCTTGCTACAGTCTGGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCATTGTTTCCTTTGACCTTTTTCTTGCTACAGTCTGGTATA  50

seq1  TTTCATAGGAATAATGAAACCAATGCCTTCTAATTTCCCTTCGAAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGGAATAATGAAACCAATGCCTTCTAATTTCCCTTCGAAATACT  100

seq1  CTTTGGAATGAAGGCAATCTAGAAAATGATTTGTGAGGGTTTTTCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAATGAAGGCAATCTAGAAAATGATTTGTGAGGGTTTTTCTTTCT  150

seq1  GCCTAATTTTAGATGCGGTTTTATTTGAGAACCATCTGCTAATGATCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATTTTAGATGCGGTTTTATTTGAGAACCATCTGCTAATGATCCTG  200

seq1  TGGATTTTCCTGGAGAGAAATCTCACTCTCAAGAACACATCTGTAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTCCTGGAGAGAAATCTCACTCTCAAGAACACATCTGTAGTGTG  250

seq1  TGATGCTCAGACGGAGTTTATAGTTCTTATTGAATAAAGGTGTTTGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCAGACGGAGTTTATAGTTCTTATTGAATAAAGGTGTTTGTCAA  300

seq1  GATAGAACAGCAAGGCGGTGAAGTTGAGAACTAGGACAAACCAGGCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACAGCAAGGCGGTGAAGTTGAGAACTAGGACAAACCAGGCAGGT  350

seq1  CACTTACTACAGCAAAGATGGGGACTCGAAGAGATGAGGCCTTCCGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTACAGCAAAGATGGGGACTCGAAGAGATGAGGCCTTCCGATAG  400

seq1  GACATGATTCACATGGGTTTTAATCTTTTTGGCTTGCCTAGTGTGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGATTCACATGGGTTTTAATCTTTTTGGCTTGCCTAGTGTGAGAAT  450

seq1  TATTTGTGATGTTCACTAATATCCCCTTTGGAGATCAAAGGAAGTTAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGATGTTCACTAATATCCCCTTTGGAGATCAAAGGAAGTTAGGT  500

seq1  GCGATTGTATAATTTCTTTGAACCCAGTAAACAATGAGCAGAAATGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTGTATAATTTCTTTGAACCCAGTAAACAATGAGCAGAAATGAAGT  550

seq1  GCTTCACTTCCACTTTATGAACCAGGATGGTCTTCACCATGTTACCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTTCCACTTTATGAACCAGGATGGTCTTCACCATGTTACCTGCC  600

seq1  TGCCGTCATAGCAACAGACCACATACTAGATAATAGGGGTTCCACGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTCATAGCAACAGACCACATACTAGATAATAGGGGTTCCACGAACT  650

seq1  GAGGAAAATAAGGAGCCAAGTCAGGACAATGTGGGGCAGAGCTCCACACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATAAGGAGCCAAGTCAGGACAATGTGGGGCAGAGCTCCACACG  700

seq1  ATACGCGTAGCCAGAGCGAAAGCAACCTTTCTTGTTTTGAGCTGTTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCGTAGCCAGAGCGAAAGCAACCTTTCTTGTTTTGAGCTGTTGAGA  750

seq1  GTTAGGGTTTGTTGGTGTGAAATCACCCAACCTAGCCTTACCAGGTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGTTTGTTGGTGTGAAATCACCCAACCTAGCCTTACCAGGTAAGA  800

seq1  TGGAGCGATGTCATCATTCCCATGATGCACCTCTATGCATGAAGATGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGATGTCATCATTCCCATGATGCACCTCTATGCATGAAGATGTAA  850

seq1  GAGGACCCAGAATGCAGAAAACCAGAATACTGCTCCATAAAACATTCCAA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGGACCCAGAATGCAGAAAACCAGAATACTGCTCCAT-AAACATTCCAA  899

seq1  GTTCTACACCTCATAGCTATTCTTTCTTCTTGGCTTATATTAGGGATGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  GTTCTACACCTCATAGCTATTCTTTCTTCTTGGCTTATATTAGGATGGGG  949

seq1  GGATGTAG-CTTATC-ACAAAGAATGAG-TATTTGGTGGCTTCTCATTCT  997
      |||||||| |||||| |||||||||||| |||||||| ||||||||||| 
seq2  GGATGTAGCCTTATCAACAAAGAATGAGTTATTTGGT-GCTTCTCATTC-  997

seq1  TGGAACCATTCTGCAGGTAAGTGTCTGGGGGAACTTCA-TCCAA-CCCTC  1045
      ||||||||||||||||||||||||||||||  |||||| ||||| || ||
seq2  TGGAACCATTCTGCAGGTAAGTGTCTGGGG--ACTTCATTCCAATCCTTC  1045

seq1  TAGTTAAGAACATAATGAATGAGATTATTTTTAGG  1080
      ||||| ||||||| ||| |||  | ||||||||||
seq2  TAGTT-AGAACAT-ATG-ATGGAAATATTTTTAGG  1077

seq1: chr8_112143006_112143637
seq2: B6Ng01-323H07.g_64_695 (reverse)

seq1  CCCCCCCCCCATGCATCCCTCACCAAACAGCATGACTTCAGACTTCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCATGCATCCCTCACCAAACAGCATGACTTCAGACTTCTCCA  50

seq1  GCTCCTGAACTGAGAAGAGTTAACTTCTGGTTTTTTTTCCTTTCTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGAACTGAGAAGAGTTAACTTCTGGTTTTTTTTCCTTTCTCCTTT  100

seq1  TATTTTTTCTCCTCTCTTTTCTTCTTTTCCCTCCCTCTTTTCTTCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCTCCTCTCTTTTCTTCTTTTCCCTCCCTCTTTTCTTCTTCCT  150

seq1  GTGCTTTAATACAATCCAGAGTCTTATCCACACTAATCAAGCACCCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAATACAATCCAGAGTCTTATCCACACTAATCAAGCACCCAACA  200

seq1  CCAAGCTGTACCCCCAGCCCTAAACTTCTGTCTGTGATACTCTATCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGTACCCCCAGCCCTAAACTTCTGTCTGTGATACTCTATCAGCA  250

seq1  CAAAACAAACTAAAAAGACAATAAAACATTTGGATCAAGAACTTTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAACTAAAAAGACAATAAAACATTTGGATCAAGAACTTTACAAA  300

seq1  GCAATCCCCTGAGATAAAAACAAAGCCCTTGAATGTAGTAATTTTCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCCTGAGATAAAAACAAAGCCCTTGAATGTAGTAATTTTCTCAA  350

seq1  AGTAATTTTGCTCAAAATCAGAAAAGATTCAGAAGTGTGGTTCCAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTTGCTCAAAATCAGAAAAGATTCAGAAGTGTGGTTCCAAAGGG  400

seq1  CAACGAAAGCTGCCGGCTTCTTGTTCTTCTTGTTTTGGTTGGCATGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAAAGCTGCCGGCTTCTTGTTCTTCTTGTTTTGGTTGGCATGGTGA  450

seq1  CAGGTGGCTAGAGCAGAAACTGAGAACTCACATTCAGTGCACAAGCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCTAGAGCAGAAACTGAGAACTCACATTCAGTGCACAAGCACAA  500

seq1  GTCAGAGAGAGAGCTACCTGGGAATGGTGTAGGCTTTTGAAACTTCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAGAGAGCTACCTGGGAATGGTGTAGGCTTTTGAAACTTCAACA  550

seq1  CCCTCAGTGAAACACTTTCTCTAGCAAGGCCACGCCTCCTAATCCTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTGAAACACTTTCTCTAGCAAGGCCACGCCTCCTAATCCTTCTC  600

seq1  AAACAGTTCCAGCAGCTGGGAACCAAGAATTC  632
      ||||||||||||||||||||||||||||||||
seq2  AAACAGTTCCAGCAGCTGGGAACCAAGAATTC  632