BAC Information

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BAC

Clone NameB6Ng01-326D05
Chromosome8 (Build37)2 (Build37)
Map Location 26,742,375 - 26,742,925140,443,333 - 140,444,272
singlet/doubletsingletsinglet
Overlap geneWhsc1l1
Upstream geneAdam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416
Downstream genePpapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326D05.bB6Ng01-326D05.g
ACCGA114068GA114069
length879939
definitionB6Ng01-326D05.b B6Ng01-326D05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,742,375 - 26,742,925)(140,443,333 - 140,444,272)
sequence
gaattcctaaactcgaattttgaagcaaaatgatcaagatttaagtgttg
ctgtcaactgcacaccttgggctacatgggaccctgtgtgacagtattaa
ctgttgacatggcctggaactgcctaggagccaggccccccaagtatacc
tctgaaggattgtttagcatctgagcatgtgtgggaaggattacattaag
ttaatgaaggagtgagattcactaaaagctggcagcagcatcctggacat
ggctcatgcactaaaaagaaagaaaagaagtagaagaaggaggaggaaaa
ggaggaggagaggggaagaggaggaagatttttttttcttggtttttcga
gacagggtttctctgtgtagccctggctgtcctggaactcactctgtaga
ccaggctggcctcgcactcagaaatctgcctgcctctgcctcccgagtgc
tgggattaggagtctgccacttgtaaaggacaccatgagtgagtttgtac
ttgaccccgcagccagggaactagctttatgttgcttctatccaggatct
taatcacatgttccttattctgcagcttggtatggatggacagaatgacc
tggccattgtgcctggggcttccccaaaggcatcccacgtacctgtctgg
agctgtctggctgacagcactgagatcagacataccggaacagccgccag
gagactgtccccaggacccctcagggcagctcattcaggcaacaaacgtg
ctcttcgtagacactgctgttttgtggccacttgcataccaggccccatc
aagaaaggacctgctcagtttaactggcagcagactcctcctgccgtccc
cgtccccaattcaaggcagggtcccactg
gaattcaattgtgatcgtctcagtgaggtgctaaaaaacaaacaaacaaa
caaacaaacaaacaaaaaacccttaacacaaagtaccatgtacaaagtag
cacccttggagatgtctaatgtgattttctcaagtaaactctattccata
aaaagatatttttatgtgttcattgaatgaagatgtgggaaatagggatt
taatttggtgggtggacatagtttttcaatatgcaaaaaaatggtgcaga
atttcttttgtggtaaaaggaagtaacttaggaaaaaacaagagataatt
gagtttagagggtttcaacagagttcattcttagattaagaaacaataaa
aaaaaatttcatttgattaaaaatgtcatcatctccagatacagaaaact
gccttgatttgtctgccatcatcaatgtttttcttatttccctttggata
ctgagctattaactgaagtccatctgggttgcttttctactatattatat
ttttcccacagtagtacatagaaattatcaaaacaaattcttgattatat
tacaccagataagcttgtttatgggttgattataaaaccttgtaaaatct
caaattcttaggagttaaataaaaatgcatattaagcgaggtctgatact
tggagcttcataataactaataagctccacctttcctttactgcactatg
ggcataaatgttgcctctgacgaaaacattttattaaaataattaatgta
cagttcttattcatcatttatggttttatggtgcattgagttcaacctcc
agtactgcccacaccatatatttcgtgtgtctcgaaattgtcacattcac
ttaacatttatcattgccttaaattcaacctaccagaggtacaagcccat
gtatggtcagatgtctgctagccctggaggcagcgaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26742375_26742925
seq2: B6Ng01-326D05.b_372_922 (reverse)

seq1  CAGTGGGACCCTGCCTTGAATTGGGGGACGGGGACGGCAGGAGGAGTCTG  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGTGGGACCCTGCCTTGAATT-GGGGACGGGGACGGCAGGAGGAGTCTG  49

seq1  CTGCCAGTTAAACTGAGCAGGTCCCTTTCTTGATGGGGCCTGGTATGC-A  99
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  CTGCCAGTTAAACTGAGCAGGT-CCTTTCTTGATGGGGCCTGGTATGCAA  98

seq1  GTGGCCAC-AAACAGCAGTGTCTTCGAAGAGCACGTTTGTTGCCTGAATG  148
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  GTGGCCACAAAACAGCAGTGTCTACGAAGAGCACGTTTGTTGCCTGAATG  148

seq1  GGCTGCCCTGAGGGGTCCTGGGGACAGTCTCCTGGCGGCTGTTCCGGTAT  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCTGAGGGGTCCTGGGGACAGTCTCCTGGCGGCTGTTCCGGTAT  198

seq1  GTCTGATCTCAGTGCTGTCAGCCAGACAGCTCCAGACAGGTACGTGGGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATCTCAGTGCTGTCAGCCAGACAGCTCCAGACAGGTACGTGGGAT  248

seq1  GCCTTTGGGGAAGCCCCAGGCACAATGGCCAGGTCATTCTGTCCATCCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGGGAAGCCCCAGGCACAATGGCCAGGTCATTCTGTCCATCCAT  298

seq1  ACCAAGCTGCAGAATAAGGAACATGTGATTAAGATCCTGGATAGAAGCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTGCAGAATAAGGAACATGTGATTAAGATCCTGGATAGAAGCAA  348

seq1  CATAAAGCTAGTTCCCTGGCTGCGGGGTCAAGTACAAACTCACTCATGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGCTAGTTCCCTGGCTGCGGGGTCAAGTACAAACTCACTCATGGT  398

seq1  GTCCTTTACAAGTGGCAGACTCCTAATCCCAGCACTCGGGAGGCAGAGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTACAAGTGGCAGACTCCTAATCCCAGCACTCGGGAGGCAGAGGC  448

seq1  AGGCAGATTTCTGAGTGCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTCTGAGTGCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  498

seq1  GACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAGAAAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAGAAAAAA  548

seq1  AAA  551
      |||
seq2  AAA  551

seq1: chr2_140443333_140444272
seq2: B6Ng01-326D05.g_62_1000

seq1  GAATTCAATTGTGATCGTCTCAGTGAGGTGCTAAAAAACAAACAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGTGATCGTCTCAGTGAGGTGCTAAAAAACAAACAAACAAA  50

seq1  CAAACAAACAAACAAAAAACCCTTAACACAAAGTACCATGTACAAAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAAAAACCCTTAACACAAAGTACCATGTACAAAGTAG  100

seq1  CACCCTTGGAGATGTCTAATGTGATTTTCTCAAGTAAACTCTATTCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGGAGATGTCTAATGTGATTTTCTCAAGTAAACTCTATTCCATA  150

seq1  AAAAGATATTTTTATGTGTTCATTGAATGAAGATGTGGGAAATAGGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATTTTTATGTGTTCATTGAATGAAGATGTGGGAAATAGGGATT  200

seq1  TAATTTGGTGGGTGGACATAGTTTTTCAATATGCAAAAAAATGGTGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGTGGGTGGACATAGTTTTTCAATATGCAAAAAAATGGTGCAGA  250

seq1  ATTTCTTTTGTGGTAAAAGGAAGTAACTTAGGAAAAAACAAGAGATAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTGTGGTAAAAGGAAGTAACTTAGGAAAAAACAAGAGATAATT  300

seq1  GAGTTTAGAGGGTTTCAACAGAGTTCATTCTTAGATTAAGAAACAATAGA  350
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGTTTAGAGGGTTTCAACAGAGTTCATTCTTAGATTAAGAAACAATAAA  350

seq1  AAAAAATTTCATTTGATTAAAAATGTCATCATCTCCAGATACAGAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTCATTTGATTAAAAATGTCATCATCTCCAGATACAGAAAACT  400

seq1  GCCTTGATTTGTCTGCCATCATCAATGTTTTTCTTATTTCCCTTTGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATTTGTCTGCCATCATCAATGTTTTTCTTATTTCCCTTTGGATA  450

seq1  CTGAGCTATTAACTGAAGTCCATCTGGGTTGCTTTTCTACTATATTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTATTAACTGAAGTCCATCTGGGTTGCTTTTCTACTATATTATAT  500

seq1  TTTTCCCACAGTAGTACATAGAAATTATCAAAACAAATTCTTGATTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCACAGTAGTACATAGAAATTATCAAAACAAATTCTTGATTATAT  550

seq1  TACACCAGATAAGCTTGTTTATGGGTTGATTATAAAACCTTGTAAAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGATAAGCTTGTTTATGGGTTGATTATAAAACCTTGTAAAATCT  600

seq1  CAAATTCTTAGGAGTTAAATAAAAATGCATATTAAGCGAGGTCTGATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTTAGGAGTTAAATAAAAATGCATATTAAGCGAGGTCTGATACT  650

seq1  TGGAGCTTCATAATAACTAATAAGCTCCACCTTTCCTTTACTGCACTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTCATAATAACTAATAAGCTCCACCTTTCCTTTACTGCACTATG  700

seq1  GGCATAAATGTTGCCTCTGAGGAAAACATTTTATTAAAATAATTAATGTA  750
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCATAAATGTTGCCTCTGACGAAAACATTTTATTAAAATAATTAATGTA  750

seq1  CAGTTCTTATTCAGCATTTATGGTTTTATGGTGCATTGAGTTCAACCTCC  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTATTCATCATTTATGGTTTTATGGTGCATTGAGTTCAACCTCC  800

seq1  AGTACTGCCCACACAAATATA-TTCCTGTGTCTCGTAATTGTCACATTCA  849
      ||||||||||||||  ||||| ||| ||||||||| ||||||||||||| 
seq2  AGTACTGCCCACAC-CATATATTTCGTGTGTCTCGAAATTGTCACATTC-  848

seq1  AGTTAACATTTATCATTGCCTCAGAATTTAACCTACCAGAAATACTAACC  899
      | ||||||||||||||||||| | |||| |||||||||||  ||| | ||
seq2  ACTTAACATTTATCATTGCCTTA-AATTCAACCTACCAGAGGTACAAGCC  897

seq1  CATGTTTGGTCAGATGTCTTCTAG-AGTGGAGGCAGCGAAAG  940
      ||||| ||||||||||||| ||||   |||||||||||||||
seq2  CATGTATGGTCAGATGTCTGCTAGCCCTGGAGGCAGCGAAAG  939