BAC Information

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BAC

Clone NameB6Ng01-324N20
Chromosome8 (Build37)
Map Location 96,116,442 - 96,117,038
singlet/doubletsinglet
Overlap genenone
Upstream geneIrx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneGnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324N20.bB6Ng01-324N20.g
ACCGA113072GA113073
length1,105597
definitionB6Ng01-324N20.b B6Ng01-324N20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgttgttctcctccccagggcaattttgcttttcaagcattttt
cctctagttacaaactcttacgcgtatacccaactctgcaatcctttctc
acagagagaattgagtgaactttctgggttttcagtcttccctccaatct
ttttaaaaatggtatatatgaaaactacaaagcaaaaccagaaaatgccc
cccgggaacacagtagaccacccagcattagtagctgccatccttatgta
atgttgctaacctctcataatctgctgtttcttctaccaattagaagcag
agctacccattatgtcccatgttaggtaccacctataggcatacattttt
ttgctgtttactttaataagcgttcaacctcttttgcccaccacccagca
gaagtagttgaagagaaaagttatcaggatatgggggcagtgtacctgtt
tagcaatagttctttgagggcagctcgatcttctatggcagcaattcagt
cccatagcaaacaccaaatatgactcagtcctcaggcaggcagacactag
gcatgaaccagaagctgtagctcagttctgaagacactgcagagctcccc
aatgaccctgaggcaagcttcctcagtaacctcaccagcagttctttggt
tagtttctctcagtggtggtattactgcgggaagcgggtgtgggcacatg
ggccaagatggcaccctggcccattgccaggccctgtgaacccccatgtt
tactgccttgcccgaacatgcgcagtgaaactgcatgcataagctgtctg
ccaggttagactattcctcgtgatccgggaccttgtcagcctatctgtga
ccaacctgagctcgtgcctggagcatgtgtgattctgattgggatgaggt
ggtgtggagcaagatgaggtcagctgcccactactaatatggaaaatagc
cctttgcctcaagtaaaagaagaagctgcctgcgtggaaccctgtcttgg
gtggttccatgttgggtcttggtcctctgcgggatagaagaactggcagc
tagtggtgggccctgtacgtggaaattaatcgcattgggtctgccaaagg
tataa
gaattccatcacagggcctcagtgagcaccggatctaactacagaacaaa
cccactgagatctgaatggcatgggttgaggtggccgaattgtagccaca
ttggaacttataggttcccggagtgtttgatgcccccttgcctttggcag
cccaatttctctttgtaggaagagcagatggggggagggggcgagtccct
ggaagcacacagagcagggctcaaacactgccttattgtagggccatagg
gaagctactgatctcagggccattaatatgaaccttatttcaaatgatgc
ttctgcacctagtaagaacacttattagacagcttgttagcactgaccaa
ctgtttgagaggacactgtctgaggaggaaggatgtgttttagctcatag
ttctagaaggttcagccgatggttgatggttgtgtggtcccaaggacttt
gttctgagcatggtgatggctagaatgtatgaggaggaagctgtacacct
cctgatagacaggaagcagagagaaagcaaggggctggtaccagtataac
ctttaaaggcatttcccagtgacctactacttggggagagggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96116442_96117038
seq2: B6Ng01-324N20.g_68_664 (reverse)

seq1  CCTCCCCCTCTCCCCAAGTAGTAGGTCACTGGGAAATGCCTTTAAAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTCTCCCCAAGTAGTAGGTCACTGGGAAATGCCTTTAAAGGTT  50

seq1  ATACTGGTACCAGCCCCTTGCTTTCTCTCTGCTTCCTGTCTATCAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGTACCAGCCCCTTGCTTTCTCTCTGCTTCCTGTCTATCAGGAGG  100

seq1  TGTACAGCTTCCTCCTCATACATTCTAGCCATCACCATGCTCAGAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGCTTCCTCCTCATACATTCTAGCCATCACCATGCTCAGAACAAA  150

seq1  GTCCTTGGGACCACACAACCATCAACCATCGGCTGAACCTTCTAGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGGGACCACACAACCATCAACCATCGGCTGAACCTTCTAGAACTA  200

seq1  TGAGCTAAAACACATCCTTCCTCCTCAGACAGTGTCCTCTCAAACAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAAAACACATCCTTCCTCCTCAGACAGTGTCCTCTCAAACAGTTG  250

seq1  GTCAGTGCTAACAAGCTGTCTAATAAGTGTTCTTACTAGGTGCAGAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTAACAAGCTGTCTAATAAGTGTTCTTACTAGGTGCAGAAGCA  300

seq1  TCATTTGAAATAAGGTTCATATTAATGGCCCTGAGATCAGTAGCTTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAAATAAGGTTCATATTAATGGCCCTGAGATCAGTAGCTTCCCT  350

seq1  ATGGCCCTACAATAAGGCAGTGTTTGAGCCCTGCTCTGTGTGCTTCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTACAATAAGGCAGTGTTTGAGCCCTGCTCTGTGTGCTTCCAGG  400

seq1  GACTCGCCCCCTCCCCCCATCTGCTCTTCCTACAAAGAGAAATTGGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGCCCCCTCCCCCCATCTGCTCTTCCTACAAAGAGAAATTGGGCTG  450

seq1  CCAAAGGCAAGGGGGCATCAAACACTCCGGGAACCTATAAGTTCCAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGCAAGGGGGCATCAAACACTCCGGGAACCTATAAGTTCCAATGT  500

seq1  GGCTACAATTCGGCCACCTCAACCCATGCCATTCAGATCTCAGTGGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAATTCGGCCACCTCAACCCATGCCATTCAGATCTCAGTGGGTTT  550

seq1  GTTCTGTAGTTAGATCCGGTGCTCACTGAGGCCCTGTGATGGAATTC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTAGTTAGATCCGGTGCTCACTGAGGCCCTGTGATGGAATTC  597