BAC Information

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BAC

Clone NameB6Ng01-326G06
Chromosome8 (Build37)
Map Location 39,068,056 - 39,173,982
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
Downstream geneTusc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326G06.bB6Ng01-326G06.g
ACCGA114211GA114212
length1,0801,150
definitionB6Ng01-326G06.b B6Ng01-326G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,068,056 - 39,069,138)(39,172,836 - 39,173,982)
sequence
gaattcattcttgaagttattttgggcaatgaagggatcaagtatgtctg
ttgtaaaatatttttaaacttttagtgcattatgcctaatttttaggcaa
ttcaatttgaagatctcaatgatttccttagttaaatataaattccattt
gagattgaaataatatgaaaaggaaatacttttacggattgaataagtaa
gaatttttgcctgtggcagtattttgtttatttatttacttacatattag
tttatttccatattatataatgtcagagttattgctgcaataaaaatgtt
actggttttggttgaaaattgcctgagaacacattagaatattgctaacc
tgtatttcaagtaatagtatgtgacatcacttgttgataatttatatcgt
ttatttggaggatgatattaggcatataatagaatttctttcttggcaaa
tcttcattaagcttggtaaaatcagaagtgctgattaaaatattaaaaat
taaatttaaatgtttggttacatttaattcattcatcaatactagaagag
gttgacagatattgggagaatggtatcatgacatctagcagtttaaaact
atggacaaaaatagaccacaagattaaaaagagcaggaaagtatgcatgg
gatggtttcaggcagagaaaaaaaaaggaaagaaaaatttatataatatt
attatctaaaaatcaaaacaattaataataaaataatatagagctgtcag
taaactgaacattctgataatacagtggagtagtggtgcctagacgaccc
actttttttctgcctgaatataaggcatggttcacaaaagtgattttata
cttggtgtggtaacctggtctagaggcttaccggaagatcacaggccttt
tgggaacctactgttggtgcttaaccaaatgattatgctgtcaacttcaa
tttaaacatttatatgcatggacttctgctgctcccaacttttgtcagta
gattggtcgtgcttctctacaattgtctcctctagttgtaagaggagtaa
gaaatatacttatccctggttatgagggat

gaattcattaattctaacatgtaattgtgaaagaattttaaaatacccta
gtgaacttaaacattgaaaatatatctgttctttctatgaaacgactagc
ttaagaacaagtaaatagtcattagaaatgtttctcatggagcaataatg
taaaatagttacaatgaatcttcaggtcatatgtattggttagtgttaat
caaatgagaaataaaaatacttaaactttaacatgaagttatattttttt
gcttcatctagtatagaaacaattgtaaaatttaatatctggaggttaat
aaggaatgcgatatttaagttttatttttatatttaagatatgctaatct
atgctgtagatgtctaatttgattgctctttaagataacttttgcagcca
accattaagtttttcataacttgtgacacaagttctttacttttgtgatt
aactaccttgttgctaggttttggcattcaggggtttccattccttttca
tatttgagatgtgtgttaaaatggttgctaaaatctatctttggtagcat
cctttctcaacccaactgagtgtgttaaaaattcagattcagaaggacat
gtgatttttcctattagcactcagtaaaacaaaacagaatatttatattc
tgttaaagagcaaaatagatttgtcttagtttattttctaattgacatgt
aaactaatggtaccagttatgacattttcacctgtatttgtgtcagcatg
gttcatgcaacagtatggtttgttcttatttgttcccttccctactggat
ttcaaatttttcctatttctcttcttcctcatccacctcttctctgataa
gtttctggcatattttcatatcatacacaatgttcttttgtggagtgggc
aggtctattgtttttacagaaatttgtaaaatatgttggagtttcttgaa
tgtatagtatttcgtgagtatttgtacttgcagtatttacatttatttgt
agatttcttattggatatttttctttatttccaattcaaatgtttatccc
cttttcaacagtcctgaaacctccgtatccattatccctccacccttgat
ttttaagcatgccttcagtggtttttttgcgagtgaaacttaagtctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39068056_39069138
seq2: B6Ng01-326G06.b_47_1126

seq1  GAATTCATTCTTGAAGTTATTTTGGGCAATGAAGGGATCAAGTATGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTGAAGTTATTTTGGGCAATGAAGGGATCAAGTATGTCTG  50

seq1  TTGTAAAATATTTTTAAACTTTTAGTGCATTATGCCTAATTTTTAGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAATATTTTTAAACTTTTAGTGCATTATGCCTAATTTTTAGGCAA  100

seq1  TTCAATTTGAAGATCTCAATGATTTCCTTAGTTAAATATAAATTCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTGAAGATCTCAATGATTTCCTTAGTTAAATATAAATTCCATTT  150

seq1  GAGATTGAAATAATATGAAAAGGAAATACTTTTACGGATTGAATAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGAAATAATATGAAAAGGAAATACTTTTACGGATTGAATAAGTAA  200

seq1  GAATTTTTGCCTGTGGCAGTATTTTGTTTATTTATTTACTTACATATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTGCCTGTGGCAGTATTTTGTTTATTTATTTACTTACATATTAG  250

seq1  TTTATTTCCATATTATATAATGTCAGAGTTATTGCTGCAATAAAAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCATATTATATAATGTCAGAGTTATTGCTGCAATAAAAATGTT  300

seq1  ACTGGTTTTGGTTGAAAATTGCCTGAGAACACATTAGAATATTGCTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTTGGTTGAAAATTGCCTGAGAACACATTAGAATATTGCTAACC  350

seq1  TGTATTTCAAGTAATAGTATGTGACATCACTTGTTGATAATTTATATCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCAAGTAATAGTATGTGACATCACTTGTTGATAATTTATATCGT  400

seq1  TTATTTGGAGGATGATATTAGGCATATAATAGAATTTCTTTCTTGGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGAGGATGATATTAGGCATATAATAGAATTTCTTTCTTGGCAAA  450

seq1  TCTTCATTAAGCTTGGTAAAATCAGAAGTGCTGATTAAAATATTAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTAAGCTTGGTAAAATCAGAAGTGCTGATTAAAATATTAAAAAT  500

seq1  TAAATTTAAATGTTTGGTTACATTTAATTCATTCATCAATACTAGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAATGTTTGGTTACATTTAATTCATTCATCAATACTAGAAGAG  550

seq1  GTTGACAGATATTGGGAGAATGGTATCATGACATCTAGCAGTTTAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGATATTGGGAGAATGGTATCATGACATCTAGCAGTTTAAAACT  600

seq1  ATGGACAAAAATAGACCACAAGATTAAAAAGAGCAGGAAAGTATGCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAAAATAGACCACAAGATTAAAAAGAGCAGGAAAGTATGCATGG  650

seq1  GATGGTTTCAGGCAGAGAAAAAAAAAGGAAAGAAAAATTTATATAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTCAGGCAGAGAAAAAAAAAGGAAAGAAAAATTTATATAATATT  700

seq1  ATTATCTAAAAATCAAAACAATTAATAATAAAATAATATAGAGCTGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTAAAAATCAAAACAATTAATAATAAAATAATATAGAGCTGTCAG  750

seq1  TAAACTGAACATTCTGATAATACAGTGGAGTAGTGGTGCCTAGACGACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGAACATTCTGATAATACAGTGGAGTAGTGGTGCCTAGACGACCC  800

seq1  ACTTTTTTTCTGCCTGAATATAAGGCATGGTTCACAAAAGTGATTTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTCTGCCTGAATATAAGGCATGGTTCACAAAAGTGATTTTATA  850

seq1  CTTGGTGTGGTAACCTGGTCTAGAGGCTTACCGGAAAGATCACAGGCCTT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTGGTGTGGTAACCTGGTCTAGAGGCTTACCGG-AAGATCACAGGCCTT  899

seq1  TTGGGAACCTACTGTTGGTGCTTAACCAAATGATTATGCTGTCAAACTTC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGGGAACCTACTGTTGGTGCTTAACCAAATGATTATGCTGTC-AACTTC  948

seq1  AATTTAAACATTTATATGCATGGACTTCTGCTGCTCCCAACTTTTGTCAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATTTAAACATTTATATGCATGGACTTCTGCTGCTCCCAACTTTTGTC-A  997

seq1  GTAGATTGGTCGTGCTTCTCTACAATTGTCT-CTCTAGTTGTAAAGAGGA  1049
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  GTAGATTGGTCGTGCTTCTCTACAATTGTCTCCTCTAGTTGT-AAGAGGA  1046

seq1  GTAAGAAATATACTTATCCCTGGTTATGAGGGAT  1083
      ||||||||||||||||||||||||||||||||||
seq2  GTAAGAAATATACTTATCCCTGGTTATGAGGGAT  1080


seq1: chr8_39172836_39173982
seq2: B6Ng01-326G06.g_64_1213 (reverse)

seq1  TTTAGACTAAAGTTTCAACTCGCAAAAA---CACTGAAGCCATTGCTTTA  47
      |||||||| ||||||| |||||||||||   |||||||| || |||||  
seq2  TTTAGACTTAAGTTTC-ACTCGCAAAAAAACCACTGAAGGCA-TGCTT--  46

seq1  AAAAATC-AGGGT-GAGGGATAATGGGATA-GGAGGTTTCAGGACTGT--  92
      ||||||| ||||| |||||||||| ||||| |||||||||||||||||  
seq2  AAAAATCAAGGGTGGAGGGATAAT-GGATACGGAGGTTTCAGGACTGTTG  95

seq1  GAAAGGGGAT-AACATTTGAAATGGAAATAAAG-AAAATATCCAATAAGA  140
       ||||||||| |||||||||| ||||||||||| ||||||||||||||| 
seq2  AAAAGGGGATAAACATTTGAATTGGAAATAAAGAAAAATATCCAATAAG-  144

seq1  AAATCTACAAATAAATGTAAATACTGCAAGTACAAATACTCACGAAATAC  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACAAATAAATGTAAATACTGCAAGTACAAATACTCACGAAATAC  194

seq1  TATACATTTCAAGAAACTCCAACATATTTTACAAATTTCTGTAAAAACAA  240
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATACA-TTCAAGAAACTCCAACATATTTTACAAATTTCTGTAAAAACAA  243

seq1  TAGACCTGCCCACTCCACAAAAGAACATTGTGTATGATATGAAAATATGC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTGCCCACTCCACAAAAGAACATTGTGTATGATATGAAAATATGC  293

seq1  CAGAAACTTATCAGAGAAGAGGTGGATGAGGAAGAAGAGAAATAGGAAAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTTATCAGAGAAGAGGTGGATGAGGAAGAAGAGAAATAGGAAAA  343

seq1  ATTTGAAATCCAGTAGGGAAGGGAACAAATAAGAACAAACCATACTGTTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATCCAGTAGGGAAGGGAACAAATAAGAACAAACCATACTGTTG  393

seq1  CATGAACCATGCTGACACAAATACAGGTGAAAATGTCATAACTGGTACCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCATGCTGACACAAATACAGGTGAAAATGTCATAACTGGTACCA  443

seq1  TTAGTTTACATGTCAATTAGAAAATAAACTAAGACAAATCTATTTTGCTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTACATGTCAATTAGAAAATAAACTAAGACAAATCTATTTTGCTC  493

seq1  TTTAACAGAATATAAATATTCTGTTTTGTTTTACTGAGTGCTAATAGGAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGAATATAAATATTCTGTTTTGTTTTACTGAGTGCTAATAGGAA  543

seq1  AAATCACATGTCCTTCTGAATCTGAATTTTTAACACACTCAGTTGGGTTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATGTCCTTCTGAATCTGAATTTTTAACACACTCAGTTGGGTTG  593

seq1  AGAAAGGATGCTACCAAAGATAGATTTTAGCAACCATTTTAACACACATC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATGCTACCAAAGATAGATTTTAGCAACCATTTTAACACACATC  643

seq1  TCAAATATGAAAAGGAATGGAAACCCCTGAATGCCAAAACCTAGCAACAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATGAAAAGGAATGGAAACCCCTGAATGCCAAAACCTAGCAACAA  693

seq1  GGTAGTTAATCACAAAAGTAAAGAACTTGTGTCACAAGTTATGAAAAACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTAATCACAAAAGTAAAGAACTTGTGTCACAAGTTATGAAAAACT  743

seq1  TAATGGTTGGCTGCAAAAGTTATCTTAAAGAGCAATCAAATTAGACATCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTGGCTGCAAAAGTTATCTTAAAGAGCAATCAAATTAGACATCT  793

seq1  ACAGCATAGATTAGCATATCTTAAATATAAAAATAAAACTTAAATATCGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATAGATTAGCATATCTTAAATATAAAAATAAAACTTAAATATCGC  843

seq1  ATTCCTTATTAACCTCCAGATATTAAATTTTACAATTGTTTCTATACTAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTATTAACCTCCAGATATTAAATTTTACAATTGTTTCTATACTAG  893

seq1  ATGAAGCAAAAAAATATAACTTCATGTTAAAGTTTAAGTATTTTTATTTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAAAAAAATATAACTTCATGTTAAAGTTTAAGTATTTTTATTTC  943

seq1  TCATTTGATTAACACTAACCAATACATATGACCTGAAGATTCATTGTAAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGATTAACACTAACCAATACATATGACCTGAAGATTCATTGTAAC  993

seq1  TATTTTACATTATTGCTCCATGAGAAACATTTCTAATGACTATTTACTTG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACATTATTGCTCCATGAGAAACATTTCTAATGACTATTTACTTG  1043

seq1  TTCTTAAGCTAGTCGTTTCATAGAAAGAACAGATATATTTTCAATGTTTA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGCTAGTCGTTTCATAGAAAGAACAGATATATTTTCAATGTTTA  1093

seq1  AGTTCACTAGGGTATTTTAAAATTCTTTCACAATTACATGTTAGAATTAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTAGGGTATTTTAAAATTCTTTCACAATTACATGTTAGAATTAA  1143

seq1  TGAATTC  1147
      |||||||
seq2  TGAATTC  1150


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