BAC Information

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BAC

Clone NameB6Ng01-324K23
Chromosome3 (Build37)8 (Build37)
Map Location 150,515,824 - 150,516,81477,247,729 - 77,248,189
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324K23.bB6Ng01-324K23.g
ACCGA112935GA112936
length1,054819
definitionB6Ng01-324K23.b B6Ng01-324K23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(150,515,824 - 150,516,814)(77,247,729 - 77,248,189)
sequence
gaattccatgaaataccagtttgtgccactttgatatctgacaaaaaaac
atttatgttgtgatgaatataatagcatcagcaagcattactgaccaggc
ttaagaaatgacacaggataagtgtgagatcacaagctttctaacaccct
gcatatacattaggcaggaagacatctgattttcagtctccttctctaca
gaccaagaaggggggtgattacagtgatgacctcacatagcatctgatag
ctaagtgagataaggcctgtgtttgctttctacattttctgtttttattt
gtaggttatctaatgagcccctttttactgagaaattaatagtgattttt
ttgaggcattatctttatcattttcttcttctttttctttcttccaactc
tttatttaagtttaaaattatgttttagtttgcagatatgatactattag
tttgtaaaaattgttttgtttttttgttttcctttatataaagcattttt
taaattatctttttaaaaaaaatttttttttacagtccagattttatcct
cttccctgtccaccctctggctgttccacatcccatacatccaccaccct
ccacactccactaggatatccccatccccacccctaccctaccagacctc
cccactccctggggcctctagtctcttgagattaggtgtgtcttctctga
ctgaacccagacctggcagtcctctgctgaatgtgtgttgggggcctcat
aacagctggtgtatgctgcctggttggtagtcctgagatcttggcggtcc
aggttaggtaagactactgggcctcctatagcatctccctcctccttagc
ctctttccagttttatcacagtggtcagcagtccccttttggtgagcact
ccatagtctcactaatagtgttcaggcacttggggcttccccttgagctg
gatcccactttaggcctgttgctagacgtctgtttctcatgctcttcccc
atttttgttcctgcagtctttcagacaggaacaatattgggtcagaagtg
tgac

gaattccagaaaggttcaacatttattttatttccaaaatgacaagagag
ttttcatcaaaatcatagaggaactgtgaaaagatatttcagtagttaga
attatcaagtaggggaggattgagaatatgaaagagtatgagtatggaga
acaaatgcaggcattcagatcactgtgaaattataacaaaactcacgttt
ctctgaagtatgtctctgtgagtcacataatgcttattcctccataattc
ctacagtgaagttctaaatctcagtggtatgttagctccaggtgggtcct
tggacataattagatcatctacgtggagacttcatgaatggaaggaatct
ttgtactttcttttttttttttccattttttattaggtatttagctcatt
tacatttccaatgctataccaaaagtcccccatatccacccacccccact
cccctgcccacccactccccctttttggccctggtgttcccctgtactgg
ggcatataaagtttgcaagtccaatgggccgctctttccagtgatggccc
actaggccatcttttgatatatatgcatctagagttcaagagctccgggg
tactggttagttcataatgtttgttccacctatagggttgcagatccctt
tagctccttggctactttctctagctcctccattgggagccctatgatcc
atccattagctgactgtgagcttccacttctgtgtttgctaggccccggt
atagtctcacaagagacagctacatctgggtcctttaataaaatcttgct
agtgtatgcaattgtgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150515824_150516814
seq2: B6Ng01-324K23.b_48_1040

seq1  GAATTCCATGAAATACCAGTTTGTGCCACTTTGATATCTGACAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAATACCAGTTTGTGCCACTTTGATATCTGACAAAAAAAC  50

seq1  ATTTATGTTGTGATGAATATAATAGCATCAGCAAGCATTACTGACCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTGTGATGAATATAATAGCATCAGCAAGCATTACTGACCAGGC  100

seq1  TTAAGAAATGACACAGGATAAGTGTGAGATCACAAGCTTTCTAACACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATGACACAGGATAAGTGTGAGATCACAAGCTTTCTAACACCCT  150

seq1  GCATATACATTAGGCAGGAAGACATCTGATTTTCAGTCTCCTTCTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACATTAGGCAGGAAGACATCTGATTTTCAGTCTCCTTCTCTACA  200

seq1  GACCAAGAAGGGGGGTGATTACAGTGATGACCTCACATAGCATCTGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGAAGGGGGGTGATTACAGTGATGACCTCACATAGCATCTGATAG  250

seq1  CTAAGTGAGATAAGGCCTGTGTTTGCTTTCTACATTTTCTGTTTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGAGATAAGGCCTGTGTTTGCTTTCTACATTTTCTGTTTTTATTT  300

seq1  GTAGGTTATCTAATGAGCCCCTTTTTACTGAGAAATTAATAGTGATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTATCTAATGAGCCCCTTTTTACTGAGAAATTAATAGTGATTTTT  350

seq1  TTGAGGCATTATCTTTATCATTTTCTTCTTCTTTTTCTTTCTTCCAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCATTATCTTTATCATTTTCTTCTTCTTTTTCTTTCTTCCAACTC  400

seq1  TTTATTTAAGTTTAAAATTATGTTTTAGTTTGCAGATATGATACTATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAGTTTAAAATTATGTTTTAGTTTGCAGATATGATACTATTAG  450

seq1  TTTGTAAAAATTGTTTTGTTTTTTTGTTTTCCTTTATATAAAGCATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAAATTGTTTTGTTTTTTTGTTTTCCTTTATATAAAGCATTTTT  500

seq1  TAAATTATCTTTTTAAAAAAAATTTTTTTTTACAGTCCAGATTTTATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCTTTTTAAAAAAAATTTTTTTTTACAGTCCAGATTTTATCCT  550

seq1  CTTCCCTGTCCACCCTCTGGCTGTTCCACATCCCATACATCCACCACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGTCCACCCTCTGGCTGTTCCACATCCCATACATCCACCACCCT  600

seq1  CCACACTCCACTAGGATATCCCCATCCCCACCCCTACCCTACCAGACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCCACTAGGATATCCCCATCCCCACCCCTACCCTACCAGACCTC  650

seq1  CCCACTCCCTGGGGCCTCTAGTCTCTTGAGATTAGGTGTGTCTTCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCTGGGGCCTCTAGTCTCTTGAGATTAGGTGTGTCTTCTCTGA  700

seq1  CTGAACCCAGACCTGGCAGTCCTCTGCTGAATGTGTGTTGGGGGCCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCAGACCTGGCAGTCCTCTGCTGAATGTGTGTTGGGGGCCTCAT  750

seq1  AACAGCTGGTGTATGCTGCCTGGTTGGTAGTCCTGAGATCTTGGCGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGGTGTATGCTGCCTGGTTGGTAGTCCTGAGATCTTGGCGGTCC  800

seq1  AGGTTAGGTAAGACTACTGGGCCTCCTATAGCATCTCCCTCCTCCTTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGGTAAGACTACTGGGCCTCCTATAGCATCTCCCTCCTCCTTAGC  850

seq1  CTC-TTCCAGTTTTATCACAGTGGTCAGCAGTCCCCTTTTGGTGAGCACT  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGTTTTATCACAGTGGTCAGCAGTCCCCTTTTGGTGAGCACT  900

seq1  CCATAGTCTCACTAATAGTG-TCAGGCACTT-GGGCCTCCCCTTGAGCTG  947
      |||||||||||||||||||| |||||||||| |||| |||||||||||||
seq2  CCATAGTCTCACTAATAGTGTTCAGGCACTTGGGGCTTCCCCTTGAGCTG  950

seq1  GATCCCACTTTAGGCCTGTTGCTAGACGTCTGTTTCCTCATGCT  991
      ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GATCCCACTTTAGGCCTGTTGCTAGACGTCTGTTT-CTCATGCT  993


seq1: chr8_77247729_77248189
seq2: B6Ng01-324K23.g_424_884 (reverse)

seq1  TGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACGCAGATGTA  50
      |||||| |||||||||||||||||||||||||| ||||||| ||||||||
seq2  TGACACAATTGCATACACTAGCAAGATTTTATT-AAAGGACCCAGATGTA  49

seq1  GCTGTCTCTTGTGAGACTATGCCGGGGCCCAGCAAACACAGAAGTGGATG  100
      |||||||||||||||||||| |||||||| |||||||||||||||||| |
seq2  GCTGTCTCTTGTGAGACTATACCGGGGCCTAGCAAACACAGAAGTGGAAG  99

seq1  CTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGCTAG  149

seq1  AGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTAAAGGTGGAAC-A  199
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  AGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAA  199

seq1  ACATTATGAGCTAACCAGTACCCCGGAGCTCTTG-ACTCTAGCTGCATAT  248
      ||||||||| |||||||||||||||||||||||| ||||||| |||||||
seq2  ACATTATGAACTAACCAGTACCCCGGAGCTCTTGAACTCTAGATGCATAT  249

seq1  ACATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGG  298
      | |||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  ATATCAAAAGATGGCCTAGTGGGCCATCACTGGAAAGAGCGGCCCATTGG  299

seq1  ACTTGCAAACTTTATATGCCCCAGTACAGGGGAATTCCAGGGCCAAAAAG  348
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  ACTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAG  349

seq1  GGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTT  399

seq1  GGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAA  448
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  GGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGG-A  448

seq1  AAAAAAAAAAAGA  461
      |||||||||||||
seq2  AAAAAAAAAAAGA  461


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