BAC Information

Click to search

BAC

Clone NameB6Ng01-323O22
Chromosome8 (Build37)
Map Location 5,384,880 - 5,385,996
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323O22.bB6Ng01-323O22.g
ACCGA112379GA112380
length1,106860
definitionB6Ng01-323O22.b B6Ng01-323O22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagaatctagtagttgttcagtcacatgagtctagttgtttaa
actggtcttctgtagaagttgattccaacagatgtgctggcaagtaagtg
aaatatgttgaacaatgaaaattccttctttcaatgtccttatgtaggtc
gccagtagaaggtgtggcccagattaaaggtgtgtaccaccacacccaga
tctggaatttgctttgttccaggctatcttgaactcagatatctctgcct
cagtctcctgggatttaatgtgtgtgctactttgggcttaagcttttcgt
ggccactatgccttgagatctccatcaaaagatccaggtcagaagattat
gtcttctagcctcaagatctggatcataggtatgttcttcaattctggat
tgtagttcattccaaatgtgctcaagttgaccaccaggaatagccaccat
tcttgatctattggggaaatacaaatcatcatatataccccattgttctc
aactggaaatttaaagttggagataaacacagttcctacagtgtaacagt
gtccacaatattggagttgacatagaaagtggggtcagtcaagatgttct
gtcctgcaaagaggtagaggagatgattttaggttgcaggagacatcctc
caaccacatattattgttgaataacaaatcatcaacatgtccctttctaa
ttattatgtcatctaattttcacatgcagaaagtggagaagacagggctt
tgggactttctttcagccatcaatacaaaattatcacagctgacttacag
ctaccaggtacagaaggaagcagcagcacccagttggcatctcatgccac
ttatgtatatgatttgaggattttttttcatattaattttctgctgacat
ataaaggttggtactattttttataaataataaagggaagaagtacagca
gattgaattaatgagtgtagtgtagttttctatttaacatgctagctcag
tacttaaatacaggagattccatgaaatatattttcaatatatttattcg
agcagatggagagaagtatctctctgaaattaccaactgttgtatttctt
taggac
gaattccctttactacagagcaatagtgataaaaactacatggtattggt
acagagacagacatgttgaacaacagaatagaattgaggatccagaaata
gaaccacacacttttggacacttgatctttgacaaagacgtcaaaaatat
acaatggaaaatagaaagcatcttcaataaatggtgctgatctaactgac
tgtatgtagaaaaatgaaaatagacccatgtttgtcacctagcacaaagc
tcaagttcaagtggatcaaggacctcaacaaaacccgatacactgaatct
aatagaagagaaagtgcgaaagatccttgaactcattggcacagggggaa
atttcctaaacagaactccaatggctcatgctccgagatcaagaattgat
aaatggcacctcgtgaaactggaaagcttctgtaaggcaaaggacatagt
caataagacaaattggcaatgtacactttgggaaaaaatcctcactaact
ccacatctgatagagggctaataaccaaaatatataaagaactcaagaag
ctaatcaccaaaaaaacaaacaacccaatcaaaaaatggtgtatagaact
aaaccaagatttcacaaaggaggaatctcaaatggccgagggaactaaag
ggatctgcaaccctataggtggaacaacaatatgaactaaccagtaaccc
ccagagctcgtgtctctagctgcatatgtatcagaagacggcctagtcag
ccatcagtggaaagagaggcccattggtcttgcaaactttaaatgtctca
gtataggggaacgccagggccaagaatttgggagtgggtgcataggggag
tggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5384880_5385996
seq2: B6Ng01-323O22.b_48_1153

seq1  GAATTCCAAGAATCTAGTAGTTGTTCAGTCACATGAGTCTAGTTGTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAATCTAGTAGTTGTTCAGTCACATGAGTCTAGTTGTTTAA  50

seq1  ACTGGTCTTCTGTAGAAGTTGATTCCAACAGATGTGCTGGCAAGTAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTTCTGTAGAAGTTGATTCCAACAGATGTGCTGGCAAGTAAGTG  100

seq1  AAATATGTTGAACAATGAAAATTCCTTCTTTCAATGTCCTTATGTAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTGAACAATGAAAATTCCTTCTTTCAATGTCCTTATGTAGGTC  150

seq1  GCCAGTAGAAGGTGTGGCCCAGATTAAAGGTGTGTACCACCACACCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAGAAGGTGTGGCCCAGATTAAAGGTGTGTACCACCACACCCAGA  200

seq1  TCTGGAATTTGCTTTGTTCCAGGCTATCTTGAACTCAGATATCTCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATTTGCTTTGTTCCAGGCTATCTTGAACTCAGATATCTCTGCCT  250

seq1  CAGTCTCCTGGGATTTAATGTGTGTGCTACTTTGGGCTTAAGCTTTTCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCTGGGATTTAATGTGTGTGCTACTTTGGGCTTAAGCTTTTCGT  300

seq1  GGCCACTATGCCTTGAGATCTCCATCAAAAGATCCAGGTCAGAAGATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTATGCCTTGAGATCTCCATCAAAAGATCCAGGTCAGAAGATTAT  350

seq1  GTCTTCTAGCCTCAAGATCTGGATCATAGGTATGTTCTTCAATTCTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAGCCTCAAGATCTGGATCATAGGTATGTTCTTCAATTCTGGAT  400

seq1  TGTAGTTCATTCCAAATGTGCTCAAGTTGACCACCAGGAATAGCCACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCATTCCAAATGTGCTCAAGTTGACCACCAGGAATAGCCACCAT  450

seq1  TCTTGATCTATTGGGGAAATACAAATCATCATATATACCCCATTGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCTATTGGGGAAATACAAATCATCATATATACCCCATTGTTCTC  500

seq1  AACTGGAAATTTAAAGTTGGAGATAAACACAGTTCCTACAGTGTAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAATTTAAAGTTGGAGATAAACACAGTTCCTACAGTGTAACAGT  550

seq1  GTCCACAATATTGGAGTTGACATAGAAAGTGGGGTCAGTCAAGATGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAATATTGGAGTTGACATAGAAAGTGGGGTCAGTCAAGATGTTCT  600

seq1  GTCCTGCAAAGAGGTAGAGGAGATGATTTTAGGTTGCAGGAGACATCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCAAAGAGGTAGAGGAGATGATTTTAGGTTGCAGGAGACATCCTC  650

seq1  CAACCACATATTATTGTTGAATAACAAATCATCAACATGTCCCTTTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATATTATTGTTGAATAACAAATCATCAACATGTCCCTTTCTAA  700

seq1  TTATTATGTCATCTAATTTTCACATGCAGAAAGTGGAGAAGACAGGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTCATCTAATTTTCACATGCAGAAAGTGGAGAAGACAGGGCTT  750

seq1  TGGGACTTTCTTTCAGGCCATCAATACAAAATTATCACAGCTGACTTACA  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGGACTTTCTTTCA-GCCATCAATACAAAATTATCACAGCTGACTTACA  799

seq1  GCTACCAGGTACAGAAGGAAGCAGCAGCACCCAGTTGGCATCTCATGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAGGTACAGAAGGAAGCAGCAGCACCCAGTTGGCATCTCATGCCA  849

seq1  CTTATGTATATGATTTGAGGATTTTTTTTCATATTAATTTTCTGCTGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTATATGATTTGAGGATTTTTTTTCATATTAATTTTCTGCTGACA  899

seq1  TAT-AAGGTTGGTACTA-TTTTTATAAATAATAAAGGAAGAAAGTACAGC  948
      ||| ||||||||||||| ||||||||||||||||||| |  |||||||||
seq2  TATAAAGGTTGGTACTATTTTTTATAAATAATAAAGGGAAGAAGTACAGC  949

seq1  AGATTTGAATTAATGAGTGTAGTGTAGTTTTCTTATTTAACATGCTAGCT  998
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGA-TTGAATTAATGAGTGTAGTGTAGTTTTC-TATTTAACATGCTAGCT  997

seq1  CCAGTACCTTAAATACAGGAGATTTTCAATGAAATTATAATTTTCAAATA  1048
       ||||| |||||||||||||||  ||| |||||| ||| |||||| ||||
seq2  -CAGTA-CTTAAATACAGGAGA--TTCCATGAAA-TAT-ATTTTC-AATA  1040

seq1  TATTTATTCAGAGCAGATTGAGAGAAGTATCTCTCTGAAATATACAAACT  1098
      ||||||||| |||||||| |||||||||||||||||||||| ||| ||||
seq2  TATTTATTC-GAGCAGATGGAGAGAAGTATCTCTCTGAAAT-TACCAACT  1088

seq1  GTTGTATTTTCTTTAGGAC  1117
      |||||| ||||||||||||
seq2  GTTGTA-TTTCTTTAGGAC  1106